CircRNA Information

General Information
circRNA Basic Information
CircID chr1:154265257|154265418
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TTTGCCTGTCTATGCCCTTGGATCCTTCCCATCAGAGGTACACATTTCCTTCTCCTCTGCTATCAGGAACACTGATGGAAAAGAGTTTTAGAAGCAGTGTACTAGAGTGGCCAAATCACAAATAAGGAATCCTCCATTCACCCACAATTCAAACTCTAGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:154265257|154265418 hsa-miR-325 0 0 1
chr1:154265257|154265418 hsa-miR-587 0 0 1
chr1:154265257|154265418 hsa-miR-588 0 0 1
chr1:154265257|154265418 hsa-miR-758-5p 0 0 1
chr1:154265257|154265418 hsa-miR-758-3p 0 0 1
chr1:154265257|154265418 hsa-miR-765 0 1 1
chr1:154265257|154265418 hsa-miR-1200 0 0 1
chr1:154265257|154265418 hsa-miR-548e-5p 0 0 1
chr1:154265257|154265418 hsa-miR-548e-3p 0 0 1
chr1:154265257|154265418 hsa-miR-1257 1 1 1
chr1:154265257|154265418 hsa-miR-1262 0 1 1
chr1:154265257|154265418 hsa-miR-1252-5p 0 0 1
chr1:154265257|154265418 hsa-miR-1252-3p 0 0 1
chr1:154265257|154265418 hsa-miR-628-3p 0 0 1
chr1:154265257|154265418 hsa-miR-518d-5p 0 0 1
chr1:154265257|154265418 hsa-miR-519b-5p 0 0 1
chr1:154265257|154265418 hsa-miR-519c-5p 0 0 1
chr1:154265257|154265418 hsa-miR-520c-5p 0 0 1
chr1:154265257|154265418 hsa-miR-548a-3p 0 0 1
chr1:154265257|154265418 hsa-miR-548f 0 0 1
chr1:154265257|154265418 hsa-miR-219-2-3p 0 0 1
chr1:154265257|154265418 hsa-miR-526a 0 0 1
chr1:154265257|154265418 hsa-miR-3945 0 1 0
chr1:154265257|154265418 hsa-miR-4476 1 1 0
chr1:154265257|154265418 hsa-miR-4739 1 0 0
chr1:154265257|154265418 hsa-miR-8070 0 1 0
chr1:154265257|154265418 hsa-miR-12119 1 0 0
chr1:154265257|154265418 hsa-miR-6894-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6510-5p 0 1 0
chr1:154265257|154265418 hsa-miR-6741-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6759-5p 0 1 0
chr1:154265257|154265418 hsa-miR-6716-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6748-5p 1 1 0
chr1:154265257|154265418 hsa-miR-6796-5p 1 0 0
chr1:154265257|154265418 hsa-miR-2467-3p 0 1 0
chr1:154265257|154265418 hsa-miR-204-3p 1 0 0
chr1:154265257|154265418 hsa-miR-1229-5p 1 0 0
chr1:154265257|154265418 hsa-miR-3691-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6771-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6847-5p 0 1 0
chr1:154265257|154265418 hsa-miR-149-3p 1 0 0
chr1:154265257|154265418 hsa-miR-4661-3p 0 1 0
chr1:154265257|154265418 hsa-miR-335-3p 0 1 0
chr1:154265257|154265418 hsa-miR-651-3p 0 1 0
chr1:154265257|154265418 hsa-miR-6769b-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6743-5p 0 1 0
chr1:154265257|154265418 hsa-miR-6819-5p 1 0 0
chr1:154265257|154265418 hsa-miR-1249-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6779-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6780a-5p 1 0 0
chr1:154265257|154265418 hsa-miR-6797-5p 1 0 0
chr1:154265257|154265418 hsa-miR-7111-5p 1 0 0
chr1:154265257|154265418 hsa-miR-4728-5p 1 0 0
chr1:154265257|154265418 hsa-miR-5196-5p 1 1 0
chr1:154265257|154265418 hsa-miR-6780b-5p 1 0 0
chr1:154265257|154265418 hsa-miR-4701-3p 1 0 0
chr1:154265257|154265418 hsa-miR-6883-5p 1 0 0
chr1:154265257|154265418 hsa-miR-4769-5p 1 0 0
chr1:154265257|154265418 hsa-miR-4646-5p 1 0 0
chr1:154265257|154265418 hsa-miR-4747-5p 0 1 0
chr1:154265257|154265418 hsa-miR-6876-5p 1 0 0
chr1:154265257|154265418 hsa-miR-130a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:154265257|154265418
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence LPVYALGSFPSEVHISFSSAIRNTDGKEF
Nucleotide Sequence TTGCCTGTCTATGCCCTTGGATCCTTCCCATCAGAGGTACACATTTCCTTCTCCTCTGCTATCAGGAACACTGATGGAAAAGAGTTTTAG
CircID chr1:154265257|154265418
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MSMPLDPSHQRYTFPSPLLSGTLMEKSFRSSVLEWPNHK
Nucleotide Sequence CTGTCTATGCCCTTGGATCCTTCCCATCAGAGGTACACATTTCCTTCTCCTCTGCTATCAGGAACACTGATGGAAAAGAGTTTTAGAAGCAGTGTACTAGAGTGGCCAAATCACAAATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab