CircRNA Information

General Information
circRNA Basic Information
CircID chr1:151400523|151400845
Strand +
CircType exon
Host Gene ENSG00000159377.9;
Algorism CIRI2;
Sequence CTGAGCCAAGTATGCACCATAACCAGTGGCCAGCGAAGGGGCTTCATAGGCTACACCAAGCATGTCCACATAACCGAGGAAGCTAACAGGACACAATGGGTCAAAACTCATTTCACCTTAGATTCATCTTAGCTGAAGAAGGGGACCATGGGGTCTGAGTTAAAGTGGGATTCACTTGGGGAGAAGAGACAGAAGAGATACTACACAGGTACTAGGTTGGGTGGTAAAGGAAATAAGTTATTTGTATTCATATGAACCTCTCTCCATCAGCATAGCCTCCGATGACCATGGTGTTCCACAAAGGGTTCATCTTCGAGCGCCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:151400523|151400845 hsa-miR-18a-5p 0 0 1
chr1:151400523|151400845 hsa-miR-18a-3p 0 0 1
chr1:151400523|151400845 hsa-miR-185-5p 0 0 1
chr1:151400523|151400845 hsa-miR-185-3p 0 0 1
chr1:151400523|151400845 hsa-miR-18b-5p 0 0 1
chr1:151400523|151400845 hsa-miR-18b-3p 0 0 1
chr1:151400523|151400845 hsa-miR-584-5p 0 0 1
chr1:151400523|151400845 hsa-miR-584-3p 0 0 1
chr1:151400523|151400845 hsa-miR-588 0 0 1
chr1:151400523|151400845 hsa-miR-592 0 0 1
chr1:151400523|151400845 hsa-miR-593-5p 0 0 1
chr1:151400523|151400845 hsa-miR-593-3p 0 0 1
chr1:151400523|151400845 hsa-miR-599 0 0 1
chr1:151400523|151400845 hsa-miR-639 0 0 1
chr1:151400523|151400845 hsa-miR-660-5p 0 0 1
chr1:151400523|151400845 hsa-miR-660-3p 0 0 1
chr1:151400523|151400845 hsa-miR-890 0 0 1
chr1:151400523|151400845 hsa-miR-942-5p 0 0 1
chr1:151400523|151400845 hsa-miR-942-3p 0 0 1
chr1:151400523|151400845 hsa-miR-1236-5p 0 0 1
chr1:151400523|151400845 hsa-miR-1236-3p 0 0 1
chr1:151400523|151400845 hsa-miR-1238-5p 0 0 1
chr1:151400523|151400845 hsa-miR-1238-3p 0 0 1
chr1:151400523|151400845 hsa-miR-1248 0 0 1
chr1:151400523|151400845 hsa-miR-299-3p 0 0 1
chr1:151400523|151400845 hsa-miR-516a-3p 0 0 1
chr1:151400523|151400845 hsa-miR-24 0 0 1
chr1:151400523|151400845 hsa-miR-203 0 0 1
chr1:151400523|151400845 hsa-miR-147a 0 1 0
chr1:151400523|151400845 hsa-miR-133b 1 1 0
chr1:151400523|151400845 hsa-miR-3138 1 1 0
chr1:151400523|151400845 hsa-miR-4491 1 1 0
chr1:151400523|151400845 hsa-miR-4534 0 1 0
chr1:151400523|151400845 hsa-miR-4644 0 1 0
chr1:151400523|151400845 hsa-miR-4657 1 0 0
chr1:151400523|151400845 hsa-miR-5100 1 1 0
chr1:151400523|151400845 hsa-miR-8075 0 1 0
chr1:151400523|151400845 hsa-miR-12119 0 1 0
chr1:151400523|151400845 hsa-miR-12127 0 1 0
chr1:151400523|151400845 hsa-miR-187-3p 1 0 0
chr1:151400523|151400845 hsa-miR-4726-3p 1 0 0
chr1:151400523|151400845 hsa-miR-7847-3p 1 0 0
chr1:151400523|151400845 hsa-miR-6875-3p 1 0 0
chr1:151400523|151400845 hsa-miR-3189-5p 1 0 0
chr1:151400523|151400845 hsa-miR-6845-3p 1 0 0
chr1:151400523|151400845 hsa-miR-877-3p 1 0 0
chr1:151400523|151400845 hsa-miR-5008-5p 1 0 0
chr1:151400523|151400845 hsa-miR-4733-5p 1 0 0
chr1:151400523|151400845 hsa-miR-6735-3p 1 0 0
chr1:151400523|151400845 hsa-miR-6740-3p 1 0 0
chr1:151400523|151400845 hsa-miR-4713-5p 1 0 0
chr1:151400523|151400845 hsa-miR-615-5p 1 0 0
chr1:151400523|151400845 hsa-miR-1226-5p 1 0 0
chr1:151400523|151400845 hsa-miR-767-5p 1 1 0
chr1:151400523|151400845 hsa-miR-4743-3p 0 1 0
chr1:151400523|151400845 hsa-miR-6818-3p 0 1 0
chr1:151400523|151400845 hsa-miR-6809-3p 1 1 0
chr1:151400523|151400845 hsa-miR-7843-3p 0 1 0
chr1:151400523|151400845 hsa-miR-6769a-3p 0 1 0
chr1:151400523|151400845 hsa-miR-4646-3p 1 0 0
chr1:151400523|151400845 hsa-miR-3191-3p 1 0 0
chr1:151400523|151400845 hsa-miR-1250-5p 1 0 0
chr1:151400523|151400845 hsa-miR-616-3p 1 1 0
chr1:151400523|151400845 hsa-miR-629-3p 0 1 0
chr1:151400523|151400845 hsa-miR-6782-3p 1 0 0
chr1:151400523|151400845 hsa-miR-5088-3p 0 1 0
chr1:151400523|151400845 hsa-miR-203a-3p 0 1 0
chr1:151400523|151400845 hsa-miR-6773-3p 1 0 0
chr1:151400523|151400845 hsa-miR-1306-3p 1 0 0
chr1:151400523|151400845 hsa-miR-6888-3p 0 1 0
chr1:151400523|151400845 hsa-miR-6731-3p 1 0 0
chr1:151400523|151400845 hsa-miR-3156-3p 0 1 0
chr1:151400523|151400845 hsa-miR-133a-3p 1 1 0
chr1:151400523|151400845 hsa-miR-4740-3p 1 0 0
chr1:151400523|151400845 hsa-miR-3127-3p 1 1 0
chr1:151400523|151400845 hsa-miR-892c-3p 1 0 0
chr1:151400523|151400845 hsa-miR-6862-5p 0 1 0
chr1:151400523|151400845 hsa-miR-6846-5p 1 0 0
chr1:151400523|151400845 hsa-miR-6848-5p 1 0 0
chr1:151400523|151400845 hsa-miR-6756-3p 0 1 0
chr1:151400523|151400845 hsa-miR-6862-3p 1 0 0
chr1:151400523|151400845 hsa-miR-4768-5p 1 0 0
chr1:151400523|151400845 hsa-miR-6827-3p 1 0 0
chr1:151400523|151400845 hsa-miR-10395-5p 0 1 0
chr1:151400523|151400845 hsa-miR-664b-3p 1 0 0
chr1:151400523|151400845 hsa-miR-21-3p 0 1 0
chr1:151400523|151400845 hsa-miR-3606-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:151400523|151400845
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence LSQVCTITSGQRRGFIGYTKHVHITEEANRTQWVKTHFTLDSS
Nucleotide Sequence CTGAGCCAAGTATGCACCATAACCAGTGGCCAGCGAAGGGGCTTCATAGGCTACACCAAGCATGTCCACATAACCGAGGAAGCTAACAGGACACAATGGGTCAAAACTCATTTCACCTTAGATTCATCTTAG
CircID chr1:151400523|151400845
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MKKGTMGSELKWDSLGEKRQKRYYTGTRLGGKGNKLFVFI
Nucleotide Sequence CTGAAGAAGGGGACCATGGGGTCTGAGTTAAAGTGGGATTCACTTGGGGAGAAGAGACAGAAGAGATACTACACAGGTACTAGGTTGGGTGGTAAAGGAAATAAGTTATTTGTATTCATATGA
CircID chr1:151400523|151400845
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MGRRDRRDTTQVLGWVVKEISYLYSYEPLSISIASDDHGVPQRVHLRAP
Nucleotide Sequence TTGGGGAGAAGAGACAGAAGAGATACTACACAGGTACTAGGTTGGGTGGTAAAGGAAATAAGTTATTTGTATTCATATGAACCTCTCTCCATCAGCATAGCCTCCGATGACCATGGTGTTCCACAAAGGGTTCATCTTCGAGCGCCG
CircID chr1:151400523|151400845
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MCSISSVSSPQVNPTLTQTPWSPSSAKMNLR
Nucleotide Sequence CTGTGTAGTATCTCTTCTGTCTCTTCTCCCCAAGTGAATCCCACTTTAACTCAGACCCCATGGTCCCCTTCTTCAGCTAAGATGAATCTAAGGTGA
CircID chr1:151400523|151400845
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MSFDPLCPVSFLGYVDMLGVAYEAPSLATGYGAYLAQ
Nucleotide Sequence ATGAGTTTTGACCCATTGTGTCCTGTTAGCTTCCTCGGTTATGTGGACATGCTTGGTGTAGCCTATGAAGCCCCTTCGCTGGCCACTGGTTATGGTGCATACTTGGCTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab