CircRNA Information

General Information
circRNA Basic Information
CircID chr1:153972783|153972995
Strand +
CircType exon
Host Gene ENSG00000143578.14;
Algorism CIRI2;
Sequence CTTCTTGAGGACCCTCTCCTCTGCCTTGGAGGCCCAGGATGTGTGAGTCCTGGGTCCTTCACCTGCCCCCAACTCCCCAATGCTTCTCCTGGGATATTGGCCCCTCAGAGGTCATGGTGAGGCCCCTGGGTTGGGATACCCTTAGGGGAAGCATGTTACCTTGGTGAGGGGCAGGTGAGAGGGCAGGGAAACCCCTTCCTGCCCCAGCAGACG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:153972783|153972995 hsa-miR-377-5p 0 0 1
chr1:153972783|153972995 hsa-miR-377-3p 0 0 1
chr1:153972783|153972995 hsa-miR-571 0 0 1
chr1:153972783|153972995 hsa-miR-665 0 0 1
chr1:153972783|153972995 hsa-miR-939-5p 0 0 1
chr1:153972783|153972995 hsa-miR-939-3p 0 0 1
chr1:153972783|153972995 hsa-miR-1229-5p 0 0 1
chr1:153972783|153972995 hsa-miR-1229-3p 0 0 1
chr1:153972783|153972995 hsa-miR-1275 0 0 1
chr1:153972783|153972995 hsa-miR-1252-5p 0 0 1
chr1:153972783|153972995 hsa-miR-1252-3p 0 0 1
chr1:153972783|153972995 hsa-miR-125a-3p 0 1 1
chr1:153972783|153972995 hsa-miR-486-3p 0 1 1
chr1:153972783|153972995 hsa-miR-423-5p 0 0 1
chr1:153972783|153972995 hsa-miR-324-3p 0 0 1
chr1:153972783|153972995 hsa-miR-342-3p 0 0 1
chr1:153972783|153972995 hsa-miR-516a-3p 0 0 1
chr1:153972783|153972995 hsa-miR-1274a 0 0 1
chr1:153972783|153972995 hsa-miR-658 1 0 0
chr1:153972783|153972995 hsa-miR-711 0 1 0
chr1:153972783|153972995 hsa-miR-3147 1 0 0
chr1:153972783|153972995 hsa-miR-4259 0 1 0
chr1:153972783|153972995 hsa-miR-3665 0 1 0
chr1:153972783|153972995 hsa-miR-3921 0 1 0
chr1:153972783|153972995 hsa-miR-3945 1 0 0
chr1:153972783|153972995 hsa-miR-548ai 0 1 0
chr1:153972783|153972995 hsa-miR-4489 0 1 0
chr1:153972783|153972995 hsa-miR-4512 1 0 0
chr1:153972783|153972995 hsa-miR-4516 0 1 0
chr1:153972783|153972995 hsa-miR-4688 1 0 0
chr1:153972783|153972995 hsa-miR-5703 0 1 0
chr1:153972783|153972995 hsa-miR-7150 1 0 0
chr1:153972783|153972995 hsa-miR-12119 0 1 0
chr1:153972783|153972995 hsa-miR-12125 0 1 0
chr1:153972783|153972995 hsa-miR-18a-3p 0 1 0
chr1:153972783|153972995 hsa-miR-128-1-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6734-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6840-3p 0 1 0
chr1:153972783|153972995 hsa-miR-4433a-3p 1 0 0
chr1:153972783|153972995 hsa-miR-3150a-3p 1 0 0
chr1:153972783|153972995 hsa-miR-7106-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6857-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6892-3p 0 1 0
chr1:153972783|153972995 hsa-miR-6510-5p 1 0 0
chr1:153972783|153972995 hsa-miR-3692-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6721-5p 0 1 0
chr1:153972783|153972995 hsa-miR-2467-3p 1 1 0
chr1:153972783|153972995 hsa-miR-3150b-3p 0 1 0
chr1:153972783|153972995 hsa-miR-4793-5p 1 1 0
chr1:153972783|153972995 hsa-miR-7113-3p 0 1 0
chr1:153972783|153972995 hsa-miR-4446-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6824-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6789-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6804-3p 0 1 0
chr1:153972783|153972995 hsa-miR-6752-3p 0 1 0
chr1:153972783|153972995 hsa-miR-1207-5p 1 0 0
chr1:153972783|153972995 hsa-miR-4763-3p 1 0 0
chr1:153972783|153972995 hsa-miR-6816-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6775-5p 0 1 0
chr1:153972783|153972995 hsa-miR-1343-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6726-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6743-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6803-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6813-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6763-5p 1 1 0
chr1:153972783|153972995 hsa-miR-6808-5p 1 1 0
chr1:153972783|153972995 hsa-miR-6875-5p 1 1 0
chr1:153972783|153972995 hsa-miR-6879-5p 0 1 0
chr1:153972783|153972995 hsa-miR-4728-5p 1 0 0
chr1:153972783|153972995 hsa-miR-5189-5p 1 0 0
chr1:153972783|153972995 hsa-miR-1909-3p 1 0 0
chr1:153972783|153972995 hsa-miR-328-5p 1 1 0
chr1:153972783|153972995 hsa-miR-4685-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6735-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6777-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6889-5p 1 1 0
chr1:153972783|153972995 hsa-miR-6831-5p 1 0 0
chr1:153972783|153972995 hsa-miR-6511a-5p 0 1 0
chr1:153972783|153972995 hsa-miR-3184-5p 0 1 0
chr1:153972783|153972995 hsa-miR-6511a-3p 0 1 0
chr1:153972783|153972995 hsa-miR-6511b-3p 0 1 0
chr1:153972783|153972995 hsa-miR-6783-3p 0 1 0
chr1:153972783|153972995 hsa-miR-6764-5p 0 1 0
chr1:153972783|153972995 hsa-miR-570-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:153972783|153972995
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MGPSPAPNSPMLLLGYWPLRGHGEAPGLGYP
Nucleotide Sequence CTGGGTCCTTCACCTGCCCCCAACTCCCCAATGCTTCTCCTGGGATATTGGCCCCTCAGAGGTCATGGTGAGGCCCCTGGGTTGGGATACCCTTAG
CircID chr1:153972783|153972995
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MPWRPRMCESWVLHLPPTPQCFSWDIGPSEVMVRPLGWDTLRGSMLPW
Nucleotide Sequence CTGCCTTGGAGGCCCAGGATGTGTGAGTCCTGGGTCCTTCACCTGCCCCCAACTCCCCAATGCTTCTCCTGGGATATTGGCCCCTCAGAGGTCATGGTGAGGCCCCTGGGTTGGGATACCCTTAGGGGAAGCATGTTACCTTGGTGA
CircID chr1:153972783|153972995
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MRGQYPRRSIGELGAGEGPRTHTSWASKAEERVLKK
Nucleotide Sequence CTGAGGGGCCAATATCCCAGGAGAAGCATTGGGGAGTTGGGGGCAGGTGAAGGACCCAGGACTCACACATCCTGGGCCTCCAAGGCAGAGGAGAGGGTCCTCAAGAAG
CircID chr1:153972783|153972995
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MGSWGQVKDPGLTHPGPPRQRRGSSR
Nucleotide Sequence TTGGGGAGTTGGGGGCAGGTGAAGGACCCAGGACTCACACATCCTGGGCCTCCAAGGCAGAGGAGAGGGTCCTCAAGA
CircID chr1:153972783|153972995
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MLPLRVSQPRGLTMTSEGPISQEKHWGVGGR
Nucleotide Sequence ATGCTTCCCCTAAGGGTATCCCAACCCAGGGGCCTCACCATGACCTCTGAGGGGCCAATATCCCAGGAGAAGCATTGGGGAGTTGGGGGCAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab