CircRNA Information

General Information
circRNA Basic Information
CircID chr1:150229072|150229192
Strand -
CircType exon
Host Gene ENSG00000143401.13;
Algorism CIRI2;
Sequence CCTCATCATCCTCCTCTTCAGAGTCCGGCGCTTCATTATCCTCCTGATCAAATCCATCTAAGTATGTGATTTGCTGCAGTAGTTCAAAAATACTTTCTCTATAATCTTCCAGGTTTGTGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:150229072|150229192 hsa-miR-107 0 0 1
chr1:150229072|150229192 hsa-miR-217-5p 0 0 1
chr1:150229072|150229192 hsa-miR-217-3p 0 0 1
chr1:150229072|150229192 hsa-miR-383-5p 0 0 1
chr1:150229072|150229192 hsa-miR-383-3p 0 0 1
chr1:150229072|150229192 hsa-miR-545-5p 0 0 1
chr1:150229072|150229192 hsa-miR-545-3p 0 0 1
chr1:150229072|150229192 hsa-miR-606 0 0 1
chr1:150229072|150229192 hsa-miR-619-5p 0 0 1
chr1:150229072|150229192 hsa-miR-619-3p 0 0 1
chr1:150229072|150229192 hsa-miR-1290 0 0 1
chr1:150229072|150229192 hsa-miR-548l 0 0 1
chr1:150229072|150229192 hsa-miR-1246 0 0 1
chr1:150229072|150229192 hsa-miR-1272 1 1 1
chr1:150229072|150229192 hsa-miR-1184 0 0 1
chr1:150229072|150229192 hsa-miR-490-3p 0 1 1
chr1:150229072|150229192 hsa-miR-509-3-5p 0 0 1
chr1:150229072|150229192 hsa-miR-509-5p 0 1 1
chr1:150229072|150229192 hsa-miR-876-5p 0 0 1
chr1:150229072|150229192 hsa-miR-103 0 0 1
chr1:150229072|150229192 hsa-miR-7 0 0 1
chr1:150229072|150229192 hsa-miR-1826 0 0 1
chr1:150229072|150229192 hsa-miR-1185 0 0 1
chr1:150229072|150229192 hsa-miR-765 1 0 0
chr1:150229072|150229192 hsa-miR-665 1 0 0
chr1:150229072|150229192 hsa-miR-760 1 0 0
chr1:150229072|150229192 hsa-miR-378b 1 0 0
chr1:150229072|150229192 hsa-miR-3195 1 1 0
chr1:150229072|150229192 hsa-miR-3197 1 1 0
chr1:150229072|150229192 hsa-miR-378c 1 0 0
chr1:150229072|150229192 hsa-miR-378e 1 0 0
chr1:150229072|150229192 hsa-miR-4442 1 0 0
chr1:150229072|150229192 hsa-miR-4525 1 0 0
chr1:150229072|150229192 hsa-miR-4739 1 0 0
chr1:150229072|150229192 hsa-miR-6165 1 0 0
chr1:150229072|150229192 hsa-miR-7706 1 1 0
chr1:150229072|150229192 hsa-miR-8060 1 0 0
chr1:150229072|150229192 hsa-miR-8082 1 0 0
chr1:150229072|150229192 hsa-miR-12119 1 0 0
chr1:150229072|150229192 hsa-miR-127-5p 1 0 0
chr1:150229072|150229192 hsa-miR-153-5p 0 1 0
chr1:150229072|150229192 hsa-miR-4433a-3p 1 0 0
chr1:150229072|150229192 hsa-miR-6765-5p 1 0 0
chr1:150229072|150229192 hsa-miR-6894-5p 1 1 0
chr1:150229072|150229192 hsa-miR-6510-5p 1 0 0
chr1:150229072|150229192 hsa-miR-8071 1 0 0
chr1:150229072|150229192 hsa-miR-766-5p 1 0 0
chr1:150229072|150229192 hsa-miR-3192-5p 1 1 0
chr1:150229072|150229192 hsa-miR-4709-3p 0 1 0
chr1:150229072|150229192 hsa-miR-4722-5p 1 0 0
chr1:150229072|150229192 hsa-miR-4755-3p 1 0 0
chr1:150229072|150229192 hsa-miR-6798-5p 1 0 0
chr1:150229072|150229192 hsa-miR-3691-5p 1 0 0
chr1:150229072|150229192 hsa-miR-6771-5p 1 0 0
chr1:150229072|150229192 hsa-miR-516b-5p 1 0 0
chr1:150229072|150229192 hsa-miR-514a-5p 1 1 0
chr1:150229072|150229192 hsa-miR-4699-5p 0 1 0
chr1:150229072|150229192 hsa-miR-10400-5p 1 0 0
chr1:150229072|150229192 hsa-miR-5001-5p 1 0 0
chr1:150229072|150229192 hsa-miR-6797-5p 1 0 0
chr1:150229072|150229192 hsa-miR-10396a-5p 1 0 0
chr1:150229072|150229192 hsa-miR-6858-5p 1 0 0
chr1:150229072|150229192 hsa-miR-365a-5p 1 0 0
chr1:150229072|150229192 hsa-miR-3940-5p 1 0 0
chr1:150229072|150229192 hsa-miR-3116 0 1 0
chr1:150229072|150229192 hsa-miR-3173-3p 1 0 0
chr1:150229072|150229192 hsa-miR-3679-5p 1 1 0
chr1:150229072|150229192 hsa-miR-6891-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:150229072|150229192
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MEDYRESIFELLQQITYLDGFDQEDNEAPDSEEEDDE
Nucleotide Sequence CTGGAAGATTATAGAGAAAGTATTTTTGAACTACTGCAGCAAATCACATACTTAGATGGATTTGATCAGGAGGATAATGAAGCGCCGGACTCTGAAGAGGAGGATGATGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab