CircRNA Information

General Information
circRNA Basic Information
CircID chr1:150265837|150266180
Strand -
CircType exon
Host Gene ENSG00000117362.11;
Algorism CIRI2;
Sequence CTCCTCCCTCCCCCCACCTCAAAAAAGAAAAAAAGGCAGTTTAGGGTATTTATCACACCAAAAATGGTTCCCCCTCAGGCCTGAGAAAAAGACCAAGATGTCCAGTCTTGAGGGAGTACTGAGAAACTCAGAGCTCATCTATCCTTGAGCCTCCATTAATTTCATCTCCAGGGCAATGGCTAAACTAGGTCCCTTTTCTTGGCAACCTGCACTGTCCAGAACTGGAGATGGAGAAATACAGGGCGAGGACATCAGGAGGGCACCCCAGGCCCAGGGGTCCCCCCTAGGTTCCCTCAGTCCTCGGGTGGGATGCGCAGGGCAGAATACACCATCACCCGACTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:150265837|150266180 hsa-miR-148a-5p 0 0 1
chr1:150265837|150266180 hsa-miR-148a-3p 0 0 1
chr1:150265837|150266180 hsa-miR-143-5p 0 0 1
chr1:150265837|150266180 hsa-miR-143-3p 0 0 1
chr1:150265837|150266180 hsa-miR-152-5p 0 0 1
chr1:150265837|150266180 hsa-miR-152-3p 0 0 1
chr1:150265837|150266180 hsa-miR-136-5p 0 0 1
chr1:150265837|150266180 hsa-miR-136-3p 0 0 1
chr1:150265837|150266180 hsa-miR-148b-5p 0 0 1
chr1:150265837|150266180 hsa-miR-148b-3p 0 0 1
chr1:150265837|150266180 hsa-miR-422a 0 0 1
chr1:150265837|150266180 hsa-miR-608 0 0 1
chr1:150265837|150266180 hsa-miR-611 0 0 1
chr1:150265837|150266180 hsa-miR-620 0 0 1
chr1:150265837|150266180 hsa-miR-625-5p 0 0 1
chr1:150265837|150266180 hsa-miR-625-3p 0 0 1
chr1:150265837|150266180 hsa-miR-630 0 0 1
chr1:150265837|150266180 hsa-miR-650 0 0 1
chr1:150265837|150266180 hsa-miR-661 0 1 1
chr1:150265837|150266180 hsa-miR-657 0 0 1
chr1:150265837|150266180 hsa-miR-766-5p 0 0 1
chr1:150265837|150266180 hsa-miR-766-3p 0 0 1
chr1:150265837|150266180 hsa-miR-765 0 0 1
chr1:150265837|150266180 hsa-miR-874-5p 0 0 1
chr1:150265837|150266180 hsa-miR-874-3p 0 0 1
chr1:150265837|150266180 hsa-miR-1299 0 0 1
chr1:150265837|150266180 hsa-miR-1304-5p 0 0 1
chr1:150265837|150266180 hsa-miR-1304-3p 0 0 1
chr1:150265837|150266180 hsa-miR-1249-5p 0 0 1
chr1:150265837|150266180 hsa-miR-1249-3p 0 0 1
chr1:150265837|150266180 hsa-miR-548g-5p 0 0 1
chr1:150265837|150266180 hsa-miR-548g-3p 0 0 1
chr1:150265837|150266180 hsa-miR-1266-5p 0 0 1
chr1:150265837|150266180 hsa-miR-1266-3p 0 0 1
chr1:150265837|150266180 hsa-miR-1270 0 0 1
chr1:150265837|150266180 hsa-miR-1321 0 0 1
chr1:150265837|150266180 hsa-miR-129-5p 0 0 1
chr1:150265837|150266180 hsa-miR-145-5p 0 0 1
chr1:150265837|150266180 hsa-miR-324-5p 0 1 1
chr1:150265837|150266180 hsa-miR-146b-3p 0 0 1
chr1:150265837|150266180 hsa-miR-423-5p 0 0 1
chr1:150265837|150266180 hsa-miR-1224-3p 0 0 1
chr1:150265837|150266180 hsa-miR-331-3p 0 1 1
chr1:150265837|150266180 hsa-miR-556-5p 0 0 1
chr1:150265837|150266180 hsa-miR-324-3p 0 0 1
chr1:150265837|150266180 hsa-miR-342-5p 0 1 1
chr1:150265837|150266180 hsa-miR-515-5p 0 0 1
chr1:150265837|150266180 hsa-miR-1260 0 0 1
chr1:150265837|150266180 hsa-miR-1280 0 0 1
chr1:150265837|150266180 hsa-miR-378 0 0 1
chr1:150265837|150266180 hsa-miR-516b 0 0 1
chr1:150265837|150266180 hsa-miR-637 1 0 0
chr1:150265837|150266180 hsa-miR-638 1 0 0
chr1:150265837|150266180 hsa-miR-762 1 0 0
chr1:150265837|150266180 hsa-miR-1539 0 1 0
chr1:150265837|150266180 hsa-miR-2861 0 1 0
chr1:150265837|150266180 hsa-miR-3131 0 1 0
chr1:150265837|150266180 hsa-miR-3138 1 1 0
chr1:150265837|150266180 hsa-miR-4317 0 1 0
chr1:150265837|150266180 hsa-miR-4277 0 1 0
chr1:150265837|150266180 hsa-miR-4292 0 1 0
chr1:150265837|150266180 hsa-miR-4290 0 1 0
chr1:150265837|150266180 hsa-miR-3921 0 1 0
chr1:150265837|150266180 hsa-miR-4469 0 1 0
chr1:150265837|150266180 hsa-miR-4475 0 1 0
chr1:150265837|150266180 hsa-miR-4518 0 1 0
chr1:150265837|150266180 hsa-miR-4656 1 0 0
chr1:150265837|150266180 hsa-miR-4739 0 1 0
chr1:150265837|150266180 hsa-miR-5572 1 0 0
chr1:150265837|150266180 hsa-miR-6088 0 1 0
chr1:150265837|150266180 hsa-miR-6133 0 1 0
chr1:150265837|150266180 hsa-miR-6134 0 1 0
chr1:150265837|150266180 hsa-miR-11399 1 1 0
chr1:150265837|150266180 hsa-miR-12119 0 1 0
chr1:150265837|150266180 hsa-miR-18a-3p 0 1 0
chr1:150265837|150266180 hsa-miR-6765-5p 1 0 0
chr1:150265837|150266180 hsa-miR-6825-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6726-3p 0 1 0
chr1:150265837|150266180 hsa-miR-6742-5p 1 0 0
chr1:150265837|150266180 hsa-miR-345-3p 1 0 0
chr1:150265837|150266180 hsa-miR-939-3p 0 1 0
chr1:150265837|150266180 hsa-miR-5088-5p 1 0 0
chr1:150265837|150266180 hsa-miR-7109-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6749-5p 1 1 0
chr1:150265837|150266180 hsa-miR-4667-3p 0 1 0
chr1:150265837|150266180 hsa-miR-149-3p 0 1 0
chr1:150265837|150266180 hsa-miR-4742-3p 0 1 0
chr1:150265837|150266180 hsa-miR-660-3p 0 1 0
chr1:150265837|150266180 hsa-miR-6738-3p 0 1 0
chr1:150265837|150266180 hsa-miR-3173-5p 0 1 0
chr1:150265837|150266180 hsa-miR-4802-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6812-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6870-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6756-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6803-5p 1 0 0
chr1:150265837|150266180 hsa-miR-6819-5p 0 1 0
chr1:150265837|150266180 hsa-miR-7111-5p 0 1 0
chr1:150265837|150266180 hsa-miR-4728-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6795-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6887-5p 0 1 0
chr1:150265837|150266180 hsa-miR-4723-5p 1 1 0
chr1:150265837|150266180 hsa-miR-939-5p 1 0 0
chr1:150265837|150266180 hsa-miR-4758-5p 1 0 0
chr1:150265837|150266180 hsa-miR-6799-3p 0 1 0
chr1:150265837|150266180 hsa-miR-4664-5p 0 1 0
chr1:150265837|150266180 hsa-miR-4700-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6750-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6791-5p 0 1 0
chr1:150265837|150266180 hsa-miR-550a-5p 1 0 0
chr1:150265837|150266180 hsa-miR-6822-5p 0 1 0
chr1:150265837|150266180 hsa-miR-6805-3p 0 1 0
chr1:150265837|150266180 hsa-miR-34c-5p 0 1 0
chr1:150265837|150266180 hsa-miR-5195-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:150265837|150266180
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MATCTVQNWRWRNTGRGHQEGTPGPGVPPRFPQSSGGMRRAEYTITRL
Nucleotide Sequence TTGGCAACCTGCACTGTCCAGAACTGGAGATGGAGAAATACAGGGCGAGGACATCAGGAGGGCACCCCAGGCCCAGGGGTCCCCCCTAGGTTCCCTCAGTCCTCGGGTGGGATGCGCAGGGCAGAATACACCATCACCCGACTG
CircID chr1:150265837|150266180
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MAKLGPFSWQPALSRTGDGEIQGEDIRRAPQAQGSPLGSLSPRVGCAGQNTPSPDC
Nucleotide Sequence ATGGCTAAACTAGGTCCCTTTTCTTGGCAACCTGCACTGTCCAGAACTGGAGATGGAGAAATACAGGGCGAGGACATCAGGAGGGCACCCCAGGCCCAGGGGTCCCCCCTAGGTTCCCTCAGTCCTCGGGTGGGATGCGCAGGGCAGAATACACCATCACCCGACTGT
CircID chr1:150265837|150266180
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MHCPELEMEKYRARTSGGHPRPRGPP
Nucleotide Sequence CTGCACTGTCCAGAACTGGAGATGGAGAAATACAGGGCGAGGACATCAGGAGGGCACCCCAGGCCCAGGGGTCCCCCCTAG
CircID chr1:150265837|150266180
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MGLGCPPDVLALYFSISSSGQCRLPRKGT
Nucleotide Sequence CTGGGCCTGGGGTGCCCTCCTGATGTCCTCGCCCTGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAGGGACCTAG
CircID chr1:150265837|150266180
ORF Type ORF5
Protein Length 52
Nucleotide Length 159
Protein Sequence MREPRGDPWAWGALLMSSPCISPSPVLDSAGCQEKGPSLAIALEMKLMEAQG
Nucleotide Sequence CTGAGGGAACCTAGGGGGGACCCCTGGGCCTGGGGTGCCCTCCTGATGTCCTCGCCCTGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAGGGACCTAGTTTAGCCATTGCCCTGGAGATGAAATTAATGGAGGCTCAAGGATAG
CircID chr1:150265837|150266180
ORF Type ORF6
Protein Length 39
Nucleotide Length 120
Protein Sequence MSSEFLSTPSRLDILVFFSGLRGNHFWCDKYPKLPFFLF
Nucleotide Sequence ATGAGCTCTGAGTTTCTCAGTACTCCCTCAAGACTGGACATCTTGGTCTTTTTCTCAGGCCTGAGGGGGAACCATTTTTGGTGTGATAAATACCCTAAACTGCCTTTTTTTCTTTTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab