CircRNA Information

General Information
circRNA Basic Information
CircID chr1:150966231|150966540
Strand +
CircType exon
Host Gene ENSG00000143418.18;
Algorism CIRI2;
Sequence AGCTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCCCACAAGTTCATAACTGGAAAGGTGAAGCCCTGTTCCCATTGTGTAGGCCTTACTACTCTCTACAACTTCCTGAACTCCCATCTTGCCAGTAACTCTCTAAAAAACTAGTGTGGAGCCCTGGGTATAACAGGAACAAGCCCTCAGAGAGAAGCAGTACTTAGGGGTTTGAGGATCTCATGTAATAACCCTTCTTGTCCCTTTTCCACAGCTGGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGGGAGGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:150966231|150966540 hsa-let-7b-5p 0 0 1
chr1:150966231|150966540 hsa-let-7b-3p 0 0 1
chr1:150966231|150966540 hsa-let-7c-5p 0 0 1
chr1:150966231|150966540 hsa-let-7c-3p 0 0 1
chr1:150966231|150966540 hsa-let-7d-5p 0 0 1
chr1:150966231|150966540 hsa-let-7d-3p 0 0 1
chr1:150966231|150966540 hsa-let-7e-5p 0 0 1
chr1:150966231|150966540 hsa-let-7e-3p 0 0 1
chr1:150966231|150966540 hsa-miR-31-5p 0 0 1
chr1:150966231|150966540 hsa-miR-31-3p 0 0 1
chr1:150966231|150966540 hsa-miR-98-5p 0 0 1
chr1:150966231|150966540 hsa-miR-98-3p 0 0 1
chr1:150966231|150966540 hsa-miR-107 0 0 1
chr1:150966231|150966540 hsa-let-7g-5p 0 0 1
chr1:150966231|150966540 hsa-let-7g-3p 0 0 1
chr1:150966231|150966540 hsa-let-7i-5p 0 0 1
chr1:150966231|150966540 hsa-let-7i-3p 0 0 1
chr1:150966231|150966540 hsa-miR-382-5p 0 0 1
chr1:150966231|150966540 hsa-miR-382-3p 0 0 1
chr1:150966231|150966540 hsa-miR-412-5p 0 0 1
chr1:150966231|150966540 hsa-miR-412-3p 0 0 1
chr1:150966231|150966540 hsa-miR-202-5p 0 0 1
chr1:150966231|150966540 hsa-miR-202-3p 0 0 1
chr1:150966231|150966540 hsa-miR-193b-5p 0 0 1
chr1:150966231|150966540 hsa-miR-193b-3p 0 0 1
chr1:150966231|150966540 hsa-miR-634 0 0 1
chr1:150966231|150966540 hsa-miR-646 0 0 1
chr1:150966231|150966540 hsa-miR-892b 0 0 1
chr1:150966231|150966540 hsa-miR-873-5p 0 0 1
chr1:150966231|150966540 hsa-miR-873-3p 0 0 1
chr1:150966231|150966540 hsa-miR-942-5p 0 0 1
chr1:150966231|150966540 hsa-miR-942-3p 0 0 1
chr1:150966231|150966540 hsa-miR-1303 0 0 1
chr1:150966231|150966540 hsa-miR-1278 0 0 1
chr1:150966231|150966540 hsa-miR-1292-5p 0 0 1
chr1:150966231|150966540 hsa-miR-1292-3p 0 0 1
chr1:150966231|150966540 hsa-miR-145-5p 0 0 1
chr1:150966231|150966540 hsa-miR-193a-3p 0 0 1
chr1:150966231|150966540 hsa-miR-556-3p 0 0 1
chr1:150966231|150966540 hsa-miR-371-5p 0 0 1
chr1:150966231|150966540 hsa-miR-103 0 0 1
chr1:150966231|150966540 hsa-let-7a 0 0 1
chr1:150966231|150966540 hsa-let-7f 0 0 1
chr1:150966231|150966540 hsa-miR-768-3p 0 0 1
chr1:150966231|150966540 hsa-miR-637 1 0 0
chr1:150966231|150966540 hsa-miR-4322 1 1 0
chr1:150966231|150966540 hsa-miR-4270 1 0 0
chr1:150966231|150966540 hsa-miR-4458 1 1 0
chr1:150966231|150966540 hsa-miR-2392 1 0 0
chr1:150966231|150966540 hsa-miR-4682 1 0 0
chr1:150966231|150966540 hsa-miR-5193 0 1 0
chr1:150966231|150966540 hsa-miR-5194 0 1 0
chr1:150966231|150966540 hsa-miR-6081 1 0 0
chr1:150966231|150966540 hsa-miR-6124 0 1 0
chr1:150966231|150966540 hsa-miR-6127 1 0 0
chr1:150966231|150966540 hsa-miR-8089 1 0 0
chr1:150966231|150966540 hsa-miR-6749-3p 0 1 0
chr1:150966231|150966540 hsa-miR-6765-5p 1 0 0
chr1:150966231|150966540 hsa-miR-6894-5p 1 0 0
chr1:150966231|150966540 hsa-miR-27a-5p 1 0 0
chr1:150966231|150966540 hsa-miR-6833-5p 0 1 0
chr1:150966231|150966540 hsa-miR-7114-5p 0 1 0
chr1:150966231|150966540 hsa-miR-4653-3p 1 0 0
chr1:150966231|150966540 hsa-miR-6890-5p 0 1 0
chr1:150966231|150966540 hsa-miR-6875-3p 1 0 0
chr1:150966231|150966540 hsa-miR-6762-3p 1 0 0
chr1:150966231|150966540 hsa-miR-6873-3p 0 1 0
chr1:150966231|150966540 hsa-miR-7845-5p 1 1 0
chr1:150966231|150966540 hsa-miR-6817-3p 0 1 0
chr1:150966231|150966540 hsa-miR-6871-5p 1 1 0
chr1:150966231|150966540 hsa-miR-877-3p 0 1 0
chr1:150966231|150966540 hsa-miR-23a-5p 1 0 0
chr1:150966231|150966540 hsa-miR-6810-5p 1 1 0
chr1:150966231|150966540 hsa-miR-4732-5p 1 0 0
chr1:150966231|150966540 hsa-miR-4743-5p 1 0 0
chr1:150966231|150966540 hsa-miR-3162-5p 1 1 0
chr1:150966231|150966540 hsa-miR-605-5p 0 1 0
chr1:150966231|150966540 hsa-miR-1236-3p 0 1 0
chr1:150966231|150966540 hsa-miR-654-5p 1 1 0
chr1:150966231|150966540 hsa-miR-5000-5p 0 1 0
chr1:150966231|150966540 hsa-miR-3158-3p 0 1 0
chr1:150966231|150966540 hsa-miR-6832-5p 0 1 0
chr1:150966231|150966540 hsa-miR-6508-3p 0 1 0
chr1:150966231|150966540 hsa-miR-5195-5p 0 1 0
chr1:150966231|150966540 hsa-miR-6734-3p 0 1 0
chr1:150966231|150966540 hsa-miR-6778-5p 1 0 0
chr1:150966231|150966540 hsa-miR-892c-3p 1 1 0
chr1:150966231|150966540 hsa-miR-1915-3p 1 1 0
chr1:150966231|150966540 hsa-miR-4685-5p 1 0 0
chr1:150966231|150966540 hsa-miR-6758-5p 1 0 0
chr1:150966231|150966540 hsa-miR-6856-5p 1 0 0
chr1:150966231|150966540 hsa-miR-6773-5p 0 1 0
chr1:150966231|150966540 hsa-miR-4646-5p 1 0 0
chr1:150966231|150966540 hsa-miR-10400-3p 1 0 0
chr1:150966231|150966540 hsa-miR-520f-3p 1 0 0
chr1:150966231|150966540 hsa-miR-520d-3p 1 1 0
chr1:150966231|150966540 hsa-miR-6876-3p 1 0 0
chr1:150966231|150966540 hsa-miR-6771-3p 0 1 0
chr1:150966231|150966540 hsa-miR-520e-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:150966231|150966540
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MGLPHFAHGPQVHNWKGEALFPLCRPYYSLQLPELPSCQ
Nucleotide Sequence CTGGGCCTACCTCATTTTGCGCATGGCCCACAAGTTCATAACTGGAAAGGTGAAGCCCTGTTCCCATTGTGTAGGCCTTACTACTCTCTACAACTTCCTGAACTCCCATCTTGCCAGTAA
CircID chr1:150966231|150966540
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence LLHIFWAYLILRMAHKFITGKVKPCSHCVGLTTLYNFLNSHLASNSLKN
Nucleotide Sequence CTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCCCACAAGTTCATAACTGGAAAGGTGAAGCCCTGTTCCCATTGTGTAGGCCTTACTACTCTCTACAACTTCCTGAACTCCCATCTTGCCAGTAACTCTCTAAAAAACTAG
CircID chr1:150966231|150966540
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MGITGTSPQREAVLRGLRISCNNPSCPFSTAGRR
Nucleotide Sequence CTGGGTATAACAGGAACAAGCCCTCAGAGAGAAGCAGTACTTAGGGGTTTGAGGATCTCATGTAATAACCCTTCTTGTCCCTTTTCCACAGCTGGTAGAAGATGA
CircID chr1:150966231|150966540
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MSSLFLPGHCVHLLPAVEKGQEGLLHEILKPLSTASL
Nucleotide Sequence CTGAGCTCTCTGTTTCTTCCCGGTCACTGCGTTCATCTTCTACCAGCTGTGGAAAAGGGACAAGAAGGGTTATTACATGAGATCCTCAAACCCCTAAGTACTGCTTCTCTCTGA
CircID chr1:150966231|150966540
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MLLSEGLFLLYPGLHTSFLESYWQDGSSGSCRE
Nucleotide Sequence CTGCTTCTCTCTGAGGGCTTGTTCCTGTTATACCCAGGGCTCCACACTAGTTTTTTAGAGAGTTACTGGCAAGATGGGAGTTCAGGAAGTTGTAGAGAGTAG
CircID chr1:150966231|150966540
ORF Type ORF6
Protein Length 41
Nucleotide Length 123
Protein Sequence MGVQEVVESSKAYTMGTGLHLSSYELVGHAQNEVGPEDMQQ
Nucleotide Sequence ATGGGAGTTCAGGAAGTTGTAGAGAGTAGTAAGGCCTACACAATGGGAACAGGGCTTCACCTTTCCAGTTATGAACTTGTGGGCCATGCGCAAAATGAGGTAGGCCCAGAAGATATGCAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab