CircRNA Information

General Information
circRNA Basic Information
CircID chr1:151403000|151403148
Strand -
CircType exon
Host Gene ENSG00000143442.20;
Algorism CIRI2;
Sequence CATAGTTCTTGAACTTTCTCAAAGGCAAAGGCTGACTTCAAAGTCCATTGTCTGTCAATAAAATGGCATCAGGCAAAAAGCTGGGGAAGAGAAGCCCAGATGGATCCTTGGTTGTTTTCAGATGTCAAAGGTTCACAAAGCTGGCCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:151403000|151403148 hsa-miR-489-5p 0 0 1
chr1:151403000|151403148 hsa-miR-489-3p 0 0 1
chr1:151403000|151403148 hsa-miR-539-5p 0 0 1
chr1:151403000|151403148 hsa-miR-539-3p 0 0 1
chr1:151403000|151403148 hsa-miR-570-5p 0 0 1
chr1:151403000|151403148 hsa-miR-570-3p 0 0 1
chr1:151403000|151403148 hsa-miR-573 0 0 1
chr1:151403000|151403148 hsa-miR-580-5p 0 0 1
chr1:151403000|151403148 hsa-miR-580-3p 0 0 1
chr1:151403000|151403148 hsa-miR-588 0 0 1
chr1:151403000|151403148 hsa-miR-612 0 0 1
chr1:151403000|151403148 hsa-miR-758-5p 0 0 1
chr1:151403000|151403148 hsa-miR-758-3p 0 0 1
chr1:151403000|151403148 hsa-miR-942-5p 0 0 1
chr1:151403000|151403148 hsa-miR-942-3p 0 0 1
chr1:151403000|151403148 hsa-miR-1236-5p 0 0 1
chr1:151403000|151403148 hsa-miR-1236-3p 0 0 1
chr1:151403000|151403148 hsa-miR-129-5p 0 0 1
chr1:151403000|151403148 hsa-miR-1300 0 0 1
chr1:151403000|151403148 hsa-miR-1285 0 0 1
chr1:151403000|151403148 hsa-miR-514 0 0 1
chr1:151403000|151403148 hsa-miR-1201 0 0 1
chr1:151403000|151403148 hsa-miR-378c 0 1 0
chr1:151403000|151403148 hsa-miR-378e 0 1 0
chr1:151403000|151403148 hsa-miR-8058 0 1 0
chr1:151403000|151403148 hsa-miR-127-3p 0 1 0
chr1:151403000|151403148 hsa-miR-6815-3p 0 1 0
chr1:151403000|151403148 hsa-miR-939-3p 0 1 0
chr1:151403000|151403148 hsa-miR-6809-3p 0 1 0
chr1:151403000|151403148 hsa-miR-7151-5p 0 1 0
chr1:151403000|151403148 hsa-miR-3140-3p 0 1 0
chr1:151403000|151403148 hsa-miR-320a-5p 0 1 0
chr1:151403000|151403148 hsa-miR-378a-3p 0 1 0
chr1:151403000|151403148 hsa-miR-5009-5p 0 1 0
chr1:151403000|151403148 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:151403000|151403148
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MSIKWHQAKSWGREAQMDPWLFSDVKGSQSWP
Nucleotide Sequence CTGTCAATAAAATGGCATCAGGCAAAAAGCTGGGGAAGAGAAGCCCAGATGGATCCTTGGTTGTTTTCAGATGTCAAAGGTTCACAAAGCTGGCCA

CircID chr1:151403000|151403148
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MSVNKMASGKKLGKRSPDGSLVVFRCQRFTKLAK
Nucleotide Sequence TTGTCTGTCAATAAAATGGCATCAGGCAAAAAGCTGGGGAAGAGAAGCCCAGATGGATCCTTGGTTGTTTTCAGATGTCAAAGGTTCACAAAGCTGGCCAAG

CircID chr1:151403000|151403148
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MKTTKDPSGLLFPSFLPDAILLTDNGL
Nucleotide Sequence CTGAAAACAACCAAGGATCCATCTGGGCTTCTCTTCCCCAGCTTTTTGCCTGATGCCATTTTATTGACAGACAATGGACTTTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites