CircRNA Information

General Information
circRNA Basic Information
CircID chr1:154584127|154584366
Strand +
CircType exon
Host Gene ENSG00000160710.14;
Algorism CIRI2;
Sequence CCCTCTACTTCCCCTCTTTCCCTTCTGAGATTCTTTCCTTGTGATCTGAATGTCTCCTTTTCCCCCTCAGAGGGCAAAGAGGTGAACATAAAGGATTTGGTGAAACATTTGTAAGGGTAGGAGTTGAAAACTGCAGTTCCCAGTGCCACGGAAGTGTGATTGGAGCCTGCAGATAATGCCCAGCCATCCTCCCATCCTGCACTTTAGCCAGCTGCAGGGCGGGCAAGGCAAGGAAAGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:154584127|154584366 hsa-miR-17-5p 0 0 1
chr1:154584127|154584366 hsa-miR-17-3p 0 0 1
chr1:154584127|154584366 hsa-miR-20a-5p 0 0 1
chr1:154584127|154584366 hsa-miR-20a-3p 0 0 1
chr1:154584127|154584366 hsa-miR-93-5p 0 0 1
chr1:154584127|154584366 hsa-miR-93-3p 0 0 1
chr1:154584127|154584366 hsa-miR-106a-5p 0 0 1
chr1:154584127|154584366 hsa-miR-106a-3p 0 0 1
chr1:154584127|154584366 hsa-miR-197-5p 0 0 1
chr1:154584127|154584366 hsa-miR-197-3p 0 0 1
chr1:154584127|154584366 hsa-miR-181c-5p 0 0 1
chr1:154584127|154584366 hsa-miR-181c-3p 0 0 1
chr1:154584127|154584366 hsa-miR-216a-5p 0 0 1
chr1:154584127|154584366 hsa-miR-216a-3p 0 0 1
chr1:154584127|154584366 hsa-miR-186-5p 0 0 1
chr1:154584127|154584366 hsa-miR-186-3p 0 0 1
chr1:154584127|154584366 hsa-miR-106b-5p 0 0 1
chr1:154584127|154584366 hsa-miR-106b-3p 0 0 1
chr1:154584127|154584366 hsa-miR-20b-5p 0 0 1
chr1:154584127|154584366 hsa-miR-20b-3p 0 0 1
chr1:154584127|154584366 hsa-miR-484 0 1 1
chr1:154584127|154584366 hsa-miR-181d-5p 0 0 1
chr1:154584127|154584366 hsa-miR-181d-3p 0 0 1
chr1:154584127|154584366 hsa-miR-519d-5p 0 0 1
chr1:154584127|154584366 hsa-miR-519d-3p 0 0 1
chr1:154584127|154584366 hsa-miR-583 0 0 1
chr1:154584127|154584366 hsa-miR-612 0 1 1
chr1:154584127|154584366 hsa-miR-625-5p 0 0 1
chr1:154584127|154584366 hsa-miR-625-3p 0 0 1
chr1:154584127|154584366 hsa-miR-1301-5p 0 0 1
chr1:154584127|154584366 hsa-miR-1301-3p 0 0 1
chr1:154584127|154584366 hsa-miR-874-5p 0 0 1
chr1:154584127|154584366 hsa-miR-874-3p 0 0 1
chr1:154584127|154584366 hsa-miR-1205 0 0 1
chr1:154584127|154584366 hsa-miR-1286 0 0 1
chr1:154584127|154584366 hsa-miR-1305 0 0 1
chr1:154584127|154584366 hsa-miR-1292-5p 0 0 1
chr1:154584127|154584366 hsa-miR-1292-3p 0 0 1
chr1:154584127|154584366 hsa-miR-513b-5p 0 0 1
chr1:154584127|154584366 hsa-miR-513b-3p 0 0 1
chr1:154584127|154584366 hsa-miR-1184 0 1 1
chr1:154584127|154584366 hsa-miR-423-5p 0 0 1
chr1:154584127|154584366 hsa-miR-501-5p 0 0 1
chr1:154584127|154584366 hsa-miR-502-5p 0 0 1
chr1:154584127|154584366 hsa-miR-1207-3p 0 0 1
chr1:154584127|154584366 hsa-miR-524-5p 0 0 1
chr1:154584127|154584366 hsa-miR-509-3-5p 0 0 1
chr1:154584127|154584366 hsa-miR-509-5p 0 0 1
chr1:154584127|154584366 hsa-miR-519b-3p 0 0 1
chr1:154584127|154584366 hsa-miR-519c-3p 0 0 1
chr1:154584127|154584366 hsa-miR-520d-5p 0 0 1
chr1:154584127|154584366 hsa-miR-181a 0 0 1
chr1:154584127|154584366 hsa-miR-181b 0 0 1
chr1:154584127|154584366 hsa-miR-500 0 0 1
chr1:154584127|154584366 hsa-miR-1285 0 0 1
chr1:154584127|154584366 hsa-miR-519a 0 0 1
chr1:154584127|154584366 hsa-miR-650 1 0 0
chr1:154584127|154584366 hsa-miR-3132 1 0 0
chr1:154584127|154584366 hsa-miR-3153 0 1 0
chr1:154584127|154584366 hsa-miR-3154 0 1 0
chr1:154584127|154584366 hsa-miR-4262 0 1 0
chr1:154584127|154584366 hsa-miR-4271 0 1 0
chr1:154584127|154584366 hsa-miR-4418 0 1 0
chr1:154584127|154584366 hsa-miR-4428 0 1 0
chr1:154584127|154584366 hsa-miR-4487 1 1 0
chr1:154584127|154584366 hsa-miR-2392 0 1 0
chr1:154584127|154584366 hsa-miR-4689 1 0 0
chr1:154584127|154584366 hsa-miR-4734 0 1 0
chr1:154584127|154584366 hsa-miR-5047 0 1 0
chr1:154584127|154584366 hsa-miR-6090 1 0 0
chr1:154584127|154584366 hsa-miR-6124 1 1 0
chr1:154584127|154584366 hsa-miR-6133 1 0 0
chr1:154584127|154584366 hsa-miR-7515 0 1 0
chr1:154584127|154584366 hsa-miR-8059 0 1 0
chr1:154584127|154584366 hsa-miR-8085 1 0 0
chr1:154584127|154584366 hsa-miR-12119 0 1 0
chr1:154584127|154584366 hsa-miR-6734-5p 0 1 0
chr1:154584127|154584366 hsa-miR-6894-5p 0 1 0
chr1:154584127|154584366 hsa-miR-6822-3p 0 1 0
chr1:154584127|154584366 hsa-miR-5187-5p 1 0 0
chr1:154584127|154584366 hsa-miR-4695-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6746-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6842-3p 0 1 0
chr1:154584127|154584366 hsa-miR-1915-5p 1 1 0
chr1:154584127|154584366 hsa-miR-3605-5p 0 1 0
chr1:154584127|154584366 hsa-miR-6760-5p 1 1 0
chr1:154584127|154584366 hsa-miR-6881-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6810-5p 1 0 0
chr1:154584127|154584366 hsa-miR-30b-3p 0 1 0
chr1:154584127|154584366 hsa-miR-4707-3p 0 1 0
chr1:154584127|154584366 hsa-miR-877-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6830-5p 0 1 0
chr1:154584127|154584366 hsa-miR-4715-5p 0 1 0
chr1:154584127|154584366 hsa-miR-5010-5p 0 1 0
chr1:154584127|154584366 hsa-miR-5584-5p 0 1 0
chr1:154584127|154584366 hsa-miR-1288-5p 0 1 0
chr1:154584127|154584366 hsa-miR-1273h-5p 0 1 0
chr1:154584127|154584366 hsa-miR-6870-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6779-5p 1 1 0
chr1:154584127|154584366 hsa-miR-6797-5p 0 1 0
chr1:154584127|154584366 hsa-miR-7111-5p 1 0 0
chr1:154584127|154584366 hsa-miR-5196-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6780b-5p 1 1 0
chr1:154584127|154584366 hsa-miR-328-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6738-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6794-5p 0 1 0
chr1:154584127|154584366 hsa-miR-6795-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6887-5p 1 0 0
chr1:154584127|154584366 hsa-miR-6758-5p 0 1 0
chr1:154584127|154584366 hsa-miR-6799-3p 0 1 0
chr1:154584127|154584366 hsa-miR-6891-5p 1 0 0
chr1:154584127|154584366 hsa-miR-4716-3p 1 1 0
chr1:154584127|154584366 hsa-miR-10394-5p 0 1 0
chr1:154584127|154584366 hsa-miR-664a-5p 0 1 0
chr1:154584127|154584366 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:154584127|154584366
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MRFFPCDLNVSFSPSEGKEVNIKDLVKHL
Nucleotide Sequence CTGAGATTCTTTCCTTGTGATCTGAATGTCTCCTTTTCCCCCTCAGAGGGCAAAGAGGTGAACATAAAGGATTTGGTGAAACATTTGTAA
CircID chr1:154584127|154584366
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MQFPVPRKCDWSLQIMPSHPPILHFSQLQGGQGKES
Nucleotide Sequence CTGCAGTTCCCAGTGCCACGGAAGTGTGATTGGAGCCTGCAGATAATGCCCAGCCATCCTCCCATCCTGCACTTTAGCCAGCTGCAGGGCGGGCAAGGCAAGGAAAGC
CircID chr1:154584127|154584366
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MPCPPCSWLKCRMGGWLGIICRLQSHFRGTGNCSFQLLPLQMFHQILYVHLFAL
Nucleotide Sequence TTGCCTTGCCCGCCCTGCAGCTGGCTAAAGTGCAGGATGGGAGGATGGCTGGGCATTATCTGCAGGCTCCAATCACACTTCCGTGGCACTGGGAACTGCAGTTTTCAACTCCTACCCTTACAAATGTTTCACCAAATCCTTTATGTTCACCTCTTTGCCCTCTGA
CircID chr1:154584127|154584366
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MGTAVFNSYPYKCFTKSFMFTSLPSEGEKETFRSQGKNLRRERGEVE
Nucleotide Sequence CTGGGAACTGCAGTTTTCAACTCCTACCCTTACAAATGTTTCACCAAATCCTTTATGTTCACCTCTTTGCCCTCTGAGGGGGAAAAGGAGACATTCAGATCACAAGGAAAGAATCTCAGAAGGGAAAGAGGGGAAGTAGAG
CircID chr1:154584127|154584366
ORF Type ORF5
Protein Length 73
Nucleotide Length 222
Protein Sequence MPALQLAKVQDGRMAGHYLQAPITLPWHWELQFSTPTLTNVSPNPLCSPLCPLRGKRRHSDHKERISEGKEGK
Nucleotide Sequence TTGCCCGCCCTGCAGCTGGCTAAAGTGCAGGATGGGAGGATGGCTGGGCATTATCTGCAGGCTCCAATCACACTTCCGTGGCACTGGGAACTGCAGTTTTCAACTCCTACCCTTACAAATGTTTCACCAAATCCTTTATGTTCACCTCTTTGCCCTCTGAGGGGGAAAAGGAGACATTCAGATCACAAGGAAAGAATCTCAGAAGGGAAAGAGGGGAAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab