CircRNA Information

General Information
circRNA Basic Information
CircID chr1:153952232|153952621
Strand -
CircType exon
Host Gene ENSG00000160741.15;
Algorism CIRI2;
Sequence ATTGGCAGGCTGGTCAGGAGATGGAAAGATGTTAATTCCAGGGACTTCACAGGACCGAGGTCGGGAAGAGGATGAGGATAGCTGAGGAGAGAAGGGAGAATATGGAAAATGAGGACAGTGCTCAGCAGAGAACCCTGGAAGGCCTGCCCCATGGCAAGGGGATAGCAGAGAGACTAGTGGGTGACACCCGGTGGCCTCCTCCTACCTTCTTAGCATCCCATGGCTTCAGCAAATGCTTGTCATCTAGCAAGTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:153952232|153952621 hsa-miR-146a-5p 0 0 1
chr1:153952232|153952621 hsa-miR-146a-3p 0 0 1
chr1:153952232|153952621 hsa-miR-587 0 0 1
chr1:153952232|153952621 hsa-miR-596 0 0 1
chr1:153952232|153952621 hsa-miR-597-5p 0 0 1
chr1:153952232|153952621 hsa-miR-597-3p 0 0 1
chr1:153952232|153952621 hsa-miR-765 0 0 1
chr1:153952232|153952621 hsa-miR-942-5p 0 0 1
chr1:153952232|153952621 hsa-miR-942-3p 0 0 1
chr1:153952232|153952621 hsa-miR-1236-5p 0 0 1
chr1:153952232|153952621 hsa-miR-1236-3p 0 0 1
chr1:153952232|153952621 hsa-miR-486-3p 0 1 1
chr1:153952232|153952621 hsa-miR-628-5p 0 0 1
chr1:153952232|153952621 hsa-miR-146b-5p 0 0 1
chr1:153952232|153952621 hsa-miR-623 1 0 0
chr1:153952232|153952621 hsa-miR-4308 0 1 0
chr1:153952232|153952621 hsa-miR-4533 1 0 0
chr1:153952232|153952621 hsa-miR-4739 1 0 0
chr1:153952232|153952621 hsa-miR-5193 1 0 0
chr1:153952232|153952621 hsa-miR-8059 0 1 0
chr1:153952232|153952621 hsa-miR-93-3p 0 1 0
chr1:153952232|153952621 hsa-miR-3194-3p 0 1 0
chr1:153952232|153952621 hsa-miR-6879-3p 1 1 0
chr1:153952232|153952621 hsa-miR-6881-3p 1 1 0
chr1:153952232|153952621 hsa-miR-6728-5p 0 1 0
chr1:153952232|153952621 hsa-miR-4695-5p 0 1 0
chr1:153952232|153952621 hsa-miR-6875-3p 0 1 0
chr1:153952232|153952621 hsa-miR-3187-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6873-3p 1 1 0
chr1:153952232|153952621 hsa-miR-7110-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6787-3p 1 1 0
chr1:153952232|153952621 hsa-miR-1915-5p 0 1 0
chr1:153952232|153952621 hsa-miR-6845-3p 1 1 0
chr1:153952232|153952621 hsa-miR-3180-3p 1 1 0
chr1:153952232|153952621 hsa-miR-877-3p 1 1 0
chr1:153952232|153952621 hsa-miR-185-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6728-3p 0 1 0
chr1:153952232|153952621 hsa-miR-6740-3p 1 0 0
chr1:153952232|153952621 hsa-miR-1908-3p 1 0 0
chr1:153952232|153952621 hsa-miR-7113-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6809-3p 1 1 0
chr1:153952232|153952621 hsa-miR-7111-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6830-3p 0 1 0
chr1:153952232|153952621 hsa-miR-5196-3p 0 1 0
chr1:153952232|153952621 hsa-miR-4446-5p 1 0 0
chr1:153952232|153952621 hsa-miR-378a-5p 1 1 0
chr1:153952232|153952621 hsa-miR-4646-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6870-3p 0 1 0
chr1:153952232|153952621 hsa-miR-211-5p 1 1 0
chr1:153952232|153952621 hsa-miR-1237-3p 1 0 0
chr1:153952232|153952621 hsa-miR-3158-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6867-3p 0 1 0
chr1:153952232|153952621 hsa-miR-6895-3p 0 1 0
chr1:153952232|153952621 hsa-miR-7151-5p 1 0 0
chr1:153952232|153952621 hsa-miR-6758-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6826-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6886-3p 1 1 0
chr1:153952232|153952621 hsa-miR-5088-3p 1 1 0
chr1:153952232|153952621 hsa-miR-6755-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6760-3p 1 1 0
chr1:153952232|153952621 hsa-miR-3124-3p 1 0 0
chr1:153952232|153952621 hsa-miR-204-5p 1 1 0
chr1:153952232|153952621 hsa-miR-6734-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6780b-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6812-5p 1 1 0
chr1:153952232|153952621 hsa-miR-6816-5p 1 0 0
chr1:153952232|153952621 hsa-miR-3127-3p 1 0 0
chr1:153952232|153952621 hsa-miR-320a-5p 1 1 0
chr1:153952232|153952621 hsa-miR-4685-3p 1 1 0
chr1:153952232|153952621 hsa-miR-6852-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6780b-5p 1 0 0
chr1:153952232|153952621 hsa-miR-328-5p 1 0 0
chr1:153952232|153952621 hsa-miR-939-5p 1 0 0
chr1:153952232|153952621 hsa-miR-4769-5p 1 1 0
chr1:153952232|153952621 hsa-miR-6862-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6751-3p 1 0 0
chr1:153952232|153952621 hsa-miR-6891-3p 1 1 0
chr1:153952232|153952621 hsa-miR-4756-5p 1 0 0
chr1:153952232|153952621 hsa-miR-5581-5p 0 1 0
chr1:153952232|153952621 hsa-miR-4768-5p 0 1 0
chr1:153952232|153952621 hsa-miR-5006-3p 0 1 0
chr1:153952232|153952621 hsa-miR-6833-3p 1 1 0
chr1:153952232|153952621 hsa-miR-7156-5p 1 0 0
chr1:153952232|153952621 hsa-miR-1250-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:153952232|153952621
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MRREGRIWKMRTVLSREPWKACPMARG
Nucleotide Sequence CTGAGGAGAGAAGGGAGAATATGGAAAATGAGGACAGTGCTCAGCAGAGAACCCTGGAAGGCCTGCCCCATGGCAAGGGGATAG
CircID chr1:153952232|153952621
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence LAGWSGDGKMLIPGTSQDRGREEDEDS
Nucleotide Sequence TTGGCAGGCTGGTCAGGAGATGGAAAGATGTTAATTCCAGGGACTTCACAGGACCGAGGTCGGGAAGAGGATGAGGATAGCTGA
CircID chr1:153952232|153952621
ORF Type ORF3
Protein Length 61
Nucleotide Length 183
Protein Sequence MRIAEERRENMENEDSAQQRTLEGLPHGKGIAERLVGDTRWPPPTFLASHGFSKCLSSSKF
Nucleotide Sequence ATGAGGATAGCTGAGGAGAGAAGGGAGAATATGGAAAATGAGGACAGTGCTCAGCAGAGAACCCTGGAAGGCCTGCCCCATGGCAAGGGGATAGCAGAGAGACTAGTGGGTGACACCCGGTGGCCTCCTCCTACCTTCTTAGCATCCCATGGCTTCAGCAAATGCTTGTCATCTAGCAAGTTC
CircID chr1:153952232|153952621
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MLDDKHLLKPWDAKKVGGGHRVSPTSLSAIPLPWGRPSRVLC
Nucleotide Sequence TTGCTAGATGACAAGCATTTGCTGAAGCCATGGGATGCTAAGAAGGTAGGAGGAGGCCACCGGGTGTCACCCACTAGTCTCTCTGCTATCCCCTTGCCATGGGGCAGGCCTTCCAGGGTTCTCTGCTGA
CircID chr1:153952232|153952621
ORF Type ORF5
Protein Length 56
Nucleotide Length 168
Protein Sequence MLSPCHGAGLPGFSAEHCPHFPYSPFSPQLSSSSSRPRSCEVPGINIFPSPDQPAN
Nucleotide Sequence CTGCTATCCCCTTGCCATGGGGCAGGCCTTCCAGGGTTCTCTGCTGAGCACTGTCCTCATTTTCCATATTCTCCCTTCTCTCCTCAGCTATCCTCATCCTCTTCCCGACCTCGGTCCTGTGAAGTCCCTGGAATTAACATCTTTCCATCTCCTGACCAGCCTGCCAAT
CircID chr1:153952232|153952621
ORF Type ORF6
Protein Length 50
Nucleotide Length 150
Protein Sequence MGQAFQGSLLSTVLIFHILPSLLSYPHPLPDLGPVKSLELTSFHLLTSLP
Nucleotide Sequence ATGGGGCAGGCCTTCCAGGGTTCTCTGCTGAGCACTGTCCTCATTTTCCATATTCTCCCTTCTCTCCTCAGCTATCCTCATCCTCTTCCCGACCTCGGTCCTGTGAAGTCCCTGGAATTAACATCTTTCCATCTCCTGACCAGCCTGCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab