CircRNA Information

General Information
circRNA Basic Information
CircID chr1:153534768|153535274
Strand -
CircType exon
Host Gene ENSG00000238279.1;
Algorism CIRI2;
Sequence CTCCTGGTCCTTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCATCCCCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:153534768|153535274 hsa-miR-640 0 0 1
chr1:153534768|153535274 hsa-miR-890 0 0 1
chr1:153534768|153535274 hsa-miR-708-5p 0 0 1
chr1:153534768|153535274 hsa-miR-708-3p 0 0 1
chr1:153534768|153535274 hsa-miR-665 0 0 1
chr1:153534768|153535274 hsa-miR-1205 0 0 1
chr1:153534768|153535274 hsa-miR-1286 0 0 1
chr1:153534768|153535274 hsa-miR-1252-5p 0 0 1
chr1:153534768|153535274 hsa-miR-1252-3p 0 0 1
chr1:153534768|153535274 hsa-miR-28-5p 0 0 1
chr1:153534768|153535274 hsa-miR-125a-5p 0 0 1
chr1:153534768|153535274 hsa-miR-125b 0 0 1
chr1:153534768|153535274 hsa-miR-7 0 0 1
chr1:153534768|153535274 hsa-miR-608 1 0 0
chr1:153534768|153535274 hsa-miR-658 1 0 0
chr1:153534768|153535274 hsa-miR-1183 1 0 0
chr1:153534768|153535274 hsa-miR-3131 1 0 0
chr1:153534768|153535274 hsa-miR-3139 0 1 0
chr1:153534768|153535274 hsa-miR-3154 1 0 0
chr1:153534768|153535274 hsa-miR-4319 0 1 0
chr1:153534768|153535274 hsa-miR-3929 1 1 0
chr1:153534768|153535274 hsa-miR-4450 1 0 0
chr1:153534768|153535274 hsa-miR-4507 1 0 0
chr1:153534768|153535274 hsa-miR-4525 1 0 0
chr1:153534768|153535274 hsa-miR-4533 0 1 0
chr1:153534768|153535274 hsa-miR-4534 1 0 0
chr1:153534768|153535274 hsa-miR-4538 1 0 0
chr1:153534768|153535274 hsa-miR-4656 1 0 0
chr1:153534768|153535274 hsa-miR-4674 1 0 0
chr1:153534768|153535274 hsa-miR-4739 1 0 0
chr1:153534768|153535274 hsa-miR-4784 1 0 0
chr1:153534768|153535274 hsa-miR-5194 1 0 0
chr1:153534768|153535274 hsa-miR-6079 1 0 0
chr1:153534768|153535274 hsa-miR-6085 1 0 0
chr1:153534768|153535274 hsa-miR-6125 1 0 0
chr1:153534768|153535274 hsa-miR-6127 1 0 0
chr1:153534768|153535274 hsa-miR-6132 1 0 0
chr1:153534768|153535274 hsa-miR-6165 1 0 0
chr1:153534768|153535274 hsa-miR-6745 1 0 0
chr1:153534768|153535274 hsa-miR-8075 1 1 0
chr1:153534768|153535274 hsa-miR-8087 0 1 0
chr1:153534768|153535274 hsa-miR-9718 1 0 0
chr1:153534768|153535274 hsa-miR-92a-1-5p 1 0 0
chr1:153534768|153535274 hsa-miR-7-5p 0 1 0
chr1:153534768|153535274 hsa-miR-6894-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4687-3p 1 0 0
chr1:153534768|153535274 hsa-miR-6804-5p 0 1 0
chr1:153534768|153535274 hsa-miR-5187-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6880-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6741-5p 1 0 0
chr1:153534768|153535274 hsa-miR-3180-3p 1 0 0
chr1:153534768|153535274 hsa-miR-6829-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6732-5p 1 0 0
chr1:153534768|153535274 hsa-miR-3150b-3p 1 0 0
chr1:153534768|153535274 hsa-miR-5088-5p 1 0 0
chr1:153534768|153535274 hsa-miR-3127-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4787-5p 1 0 0
chr1:153534768|153535274 hsa-miR-3160-3p 0 1 0
chr1:153534768|153535274 hsa-miR-3616-3p 1 0 0
chr1:153534768|153535274 hsa-miR-4684-3p 1 1 0
chr1:153534768|153535274 hsa-miR-6781-5p 1 0 0
chr1:153534768|153535274 hsa-miR-1307-5p 1 0 0
chr1:153534768|153535274 hsa-miR-5010-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4800-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4776-5p 1 0 0
chr1:153534768|153535274 hsa-miR-423-5p 1 0 0
chr1:153534768|153535274 hsa-miR-1250-5p 1 0 0
chr1:153534768|153535274 hsa-miR-3180 1 0 0
chr1:153534768|153535274 hsa-miR-6726-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6752-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6803-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6842-5p 1 0 0
chr1:153534768|153535274 hsa-miR-7110-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6722-3p 1 0 0
chr1:153534768|153535274 hsa-miR-6751-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6774-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6862-5p 1 0 0
chr1:153534768|153535274 hsa-miR-1909-3p 1 0 0
chr1:153534768|153535274 hsa-miR-4685-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4726-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6738-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6795-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6848-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6887-5p 1 0 0
chr1:153534768|153535274 hsa-miR-3187-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4723-5p 1 0 0
chr1:153534768|153535274 hsa-miR-939-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4769-5p 1 0 0
chr1:153534768|153535274 hsa-miR-4664-5p 1 0 0
chr1:153534768|153535274 hsa-miR-1914-3p 1 0 0
chr1:153534768|153535274 hsa-miR-3184-5p 1 0 0
chr1:153534768|153535274 hsa-miR-6884-5p 1 0 0
chr1:153534768|153535274 hsa-miR-10394-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:153534768|153535274
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MVLVPVQVFHQPCNFSIRANGELLLDQLLQLLLAQGVLVTL
Nucleotide Sequence CTGGTCCTTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCATCCGAGCCAATGGTGAGCTCCTTCTGGATCAGCTCCTTCAGCTCCTTCTTGCTCAGGGTGTGCTTGTCACCCTC

CircID chr1:153534768|153535274
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MFRSKSSISLAISASEPMVSSFWISSFSSFLLRVCLSPS
Nucleotide Sequence TTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCATCCGAGCCAATGGTGAGCTCCTTCTGGATCAGCTCCTTCAGCTCCTTCTTGCTCAGGGTGTGCTTGTCACCCTCC

CircID chr1:153534768|153535274
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MSKKELKELIQKELTIGSDAEIARLMEDLDRNKDQE
Nucleotide Sequence CTGAGCAAGAAGGAGCTGAAGGAGCTGATCCAGAAGGAGCTCACCATTGGCTCGGATGCTGAAATTGCAAGGCTGATGGAAGACTTGGACCGGAACAAGGACCAGGAG

CircID chr1:153534768|153535274
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MVLVPVQVFHQPCNFSILQLRANGELLLDQLLQLLLAQGVLVTL
Nucleotide Sequence CTGGTCCTTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCATCCTGCAGCTTCGAGCCAATGGTGAGCTCCTTCTGGATCAGCTCCTTCAGCTCCTTCTTGCTCAGGGTGTGCTTGTCACCCTC

CircID chr1:153534768|153535274
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MFRSKSSISLAISASCSFEPMVSSFWISSFSSFLLRVCLSPS
Nucleotide Sequence TTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCATCCTGCAGCTTCGAGCCAATGGTGAGCTCCTTCTGGATCAGCTCCTTCAGCTCCTTCTTGCTCAGGGTGTGCTTGTCACCCTCC

CircID chr1:153534768|153535274
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQE
Nucleotide Sequence CTGAGCAAGAAGGAGCTGAAGGAGCTGATCCAGAAGGAGCTCACCATTGGCTCGAAGCTGCAGGATGCTGAAATTGCAAGGCTGATGGAAGACTTGGACCGGAACAAGGACCAGGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites