CircRNA Information

General Information
circRNA Basic Information
CircID chr1:150997067|150997269
Strand -
CircType exon
Host Gene ENSG00000143409.14;
Algorism CIRI2;
Sequence CCACCAATCCTAGTGTTGCCCTGGATGGGAGGCAGAGAAGGCAGCAGCACGTGAGGTCAAGGACATTACCAAGTCTGACCTTGGCATTTGTTGCCTGCTCTCATCCCCAACAGTCCATAAATAAGTTATCCAGCACATCTCAGGGGTGGAGGCGGGGGAGCAAGCCAACTAGCCATAGCCTCTGGAAGAAGGGGCAGGCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:150997067|150997269 hsa-miR-192-5p 0 0 1
chr1:150997067|150997269 hsa-miR-192-3p 0 0 1
chr1:150997067|150997269 hsa-miR-215-5p 0 0 1
chr1:150997067|150997269 hsa-miR-215-3p 0 0 1
chr1:150997067|150997269 hsa-miR-143-5p 0 0 1
chr1:150997067|150997269 hsa-miR-143-3p 0 0 1
chr1:150997067|150997269 hsa-miR-135b-5p 0 0 1
chr1:150997067|150997269 hsa-miR-135b-3p 0 0 1
chr1:150997067|150997269 hsa-miR-942-5p 0 0 1
chr1:150997067|150997269 hsa-miR-942-3p 0 0 1
chr1:150997067|150997269 hsa-miR-1287-5p 0 0 1
chr1:150997067|150997269 hsa-miR-1287-3p 0 0 1
chr1:150997067|150997269 hsa-miR-1248 0 0 1
chr1:150997067|150997269 hsa-miR-1255a 0 0 1
chr1:150997067|150997269 hsa-miR-1261 0 0 1
chr1:150997067|150997269 hsa-miR-1281 0 0 1
chr1:150997067|150997269 hsa-miR-1288-5p 0 0 1
chr1:150997067|150997269 hsa-miR-1288-3p 0 0 1
chr1:150997067|150997269 hsa-miR-525-5p 0 0 1
chr1:150997067|150997269 hsa-miR-509-3p 0 0 1
chr1:150997067|150997269 hsa-miR-576-3p 0 0 1
chr1:150997067|150997269 hsa-miR-324-3p 0 0 1
chr1:150997067|150997269 hsa-miR-520a-5p 0 0 1
chr1:150997067|150997269 hsa-miR-125a-5p 0 0 1
chr1:150997067|150997269 hsa-miR-105 0 0 1
chr1:150997067|150997269 hsa-miR-125b 0 0 1
chr1:150997067|150997269 hsa-miR-1255b 0 0 1
chr1:150997067|150997269 hsa-miR-1269 0 0 1
chr1:150997067|150997269 hsa-miR-135a 0 0 1
chr1:150997067|150997269 hsa-miR-544b 1 0 0
chr1:150997067|150997269 hsa-miR-4448 1 0 0
chr1:150997067|150997269 hsa-miR-3135b 1 0 0
chr1:150997067|150997269 hsa-miR-1587 1 0 0
chr1:150997067|150997269 hsa-miR-6069 1 0 0
chr1:150997067|150997269 hsa-miR-6088 1 0 0
chr1:150997067|150997269 hsa-miR-7974 1 0 0
chr1:150997067|150997269 hsa-miR-6728-5p 1 0 0
chr1:150997067|150997269 hsa-miR-6875-3p 1 0 0
chr1:150997067|150997269 hsa-miR-6842-3p 1 0 0
chr1:150997067|150997269 hsa-miR-5589-5p 1 0 0
chr1:150997067|150997269 hsa-miR-6735-3p 1 0 0
chr1:150997067|150997269 hsa-miR-6763-3p 1 0 0
chr1:150997067|150997269 hsa-miR-6894-3p 1 0 0
chr1:150997067|150997269 hsa-miR-6753-5p 1 0 0
chr1:150997067|150997269 hsa-miR-345-5p 1 0 0
chr1:150997067|150997269 hsa-miR-3180-5p 1 0 0
chr1:150997067|150997269 hsa-miR-6886-3p 1 0 0
chr1:150997067|150997269 hsa-miR-5088-3p 1 0 0
chr1:150997067|150997269 hsa-miR-6880-3p 1 0 0
chr1:150997067|150997269 hsa-miR-6761-5p 1 0 0
chr1:150997067|150997269 hsa-miR-10401-5p 1 0 0
chr1:150997067|150997269 hsa-miR-1915-3p 1 0 0
chr1:150997067|150997269 hsa-miR-3620-5p 1 0 0
chr1:150997067|150997269 hsa-miR-1909-3p 1 0 0
chr1:150997067|150997269 hsa-miR-4632-5p 1 0 0
chr1:150997067|150997269 hsa-miR-3940-5p 1 0 0
chr1:150997067|150997269 hsa-miR-6791-5p 1 0 0
chr1:150997067|150997269 hsa-miR-6810-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:150997067|150997269
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence MDGRQRRQQHVRSRTLPSLTLAFVACSHPQQSINKLSSTSQGWRRGSKPTSHSLWKKGQAS
Nucleotide Sequence CTGGATGGGAGGCAGAGAAGGCAGCAGCACGTGAGGTCAAGGACATTACCAAGTCTGACCTTGGCATTTGTTGCCTGCTCTCATCCCCAACAGTCCATAAATAAGTTATCCAGCACATCTCAGGGGTGGAGGCGGGGGAGCAAGCCAACTAGCCATAGCCTCTGGAAGAAGGGGCAGGCCAGC
CircID chr1:150997067|150997269
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MACSPASTPEMCWITYLWTVGDESRQQMPRSDLVMSLTSRAAAFSASHPGQH
Nucleotide Sequence TTGGCTTGCTCCCCCGCCTCCACCCCTGAGATGTGCTGGATAACTTATTTATGGACTGTTGGGGATGAGAGCAGGCAACAAATGCCAAGGTCAGACTTGGTAATGTCCTTGACCTCACGTGCTGCTGCCTTCTCTGCCTCCCATCCAGGGCAACACTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab