CircRNA Information

General Information
circRNA Basic Information
CircID chr1:153968940|153969100
Strand +
CircType exon
Host Gene ENSG00000143578.14;
Algorism CIRI2;
Sequence AACCTCATAGAGCATAGGAGAACTGGTTGCCCTGGGGGCAGGGGGACTGTCTGGATGGCAGGGGTCCTCAGAGATGCCACTGTCACTGCCAGGAGATGCTTCTGAGCAGTACACCTCATTGGGATCAATGAAAAGCTTCAAGAAATCTTCAGGCTCACTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:153968940|153969100 hsa-miR-34a-5p 0 0 1
chr1:153968940|153969100 hsa-miR-34a-3p 0 0 1
chr1:153968940|153969100 hsa-miR-449a 0 1 1
chr1:153968940|153969100 hsa-miR-526b-5p 0 0 1
chr1:153968940|153969100 hsa-miR-526b-3p 0 0 1
chr1:153968940|153969100 hsa-miR-578 0 0 1
chr1:153968940|153969100 hsa-miR-640 0 0 1
chr1:153968940|153969100 hsa-miR-449b-5p 0 0 1
chr1:153968940|153969100 hsa-miR-449b-3p 0 0 1
chr1:153968940|153969100 hsa-miR-1324 0 1 1
chr1:153968940|153969100 hsa-miR-127-5p 0 0 1
chr1:153968940|153969100 hsa-miR-1224-5p 0 0 1
chr1:153968940|153969100 hsa-miR-361-3p 0 1 1
chr1:153968940|153969100 hsa-miR-767-3p 0 0 1
chr1:153968940|153969100 hsa-miR-324-3p 0 0 1
chr1:153968940|153969100 hsa-miR-34c-5p 0 0 1
chr1:153968940|153969100 hsa-miR-542-3p 0 0 1
chr1:153968940|153969100 hsa-miR-1913 0 1 0
chr1:153968940|153969100 hsa-miR-1976 0 1 0
chr1:153968940|153969100 hsa-miR-4313 1 0 0
chr1:153968940|153969100 hsa-miR-3921 0 1 0
chr1:153968940|153969100 hsa-miR-4641 1 0 0
chr1:153968940|153969100 hsa-miR-4751 1 1 0
chr1:153968940|153969100 hsa-miR-5693 0 1 0
chr1:153968940|153969100 hsa-miR-8073 0 1 0
chr1:153968940|153969100 hsa-miR-6747-3p 1 0 0
chr1:153968940|153969100 hsa-miR-210-5p 0 1 0
chr1:153968940|153969100 hsa-miR-1225-3p 1 0 0
chr1:153968940|153969100 hsa-miR-1915-5p 1 0 0
chr1:153968940|153969100 hsa-miR-4733-5p 0 1 0
chr1:153968940|153969100 hsa-miR-4793-5p 1 0 0
chr1:153968940|153969100 hsa-miR-6749-5p 1 0 0
chr1:153968940|153969100 hsa-miR-4640-3p 1 0 0
chr1:153968940|153969100 hsa-miR-339-5p 0 1 0
chr1:153968940|153969100 hsa-miR-4776-3p 1 0 0
chr1:153968940|153969100 hsa-miR-597-3p 1 0 0
chr1:153968940|153969100 hsa-miR-6752-3p 1 1 0
chr1:153968940|153969100 hsa-miR-216a-3p 0 1 0
chr1:153968940|153969100 hsa-miR-671-3p 1 0 0
chr1:153968940|153969100 hsa-miR-6868-5p 0 1 0
chr1:153968940|153969100 hsa-miR-6846-3p 0 1 0
chr1:153968940|153969100 hsa-miR-6812-5p 0 1 0
chr1:153968940|153969100 hsa-miR-1915-3p 0 1 0
chr1:153968940|153969100 hsa-miR-4726-5p 1 0 0
chr1:153968940|153969100 hsa-miR-4722-3p 1 1 0
chr1:153968940|153969100 hsa-miR-9851-5p 0 1 0
chr1:153968940|153969100 hsa-miR-6756-3p 1 0 0
chr1:153968940|153969100 hsa-miR-6801-3p 0 1 0
chr1:153968940|153969100 hsa-miR-6810-3p 1 1 0
chr1:153968940|153969100 hsa-miR-6837-5p 0 1 0
chr1:153968940|153969100 hsa-miR-6744-3p 1 0 0
chr1:153968940|153969100 hsa-miR-4769-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr1:153968940|153969100
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MVALGAGGLSGWQGSSEMPLSLPGDASEQYTSLGSMKSFKKSSGSL
Nucleotide Sequence CTGGTTGCCCTGGGGGCAGGGGGACTGTCTGGATGGCAGGGGTCCTCAGAGATGCCACTGTCACTGCCAGGAGATGCTTCTGAGCAGTACACCTCATTGGGATCAATGAAAAGCTTCAAGAAATCTTCAGGCTCACTC

CircID chr1:153968940|153969100
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MPWGQGDCLDGRGPQRCHCHCQEMLLSSTPHWDQ
Nucleotide Sequence TTGCCCTGGGGGCAGGGGGACTGTCTGGATGGCAGGGGTCCTCAGAGATGCCACTGTCACTGCCAGGAGATGCTTCTGAGCAGTACACCTCATTGGGATCAATGA

CircID chr1:153968940|153969100
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MIPMRCTAQKHLLAVTVASLRTPAIQTVPLPPGQPVLLCSMR
Nucleotide Sequence TTGATCCCAATGAGGTGTACTGCTCAGAAGCATCTCCTGGCAGTGACAGTGGCATCTCTGAGGACCCCTGCCATCCAGACAGTCCCCCTGCCCCCAGGGCAACCAGTTCTCCTATGCTCTATGAGG

CircID chr1:153968940|153969100
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MKLFIDPNEVYCSEASPGSDSGISEDPCHPDSPPAPRATSSPMLYEV
Nucleotide Sequence TTGAAGCTTTTCATTGATCCCAATGAGGTGTACTGCTCAGAAGCATCTCCTGGCAGTGACAGTGGCATCTCTGAGGACCCCTGCCATCCAGACAGTCCCCCTGCCCCCAGGGCAACCAGTTCTCCTATGCTCTATGAGGTT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites