CircRNA Information

General Information
circRNA Basic Information
CircID chr1:154260958|154261081
Strand -
CircType exon
Host Gene ENSG00000143569.17;
Algorism CIRI2;
Sequence CCCAACAGAACCAGACGCAGACTCACCATACCACGCAGCAGACATTCCTGAACCCGGCGCTGCCTCCTGGCTACAGTTACACCAGCCTGCCATACTATACAGGGGTCCCGGGCCTCCCCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:154260958|154261081 hsa-miR-183-5p 0 0 1
chr1:154260958|154261081 hsa-miR-183-3p 0 0 1
chr1:154260958|154261081 hsa-miR-206 1 0 1
chr1:154260958|154261081 hsa-miR-346 0 0 1
chr1:154260958|154261081 hsa-miR-575 0 0 1
chr1:154260958|154261081 hsa-miR-613 0 0 1
chr1:154260958|154261081 hsa-miR-627-5p 0 0 1
chr1:154260958|154261081 hsa-miR-627-3p 0 0 1
chr1:154260958|154261081 hsa-miR-632 1 1 1
chr1:154260958|154261081 hsa-miR-650 1 1 1
chr1:154260958|154261081 hsa-miR-665 0 1 1
chr1:154260958|154261081 hsa-miR-873-5p 0 0 1
chr1:154260958|154261081 hsa-miR-873-3p 0 0 1
chr1:154260958|154261081 hsa-miR-924 0 0 1
chr1:154260958|154261081 hsa-miR-939-5p 0 0 1
chr1:154260958|154261081 hsa-miR-939-3p 0 0 1
chr1:154260958|154261081 hsa-miR-1183 0 1 1
chr1:154260958|154261081 hsa-miR-1267 0 0 1
chr1:154260958|154261081 hsa-miR-1827 0 0 1
chr1:154260958|154261081 hsa-miR-885-3p 1 1 1
chr1:154260958|154261081 hsa-miR-654-3p 0 1 1
chr1:154260958|154261081 hsa-miR-1207-5p 1 0 1
chr1:154260958|154261081 hsa-miR-138 0 0 1
chr1:154260958|154261081 hsa-miR-1 0 0 1
chr1:154260958|154261081 hsa-miR-608 1 0 0
chr1:154260958|154261081 hsa-miR-637 1 0 0
chr1:154260958|154261081 hsa-miR-638 1 0 0
chr1:154260958|154261081 hsa-miR-639 1 0 0
chr1:154260958|154261081 hsa-miR-663a 1 0 0
chr1:154260958|154261081 hsa-miR-762 1 0 0
chr1:154260958|154261081 hsa-miR-1293 1 0 0
chr1:154260958|154261081 hsa-miR-1538 1 1 0
chr1:154260958|154261081 hsa-miR-3137 1 1 0
chr1:154260958|154261081 hsa-miR-3138 1 0 0
chr1:154260958|154261081 hsa-miR-3141 1 0 0
chr1:154260958|154261081 hsa-miR-3195 1 1 0
chr1:154260958|154261081 hsa-miR-3196 1 0 0
chr1:154260958|154261081 hsa-miR-3650 1 0 0
chr1:154260958|154261081 hsa-miR-4449 1 0 0
chr1:154260958|154261081 hsa-miR-4492 1 0 0
chr1:154260958|154261081 hsa-miR-4498 1 0 0
chr1:154260958|154261081 hsa-miR-4505 1 0 0
chr1:154260958|154261081 hsa-miR-4518 1 0 0
chr1:154260958|154261081 hsa-miR-3960 1 0 0
chr1:154260958|154261081 hsa-miR-4681 1 0 0
chr1:154260958|154261081 hsa-miR-4686 1 0 0
chr1:154260958|154261081 hsa-miR-4706 1 0 0
chr1:154260958|154261081 hsa-miR-4710 1 0 0
chr1:154260958|154261081 hsa-miR-5787 1 0 0
chr1:154260958|154261081 hsa-miR-8077 1 0 0
chr1:154260958|154261081 hsa-miR-8089 1 0 0
chr1:154260958|154261081 hsa-miR-11400 1 0 0
chr1:154260958|154261081 hsa-miR-12128 1 0 0
chr1:154260958|154261081 hsa-miR-138-5p 0 1 0
chr1:154260958|154261081 hsa-miR-511-5p 1 0 0
chr1:154260958|154261081 hsa-miR-4747-3p 1 1 0
chr1:154260958|154261081 hsa-miR-4433a-3p 1 0 0
chr1:154260958|154261081 hsa-miR-6765-5p 1 0 0
chr1:154260958|154261081 hsa-miR-671-5p 1 0 0
chr1:154260958|154261081 hsa-miR-3150a-3p 0 1 0
chr1:154260958|154261081 hsa-miR-6861-5p 1 0 0
chr1:154260958|154261081 hsa-miR-7106-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6825-5p 1 1 0
chr1:154260958|154261081 hsa-miR-4687-3p 1 0 0
chr1:154260958|154261081 hsa-miR-6799-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6728-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6089 1 0 0
chr1:154260958|154261081 hsa-miR-4695-5p 1 1 0
chr1:154260958|154261081 hsa-miR-4722-5p 1 1 0
chr1:154260958|154261081 hsa-miR-4474-3p 1 0 0
chr1:154260958|154261081 hsa-miR-6806-5p 0 1 0
chr1:154260958|154261081 hsa-miR-3187-3p 1 0 0
chr1:154260958|154261081 hsa-miR-7108-5p 1 1 0
chr1:154260958|154261081 hsa-miR-6796-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6805-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6821-5p 1 1 0
chr1:154260958|154261081 hsa-miR-5008-5p 1 1 0
chr1:154260958|154261081 hsa-miR-6853-5p 1 0 0
chr1:154260958|154261081 hsa-miR-3944-3p 1 0 0
chr1:154260958|154261081 hsa-miR-204-3p 1 0 0
chr1:154260958|154261081 hsa-miR-4640-5p 1 0 0
chr1:154260958|154261081 hsa-let-7b-5p 1 0 0
chr1:154260958|154261081 hsa-miR-425-3p 1 0 0
chr1:154260958|154261081 hsa-miR-4446-3p 1 0 0
chr1:154260958|154261081 hsa-miR-149-3p 1 0 0
chr1:154260958|154261081 hsa-miR-937-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6824-5p 1 0 0
chr1:154260958|154261081 hsa-miR-574-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6869-5p 1 0 0
chr1:154260958|154261081 hsa-miR-584-5p 1 0 0
chr1:154260958|154261081 hsa-miR-10400-5p 1 0 0
chr1:154260958|154261081 hsa-miR-1233-5p 1 0 0
chr1:154260958|154261081 hsa-miR-4763-3p 1 0 0
chr1:154260958|154261081 hsa-miR-6769b-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6778-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6893-5p 1 0 0
chr1:154260958|154261081 hsa-miR-1343-5p 1 0 0
chr1:154260958|154261081 hsa-miR-5001-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6737-5p 1 0 0
chr1:154260958|154261081 hsa-miR-7107-5p 1 0 0
chr1:154260958|154261081 hsa-miR-10401-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6763-5p 1 1 0
chr1:154260958|154261081 hsa-miR-6879-5p 1 0 0
chr1:154260958|154261081 hsa-miR-10396b-5p 1 0 0
chr1:154260958|154261081 hsa-miR-328-5p 1 0 0
chr1:154260958|154261081 hsa-miR-4632-5p 1 0 0
chr1:154260958|154261081 hsa-miR-4745-3p 0 1 0
chr1:154260958|154261081 hsa-miR-6846-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6848-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6883-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6790-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6724-5p 1 0 0
chr1:154260958|154261081 hsa-miR-6506-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:154260958|154261081
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MNPALPPGYSYTSLPYYTGVPGLPS
Nucleotide Sequence CTGAACCCGGCGCTGCCTCCTGGCTACAGTTACACCAGCCTGCCATACTATACAGGGGTCCCGGGCCTCCCCAGC
CircID chr1:154260958|154261081
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MYSMAGWCNCSQEAAPGSGMSAAWYGESASGSVG
Nucleotide Sequence CTGTATAGTATGGCAGGCTGGTGTAACTGTAGCCAGGAGGCAGCGCCGGGTTCAGGAATGTCTGCTGCGTGGTATGGTGAGTCTGCGTCTGGTTCTGTTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab