CircRNA Information

General Information
circRNA Basic Information
CircID chr1:154273532|154273837
Strand -
CircType exon
Host Gene ENSG00000143575.13;
Algorism CIRI2;
Sequence CTAGTACGAGATTTCAATAGCATCTTCAGCGATATGGGGGCCTGGACCTTGCCTTCCCATCCTCCTGGTGTGTGGCTTTCCCTAAGGGGCAACCTGTGGTTTCTGGTGGGTTGGTGGGTGAAATAAAGAGCCTGCAGGGAGTAGCTGGGGGATGGGAAGTGTGAGAAGACTGATGATTTCAGAGAGATTAATAGAGCCCAAGTCCTTTCCCATCCCAGCAAACACCTGCCACCTTTCTGCAGAACTTCCAGGTCCTGAGTCAGAGACACCTGGTGAGAGACTACGGGAGGGACAGACACTTCGGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:154273532|154273837 hsa-miR-216a-5p 0 0 1
chr1:154273532|154273837 hsa-miR-216a-3p 0 0 1
chr1:154273532|154273837 hsa-miR-345-5p 0 0 1
chr1:154273532|154273837 hsa-miR-345-3p 0 0 1
chr1:154273532|154273837 hsa-miR-484 0 0 1
chr1:154273532|154273837 hsa-miR-492 0 0 1
chr1:154273532|154273837 hsa-miR-510-5p 0 0 1
chr1:154273532|154273837 hsa-miR-510-3p 0 0 1
chr1:154273532|154273837 hsa-miR-593-5p 0 0 1
chr1:154273532|154273837 hsa-miR-593-3p 0 0 1
chr1:154273532|154273837 hsa-miR-619-5p 0 0 1
chr1:154273532|154273837 hsa-miR-619-3p 0 0 1
chr1:154273532|154273837 hsa-miR-622 0 0 1
chr1:154273532|154273837 hsa-miR-631 0 0 1
chr1:154273532|154273837 hsa-miR-635 0 1 1
chr1:154273532|154273837 hsa-miR-298 0 0 1
chr1:154273532|154273837 hsa-miR-665 1 1 1
chr1:154273532|154273837 hsa-miR-216b-5p 0 0 1
chr1:154273532|154273837 hsa-miR-216b-3p 0 0 1
chr1:154273532|154273837 hsa-miR-942-5p 0 0 1
chr1:154273532|154273837 hsa-miR-942-3p 0 0 1
chr1:154273532|154273837 hsa-miR-1226-5p 0 0 1
chr1:154273532|154273837 hsa-miR-1226-3p 0 0 1
chr1:154273532|154273837 hsa-miR-1229-5p 0 0 1
chr1:154273532|154273837 hsa-miR-1229-3p 0 0 1
chr1:154273532|154273837 hsa-miR-1205 0 1 1
chr1:154273532|154273837 hsa-miR-1184 0 0 1
chr1:154273532|154273837 hsa-miR-361-3p 0 0 1
chr1:154273532|154273837 hsa-miR-140-3p 0 0 1
chr1:154273532|154273837 hsa-miR-1207-5p 1 0 1
chr1:154273532|154273837 hsa-miR-342-3p 0 0 1
chr1:154273532|154273837 hsa-miR-362-3p 0 0 1
chr1:154273532|154273837 hsa-miR-544 0 0 1
chr1:154273532|154273837 hsa-miR-329 0 0 1
chr1:154273532|154273837 hsa-miR-203 0 0 1
chr1:154273532|154273837 hsa-miR-657 1 0 0
chr1:154273532|154273837 hsa-miR-940 1 1 0
chr1:154273532|154273837 hsa-miR-1299 0 1 0
chr1:154273532|154273837 hsa-miR-3153 0 1 0
chr1:154273532|154273837 hsa-miR-378c 1 0 0
chr1:154273532|154273837 hsa-miR-3661 0 1 0
chr1:154273532|154273837 hsa-miR-1268b 1 0 0
chr1:154273532|154273837 hsa-miR-2392 0 1 0
chr1:154273532|154273837 hsa-miR-3978 0 1 0
chr1:154273532|154273837 hsa-miR-4736 0 1 0
chr1:154273532|154273837 hsa-miR-4739 1 0 0
chr1:154273532|154273837 hsa-miR-5685 1 1 0
chr1:154273532|154273837 hsa-miR-5690 0 1 0
chr1:154273532|154273837 hsa-miR-8083 0 1 0
chr1:154273532|154273837 hsa-miR-12125 0 1 0
chr1:154273532|154273837 hsa-miR-146a-3p 0 1 0
chr1:154273532|154273837 hsa-miR-6894-5p 1 1 0
chr1:154273532|154273837 hsa-miR-6822-3p 0 1 0
chr1:154273532|154273837 hsa-miR-6728-5p 0 1 0
chr1:154273532|154273837 hsa-miR-3934-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6757-5p 0 1 0
chr1:154273532|154273837 hsa-miR-4695-5p 1 0 0
chr1:154273532|154273837 hsa-miR-4722-5p 1 0 0
chr1:154273532|154273837 hsa-miR-6730-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6873-3p 1 1 0
chr1:154273532|154273837 hsa-miR-6817-3p 0 1 0
chr1:154273532|154273837 hsa-miR-3605-5p 0 1 0
chr1:154273532|154273837 hsa-miR-656-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6798-5p 1 1 0
chr1:154273532|154273837 hsa-miR-6850-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6740-3p 0 1 0
chr1:154273532|154273837 hsa-miR-204-3p 0 1 0
chr1:154273532|154273837 hsa-miR-4640-5p 1 0 0
chr1:154273532|154273837 hsa-miR-7113-3p 1 1 0
chr1:154273532|154273837 hsa-miR-4733-3p 0 1 0
chr1:154273532|154273837 hsa-miR-6824-5p 1 0 0
chr1:154273532|154273837 hsa-miR-3162-5p 1 0 0
chr1:154273532|154273837 hsa-miR-3158-5p 0 1 0
chr1:154273532|154273837 hsa-miR-5010-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6870-3p 0 1 0
chr1:154273532|154273837 hsa-miR-3120-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6895-3p 0 1 0
chr1:154273532|154273837 hsa-miR-5189-3p 0 1 0
chr1:154273532|154273837 hsa-miR-6859-3p 1 0 0
chr1:154273532|154273837 hsa-miR-6729-3p 0 1 0
chr1:154273532|154273837 hsa-miR-4763-3p 1 0 0
chr1:154273532|154273837 hsa-miR-6769b-5p 1 0 0
chr1:154273532|154273837 hsa-miR-6865-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6726-5p 1 0 0
chr1:154273532|154273837 hsa-miR-6756-5p 1 0 0
chr1:154273532|154273837 hsa-miR-7111-5p 1 0 0
chr1:154273532|154273837 hsa-miR-5196-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6780b-5p 0 1 0
chr1:154273532|154273837 hsa-miR-1909-3p 1 0 0
chr1:154273532|154273837 hsa-miR-6794-5p 1 0 0
chr1:154273532|154273837 hsa-miR-6848-5p 1 0 0
chr1:154273532|154273837 hsa-miR-6858-5p 1 0 0
chr1:154273532|154273837 hsa-miR-6799-3p 1 0 0
chr1:154273532|154273837 hsa-miR-377-5p 0 1 0
chr1:154273532|154273837 hsa-miR-3173-3p 1 0 0
chr1:154273532|154273837 hsa-miR-4747-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6753-3p 0 1 0
chr1:154273532|154273837 hsa-miR-6511a-3p 0 1 0
chr1:154273532|154273837 hsa-miR-6511b-3p 0 1 0
chr1:154273532|154273837 hsa-miR-7114-3p 1 0 0
chr1:154273532|154273837 hsa-miR-509-5p 1 0 0
chr1:154273532|154273837 hsa-miR-6506-5p 0 1 0
chr1:154273532|154273837 hsa-miR-6733-5p 0 1 0
chr1:154273532|154273837 hsa-miR-9902 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:154273532|154273837
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MGAWTLPSHPPGVWLSLRGNLWFLVGWWVK
Nucleotide Sequence ATGGGGGCCTGGACCTTGCCTTCCCATCCTCCTGGTGTGTGGCTTTCCCTAAGGGGCAACCTGTGGTTTCTGGTGGGTTGGTGGGTGAAATAA
CircID chr1:154273532|154273837
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MGDGKCEKTDDFREINRAQVLSHPSKHLPPFCRTSRS
Nucleotide Sequence CTGGGGGATGGGAAGTGTGAGAAGACTGATGATTTCAGAGAGATTAATAGAGCCCAAGTCCTTTCCCATCCCAGCAAACACCTGCCACCTTTCTGCAGAACTTCCAGGTCCTGA
CircID chr1:154273532|154273837
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MGSVRRLMISERLIEPKSFPIPANTCHLSAELPGPESETPGERLREGQTLR
Nucleotide Sequence ATGGGAAGTGTGAGAAGACTGATGATTTCAGAGAGATTAATAGAGCCCAAGTCCTTTCCCATCCCAGCAAACACCTGCCACCTTTCTGCAGAACTTCCAGGTCCTGAGTCAGAGACACCTGGTGAGAGACTACGGGAGGGACAGACACTTCGG
CircID chr1:154273532|154273837
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MDLAFPSSWCVAFPKGQPVVSGGLVGEIKSLQGVAGGWEV
Nucleotide Sequence CTGGACCTTGCCTTCCCATCCTCCTGGTGTGTGGCTTTCCCTAAGGGGCAACCTGTGGTTTCTGGTGGGTTGGTGGGTGAAATAAAGAGCCTGCAGGGAGTAGCTGGGGGATGGGAAGTGTGA
CircID chr1:154273532|154273837
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MGKDLGSINLSEIISLLTLPIPQLLPAGSLFHPPTHQKPQVAP
Nucleotide Sequence ATGGGAAAGGACTTGGGCTCTATTAATCTCTCTGAAATCATCAGTCTTCTCACACTTCCCATCCCCCAGCTACTCCCTGCAGGCTCTTTATTTCACCCACCAACCCACCAGAAACCACAGGTTGCCCCTTAG
CircID chr1:154273532|154273837
ORF Type ORF6
Protein Length 87
Nucleotide Length 261
Protein Sequence MTQDLEVLQKGGRCLLGWERTWALLISLKSSVFSHFPSPSYSLQALYFTHQPTRNHRLPLRESHTPGGWEGKVQAPISLKMLLKSRT
Nucleotide Sequence CTGACTCAGGACCTGGAAGTTCTGCAGAAAGGTGGCAGGTGTTTGCTGGGATGGGAAAGGACTTGGGCTCTATTAATCTCTCTGAAATCATCAGTCTTCTCACACTTCCCATCCCCCAGCTACTCCCTGCAGGCTCTTTATTTCACCCACCAACCCACCAGAAACCACAGGTTGCCCCTTAGGGAAAGCCACACACCAGGAGGATGGGAAGGCAAGGTCCAGGCCCCCATATCGCTGAAGATGCTATTGAAATCTCGTACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab