CircRNA Information

General Information
circRNA Basic Information
CircID chr1:153937488|153937848
Strand -
CircType exon
Host Gene ENSG00000198837.8;
Algorism CIRI2;
Sequence CTGTTTGGTACGGCGAGGAGCAGGACTGCTGGGGGCGCTACGGGAAGGGCCTGGCACAGGCAGGGCCCCAGGTTGCTCTTGAAGAGACTCAAACAACTCAGCCCGTAGCTCTGGGAATCCATCATAGCTGGAGGGGCAGAGAGAAGCAACATCGGGGCAGTCAGCACAGGGCGAAGCGAGTTGGACTGGACCAGTCTATGGGACCCTGGAACATGTGAAGGCTAAGAGACTCTCACCAGTACTGGGGAGTGGATTCACTGCCCTCTGGTAAGGCAGGCTCCTCGGGAGGTGTGATAAAGACAGTGAGCTCACTTCCTGACAGCTCCTCTAGCTCCACTAAGGGTGTCGGCTCAGGCTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:153937488|153937848 hsa-miR-23a-5p 0 0 1
chr1:153937488|153937848 hsa-miR-23a-3p 0 0 1
chr1:153937488|153937848 hsa-miR-34a-5p 0 0 1
chr1:153937488|153937848 hsa-miR-34a-3p 0 0 1
chr1:153937488|153937848 hsa-miR-23b-5p 0 0 1
chr1:153937488|153937848 hsa-miR-23b-3p 0 0 1
chr1:153937488|153937848 hsa-miR-370-5p 0 0 1
chr1:153937488|153937848 hsa-miR-370-3p 0 0 1
chr1:153937488|153937848 hsa-miR-335-5p 0 0 1
chr1:153937488|153937848 hsa-miR-335-3p 0 0 1
chr1:153937488|153937848 hsa-miR-449a 0 0 1
chr1:153937488|153937848 hsa-miR-511-5p 0 0 1
chr1:153937488|153937848 hsa-miR-511-3p 0 0 1
chr1:153937488|153937848 hsa-miR-571 0 0 1
chr1:153937488|153937848 hsa-miR-596 1 0 1
chr1:153937488|153937848 hsa-miR-627-5p 0 0 1
chr1:153937488|153937848 hsa-miR-627-3p 0 0 1
chr1:153937488|153937848 hsa-miR-449b-5p 0 0 1
chr1:153937488|153937848 hsa-miR-449b-3p 0 0 1
chr1:153937488|153937848 hsa-miR-766-5p 0 0 1
chr1:153937488|153937848 hsa-miR-766-3p 0 0 1
chr1:153937488|153937848 hsa-miR-708-5p 0 0 1
chr1:153937488|153937848 hsa-miR-708-3p 0 0 1
chr1:153937488|153937848 hsa-miR-877-5p 0 0 1
chr1:153937488|153937848 hsa-miR-877-3p 0 0 1
chr1:153937488|153937848 hsa-miR-873-5p 0 0 1
chr1:153937488|153937848 hsa-miR-873-3p 0 0 1
chr1:153937488|153937848 hsa-miR-924 0 0 1
chr1:153937488|153937848 hsa-miR-942-5p 0 0 1
chr1:153937488|153937848 hsa-miR-942-3p 0 0 1
chr1:153937488|153937848 hsa-miR-1227-5p 0 0 1
chr1:153937488|153937848 hsa-miR-1227-3p 0 0 1
chr1:153937488|153937848 hsa-miR-1228-5p 0 0 1
chr1:153937488|153937848 hsa-miR-1228-3p 0 0 1
chr1:153937488|153937848 hsa-miR-1236-5p 0 0 1
chr1:153937488|153937848 hsa-miR-1236-3p 0 0 1
chr1:153937488|153937848 hsa-miR-1208 0 0 1
chr1:153937488|153937848 hsa-miR-1291 0 1 1
chr1:153937488|153937848 hsa-miR-1246 0 1 1
chr1:153937488|153937848 hsa-miR-1249-5p 0 0 1
chr1:153937488|153937848 hsa-miR-1249-3p 0 0 1
chr1:153937488|153937848 hsa-miR-1272 0 0 1
chr1:153937488|153937848 hsa-miR-1278 0 0 1
chr1:153937488|153937848 hsa-miR-1322 0 0 1
chr1:153937488|153937848 hsa-miR-770-5p 0 0 1
chr1:153937488|153937848 hsa-miR-146b-3p 0 1 1
chr1:153937488|153937848 hsa-miR-490-3p 0 1 1
chr1:153937488|153937848 hsa-miR-361-3p 0 1 1
chr1:153937488|153937848 hsa-miR-28-5p 0 0 1
chr1:153937488|153937848 hsa-miR-628-5p 0 0 1
chr1:153937488|153937848 hsa-miR-324-3p 0 0 1
chr1:153937488|153937848 hsa-miR-455-3p 0 0 1
chr1:153937488|153937848 hsa-miR-34c-5p 0 1 1
chr1:153937488|153937848 hsa-miR-151-5p 0 0 1
chr1:153937488|153937848 hsa-miR-220a 0 0 1
chr1:153937488|153937848 hsa-miR-219-1-3p 0 0 1
chr1:153937488|153937848 hsa-miR-151-3p 0 0 1
chr1:153937488|153937848 hsa-miR-346 1 0 0
chr1:153937488|153937848 hsa-miR-636 1 0 0
chr1:153937488|153937848 hsa-miR-637 1 0 0
chr1:153937488|153937848 hsa-miR-661 0 1 0
chr1:153937488|153937848 hsa-miR-762 1 0 0
chr1:153937488|153937848 hsa-miR-1913 1 1 0
chr1:153937488|153937848 hsa-miR-4268 0 1 0
chr1:153937488|153937848 hsa-miR-4274 0 1 0
chr1:153937488|153937848 hsa-miR-4292 1 0 0
chr1:153937488|153937848 hsa-miR-3615 1 0 0
chr1:153937488|153937848 hsa-miR-3943 1 0 0
chr1:153937488|153937848 hsa-miR-4656 1 0 0
chr1:153937488|153937848 hsa-miR-4682 1 0 0
chr1:153937488|153937848 hsa-miR-4741 1 0 0
chr1:153937488|153937848 hsa-miR-6078 1 0 0
chr1:153937488|153937848 hsa-miR-12115 1 1 0
chr1:153937488|153937848 hsa-miR-12127 1 0 0
chr1:153937488|153937848 hsa-miR-18a-3p 0 1 0
chr1:153937488|153937848 hsa-miR-6747-3p 0 1 0
chr1:153937488|153937848 hsa-miR-671-5p 1 0 0
chr1:153937488|153937848 hsa-miR-486-5p 1 1 0
chr1:153937488|153937848 hsa-miR-6089 1 0 0
chr1:153937488|153937848 hsa-miR-4755-3p 0 1 0
chr1:153937488|153937848 hsa-miR-6842-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6873-3p 0 1 0
chr1:153937488|153937848 hsa-miR-4728-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6726-3p 0 1 0
chr1:153937488|153937848 hsa-miR-1288-3p 0 1 0
chr1:153937488|153937848 hsa-miR-2467-5p 1 0 0
chr1:153937488|153937848 hsa-miR-6874-5p 0 1 0
chr1:153937488|153937848 hsa-miR-7855-5p 0 1 0
chr1:153937488|153937848 hsa-miR-6735-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6852-5p 0 1 0
chr1:153937488|153937848 hsa-miR-6772-3p 0 1 0
chr1:153937488|153937848 hsa-miR-4763-5p 1 0 0
chr1:153937488|153937848 hsa-miR-1247-5p 1 0 0
chr1:153937488|153937848 hsa-miR-4783-3p 0 1 0
chr1:153937488|153937848 hsa-miR-5001-3p 1 1 0
chr1:153937488|153937848 hsa-miR-4783-5p 1 0 0
chr1:153937488|153937848 hsa-miR-6818-3p 0 1 0
chr1:153937488|153937848 hsa-miR-7111-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6877-5p 1 0 0
chr1:153937488|153937848 hsa-miR-593-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6811-3p 1 1 0
chr1:153937488|153937848 hsa-miR-6889-3p 0 1 0
chr1:153937488|153937848 hsa-miR-1910-5p 1 1 0
chr1:153937488|153937848 hsa-miR-3614-3p 0 1 0
chr1:153937488|153937848 hsa-miR-1914-5p 1 1 0
chr1:153937488|153937848 hsa-miR-4749-3p 0 1 0
chr1:153937488|153937848 hsa-miR-4746-5p 1 0 0
chr1:153937488|153937848 hsa-miR-3670 0 1 0
chr1:153937488|153937848 hsa-miR-6851-3p 0 1 0
chr1:153937488|153937848 hsa-miR-3173-5p 0 1 0
chr1:153937488|153937848 hsa-miR-371b-3p 0 1 0
chr1:153937488|153937848 hsa-miR-6838-3p 0 1 0
chr1:153937488|153937848 hsa-miR-5002-3p 0 1 0
chr1:153937488|153937848 hsa-miR-6851-5p 1 0 0
chr1:153937488|153937848 hsa-miR-3620-5p 1 0 0
chr1:153937488|153937848 hsa-miR-10392-5p 0 1 0
chr1:153937488|153937848 hsa-miR-4726-5p 1 0 0
chr1:153937488|153937848 hsa-miR-939-5p 1 0 0
chr1:153937488|153937848 hsa-miR-10396a-3p 1 0 0
chr1:153937488|153937848 hsa-miR-10396b-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6799-3p 1 1 0
chr1:153937488|153937848 hsa-miR-7843-5p 0 1 0
chr1:153937488|153937848 hsa-miR-3184-5p 0 1 0
chr1:153937488|153937848 hsa-miR-6849-5p 1 0 0
chr1:153937488|153937848 hsa-miR-10401-3p 0 1 0
chr1:153937488|153937848 hsa-miR-6805-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6775-3p 1 1 0
chr1:153937488|153937848 hsa-miR-3059-5p 1 0 0
chr1:153937488|153937848 hsa-miR-6529-3p 0 1 0
chr1:153937488|153937848 hsa-miR-6823-3p 1 0 0
chr1:153937488|153937848 hsa-miR-1295b-5p 0 1 0
chr1:153937488|153937848 hsa-miR-4691-5p 1 0 0
chr1:153937488|153937848 hsa-miR-4768-5p 0 1 0
chr1:153937488|153937848 hsa-miR-6848-3p 1 0 0
chr1:153937488|153937848 hsa-miR-6876-3p 0 1 0
chr1:153937488|153937848 hsa-miR-6764-5p 0 1 0
chr1:153937488|153937848 hsa-miR-6833-3p 0 1 0
chr1:153937488|153937848 hsa-miR-7157-3p 0 1 0
chr1:153937488|153937848 hsa-miR-4712-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:153937488|153937848
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence LFGTARSRTAGGATGRAWHRQGPRLLLKRLKQLSP
Nucleotide Sequence CTGTTTGGTACGGCGAGGAGCAGGACTGCTGGGGGCGCTACGGGAAGGGCCTGGCACAGGCAGGGCCCCAGGTTGCTCTTGAAGAGACTCAAACAACTCAGCCCGTAG

CircID chr1:153937488|153937848
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MVRRGAGLLGALREGPGTGRAPGCS
Nucleotide Sequence TTGGTACGGCGAGGAGCAGGACTGCTGGGGGCGCTACGGGAAGGGCCTGGCACAGGCAGGGCCCCAGGTTGCTCTTGA

CircID chr1:153937488|153937848
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MEGQREATSGQSAQGEASWTGPVYGTLEHVKAKRLSPVLGSGFTALW
Nucleotide Sequence CTGGAGGGGCAGAGAGAAGCAACATCGGGGCAGTCAGCACAGGGCGAAGCGAGTTGGACTGGACCAGTCTATGGGACCCTGGAACATGTGAAGGCTAAGAGACTCTCACCAGTACTGGGGAGTGGATTCACTGCCCTCTGGTAA

CircID chr1:153937488|153937848
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MAQAGPQVALEETQTTQPVALGIHHSWRGREKQHRGSQHRAKRVGLDQSMGPWNM
Nucleotide Sequence CTGGCACAGGCAGGGCCCCAGGTTGCTCTTGAAGAGACTCAAACAACTCAGCCCGTAGCTCTGGGAATCCATCATAGCTGGAGGGGCAGAGAGAAGCAACATCGGGGCAGTCAGCACAGGGCGAAGCGAGTTGGACTGGACCAGTCTATGGGACCCTGGAACATGTGA

CircID chr1:153937488|153937848
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MPSGKAGSSGGVIKTVSSLPDSSSSSTKGVGSGF
Nucleotide Sequence CTGCCCTCTGGTAAGGCAGGCTCCTCGGGAGGTGTGATAAAGACAGTGAGCTCACTTCCTGACAGCTCCTCTAGCTCCACTAAGGGTGTCGGCTCAGGCTTC

CircID chr1:153937488|153937848
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MSGSELTVFITPPEEPALPEGSESTPQYW
Nucleotide Sequence CTGTCAGGAAGTGAGCTCACTGTCTTTATCACACCTCCCGAGGAGCCTGCCTTACCAGAGGGCAGTGAATCCACTCCCCAGTACTGGTGA

CircID chr1:153937488|153937848
ORF Type ORF7
Protein Length 35
Nucleotide Length 108
Protein Sequence MSLSHLPRSLPYQRAVNPLPSTGESLLAFTCSRVP
Nucleotide Sequence CTGTCTTTATCACACCTCCCGAGGAGCCTGCCTTACCAGAGGGCAGTGAATCCACTCCCCAGTACTGGTGAGAGTCTCTTAGCCTTCACATGTTCCAGGGTCCCATAG

CircID chr1:153937488|153937848
ORF Type ORF8
Protein Length 32
Nucleotide Length 96
Protein Sequence MFESLQEQPGALPVPGPSRSAPSSPAPRRTKQ
Nucleotide Sequence TTGTTTGAGTCTCTTCAAGAGCAACCTGGGGCCCTGCCTGTGCCAGGCCCTTCCCGTAGCGCCCCCAGCAGTCCTGCTCCTCGCCGTACCAAACAG

CircID chr1:153937488|153937848
ORF Type ORF9
Protein Length 64
Nucleotide Length 192
Protein Sequence MVQSNSLRPVLTAPMLLLSAPPAMMDSQSYGLSCLSLFKSNLGPCLCQALPVAPPAVLLLAVPN
Nucleotide Sequence CTGGTCCAGTCCAACTCGCTTCGCCCTGTGCTGACTGCCCCGATGTTGCTTCTCTCTGCCCCTCCAGCTATGATGGATTCCCAGAGCTACGGGCTGAGTTGTTTGAGTCTCTTCAAGAGCAACCTGGGGCCCTGCCTGTGCCAGGCCCTTCCCGTAGCGCCCCCAGCAGTCCTGCTCCTCGCCGTACCAAAC

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites