CircRNA Information

General Information
circRNA Basic Information
CircID chr1:153942513|153942671
Strand +
CircType exon
Host Gene ENSG00000198837.8;
Algorism CIRI2;
Sequence CTTTGTTAGCTATGTATCTGCTTGTCTCTTGCCATTTCTGGGGTAGTGGGGCCCAGCAGTGTACCTGTGCTATAAGGTGGGCCTGGCGAAGGCCAACACGCTGGTGTACGAGGCAGGTGAGTGGCCCCTTTATCCCTCCAATCCTGTGACCCTACATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:153942513|153942671 hsa-miR-31-5p 0 0 1
chr1:153942513|153942671 hsa-miR-31-3p 0 0 1
chr1:153942513|153942671 hsa-miR-376c-5p 0 0 1
chr1:153942513|153942671 hsa-miR-376c-3p 0 0 1
chr1:153942513|153942671 hsa-miR-495-5p 0 0 1
chr1:153942513|153942671 hsa-miR-495-3p 0 0 1
chr1:153942513|153942671 hsa-miR-1182 1 0 1
chr1:153942513|153942671 hsa-miR-1226-5p 0 0 1
chr1:153942513|153942671 hsa-miR-1226-3p 0 0 1
chr1:153942513|153942671 hsa-miR-296-5p 0 0 1
chr1:153942513|153942671 hsa-miR-1224-3p 0 0 1
chr1:153942513|153942671 hsa-miR-513a-5p 0 0 1
chr1:153942513|153942671 hsa-miR-220c 0 0 1
chr1:153942513|153942671 hsa-miR-768-5p 0 0 1
chr1:153942513|153942671 hsa-miR-4301 0 1 0
chr1:153942513|153942671 hsa-miR-4281 1 0 0
chr1:153942513|153942671 hsa-miR-3945 1 0 0
chr1:153942513|153942671 hsa-miR-4534 1 0 0
chr1:153942513|153942671 hsa-miR-4654 1 0 0
chr1:153942513|153942671 hsa-miR-5572 1 0 0
chr1:153942513|153942671 hsa-miR-9898 0 1 0
chr1:153942513|153942671 hsa-miR-9901 1 0 0
chr1:153942513|153942671 hsa-miR-12122 0 1 0
chr1:153942513|153942671 hsa-miR-7155-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6880-5p 1 0 0
chr1:153942513|153942671 hsa-miR-874-5p 1 1 0
chr1:153942513|153942671 hsa-miR-3189-5p 1 0 0
chr1:153942513|153942671 hsa-miR-1915-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6742-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6716-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6768-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6793-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6796-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6782-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6765-3p 1 0 0
chr1:153942513|153942671 hsa-miR-939-3p 1 0 0
chr1:153942513|153942671 hsa-miR-7109-5p 1 0 0
chr1:153942513|153942671 hsa-miR-5001-3p 1 0 0
chr1:153942513|153942671 hsa-miR-6823-5p 1 1 0
chr1:153942513|153942671 hsa-miR-149-3p 1 0 0
chr1:153942513|153942671 hsa-miR-6804-3p 1 1 0
chr1:153942513|153942671 hsa-miR-1228-3p 1 0 0
chr1:153942513|153942671 hsa-miR-6812-5p 1 0 0
chr1:153942513|153942671 hsa-miR-1249-5p 1 1 0
chr1:153942513|153942671 hsa-miR-6722-3p 1 0 0
chr1:153942513|153942671 hsa-miR-6797-5p 1 1 0
chr1:153942513|153942671 hsa-miR-6754-3p 1 0 0
chr1:153942513|153942671 hsa-miR-1909-3p 1 0 0
chr1:153942513|153942671 hsa-miR-6511a-5p 0 1 0
chr1:153942513|153942671 hsa-miR-1914-3p 1 0 0
chr1:153942513|153942671 hsa-miR-324-3p 1 1 0
chr1:153942513|153942671 hsa-miR-3184-5p 1 0 0
chr1:153942513|153942671 hsa-miR-6762-5p 1 1 0
chr1:153942513|153942671 hsa-miR-9902 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:153942513|153942671
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MCYKVGLAKANTLVYEAGEWPLYPSNPVTLH
Nucleotide Sequence CTGTGCTATAAGGTGGGCCTGGCGAAGGCCAACACGCTGGTGTACGAGGCAGGTGAGTGGCCCCTTTATCCCTCCAATCCTGTGACCCTACAT
CircID chr1:153942513|153942671
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence LLAMYLLVSCHFWGSGAQQCTCAIRWAWRRPTRWCTRQVSGPFIPPIL
Nucleotide Sequence TTGTTAGCTATGTATCTGCTTGTCTCTTGCCATTTCTGGGGTAGTGGGGCCCAGCAGTGTACCTGTGCTATAAGGTGGGCCTGGCGAAGGCCAACACGCTGGTGTACGAGGCAGGTGAGTGGCCCCTTTATCCCTCCAATCCTGTGA
CircID chr1:153942513|153942671
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MPRTPACWPSPGPPYSTGTLLGPTTPEMARDKQIHS
Nucleotide Sequence CTGCCTCGTACACCAGCGTGTTGGCCTTCGCCAGGCCCACCTTATAGCACAGGTACACTGCTGGGCCCCACTACCCCAGAAATGGCAAGAGACAAGCAGATACATAGCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab