CircRNA Information

General Information
circRNA Basic Information
CircID chr1:153561521|153563830
Strand +
CircType exon
Host Gene ENSG00000196754.9;
Algorism CIRI2;
Sequence CTTCCACAAGTACTCCTGCCAAGAGGGCGACAAGTTCAAGCTGAGTAAGGGGGAAATGAAGGAACTTCTGCACAAGGAGCTGCCCAGCTTTGTGGGGGAGAAAGTGGATGAGGAGGGGCTGAAGAAGCTGATGGGCAGCCTGGATGAGAACAGTGACCAGCAGGTGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:153561521|153563830 hsa-miR-205-5p 0 0 1
chr1:153561521|153563830 hsa-miR-205-3p 0 0 1
chr1:153561521|153563830 hsa-miR-320a-5p 0 0 1
chr1:153561521|153563830 hsa-miR-320a-3p 0 0 1
chr1:153561521|153563830 hsa-miR-370-5p 0 0 1
chr1:153561521|153563830 hsa-miR-370-3p 0 0 1
chr1:153561521|153563830 hsa-miR-510-5p 0 0 1
chr1:153561521|153563830 hsa-miR-510-3p 0 0 1
chr1:153561521|153563830 hsa-miR-579-5p 0 0 1
chr1:153561521|153563830 hsa-miR-579-3p 0 0 1
chr1:153561521|153563830 hsa-miR-612 0 0 1
chr1:153561521|153563830 hsa-miR-298 0 0 1
chr1:153561521|153563830 hsa-miR-1208 0 0 1
chr1:153561521|153563830 hsa-miR-1249-5p 0 0 1
chr1:153561521|153563830 hsa-miR-1249-3p 0 0 1
chr1:153561521|153563830 hsa-miR-512-5p 0 0 1
chr1:153561521|153563830 hsa-miR-361-3p 0 0 1
chr1:153561521|153563830 hsa-miR-1207-5p 0 0 1
chr1:153561521|153563830 hsa-miR-320b 0 0 1
chr1:153561521|153563830 hsa-miR-320c 0 0 1
chr1:153561521|153563830 hsa-miR-320d 0 0 1
chr1:153561521|153563830 hsa-miR-138 0 0 1
chr1:153561521|153563830 hsa-miR-1285 0 0 1
chr1:153561521|153563830 hsa-miR-1281 1 0 0
chr1:153561521|153563830 hsa-miR-1470 1 0 0
chr1:153561521|153563830 hsa-miR-718 1 0 0
chr1:153561521|153563830 hsa-miR-3181 1 0 0
chr1:153561521|153563830 hsa-miR-4268 1 0 0
chr1:153561521|153563830 hsa-miR-4290 1 0 0
chr1:153561521|153563830 hsa-miR-3943 1 0 0
chr1:153561521|153563830 hsa-miR-4469 1 0 0
chr1:153561521|153563830 hsa-miR-4686 1 0 0
chr1:153561521|153563830 hsa-miR-5193 1 0 0
chr1:153561521|153563830 hsa-miR-6072 1 0 0
chr1:153561521|153563830 hsa-miR-12116 1 0 0
chr1:153561521|153563830 hsa-miR-18a-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4665-3p 1 0 0
chr1:153561521|153563830 hsa-miR-766-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6892-3p 1 0 0
chr1:153561521|153563830 hsa-miR-210-5p 1 0 0
chr1:153561521|153563830 hsa-miR-1225-3p 1 0 0
chr1:153561521|153563830 hsa-miR-874-5p 1 0 0
chr1:153561521|153563830 hsa-miR-6842-3p 1 0 0
chr1:153561521|153563830 hsa-miR-3189-5p 1 0 0
chr1:153561521|153563830 hsa-miR-5589-5p 1 0 0
chr1:153561521|153563830 hsa-miR-6787-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6845-3p 1 0 0
chr1:153561521|153563830 hsa-miR-877-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4655-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6765-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6728-3p 1 0 0
chr1:153561521|153563830 hsa-miR-7109-3p 1 0 0
chr1:153561521|153563830 hsa-miR-3667-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4667-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6736-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6769a-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6870-3p 1 0 0
chr1:153561521|153563830 hsa-miR-1237-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4687-5p 1 0 0
chr1:153561521|153563830 hsa-miR-2114-5p 1 0 0
chr1:153561521|153563830 hsa-miR-6804-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6720-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4758-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6887-3p 1 0 0
chr1:153561521|153563830 hsa-miR-1224-3p 1 0 0
chr1:153561521|153563830 hsa-miR-3074-5p 1 0 0
chr1:153561521|153563830 hsa-miR-6886-3p 1 0 0
chr1:153561521|153563830 hsa-miR-5088-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4749-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6795-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6880-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6883-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4433a-5p 1 0 0
chr1:153561521|153563830 hsa-miR-767-3p 1 0 0
chr1:153561521|153563830 hsa-miR-3173-5p 1 0 0
chr1:153561521|153563830 hsa-miR-6515-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6812-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6780b-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6800-3p 1 0 0
chr1:153561521|153563830 hsa-miR-3127-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4685-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6791-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6877-3p 1 0 0
chr1:153561521|153563830 hsa-miR-2682-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6893-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6756-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6792-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6862-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6810-3p 1 0 0
chr1:153561521|153563830 hsa-miR-10392-3p 1 0 0
chr1:153561521|153563830 hsa-miR-3622a-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6819-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6823-3p 1 0 0
chr1:153561521|153563830 hsa-miR-6891-3p 1 0 0
chr1:153561521|153563830 hsa-miR-33b-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4690-3p 1 0 0
chr1:153561521|153563830 hsa-miR-7156-5p 1 0 0
chr1:153561521|153563830 hsa-miR-129-1-3p 1 0 0
chr1:153561521|153563830 hsa-miR-129-2-3p 1 0 0
chr1:153561521|153563830 hsa-miR-4724-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:153561521|153563830
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQV
Nucleotide Sequence CTGAGTAAGGGGGAAATGAAGGAACTTCTGCACAAGGAGCTGCCCAGCTTTGTGGGGGAGAAAGTGGATGAGGAGGGGCTGAAGAAGCTGATGGGCAGCCTGGATGAGAACAGTGACCAGCAGGTG
CircID chr1:153561521|153563830
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MFSSRLPISFFSPSSSTFSPTKLGSSLCRSSFISPLLSLNLSPSWQEYLWK
Nucleotide Sequence CTGTTCTCATCCAGGCTGCCCATCAGCTTCTTCAGCCCCTCCTCATCCACTTTCTCCCCCACAAAGCTGGGCAGCTCCTTGTGCAGAAGTTCCTTCATTTCCCCCTTACTCAGCTTGAACTTGTCGCCCTCTTGGCAGGAGTACTTGTGGAAG
CircID chr1:153561521|153563830
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MLVTVLIQAAHQLLQPLLIHFLPHKAGQLLVQKFLHFPLTQLELVALLAGVLVE
Nucleotide Sequence CTGCTGGTCACTGTTCTCATCCAGGCTGCCCATCAGCTTCTTCAGCCCCTCCTCATCCACTTTCTCCCCCACAAAGCTGGGCAGCTCCTTGTGCAGAAGTTCCTTCATTTCCCCCTTACTCAGCTTGAACTTGTCGCCCTCTTGGCAGGAGTACTTGTGGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab