CircRNA Information

General Information
circRNA Basic Information
CircID chr1:154979672|154979820
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTACCTGCATAAGATGCCTGAAATCTTTACCCCCAGTCCACACTCCAGACCAATTAAGAATCCTTAAGAATGACTCAGGCAGGCATCAGTACTTGTAAAGCTCCCCAGGTGATTCCAACGCCCAAGCCAAGTTAAGAACAGCTGAAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:154979672|154979820 hsa-miR-122-5p 0 0 1
chr1:154979672|154979820 hsa-miR-122-3p 0 0 1
chr1:154979672|154979820 hsa-miR-585-5p 0 0 1
chr1:154979672|154979820 hsa-miR-585-3p 0 0 1
chr1:154979672|154979820 hsa-miR-635 0 0 1
chr1:154979672|154979820 hsa-miR-637 1 1 1
chr1:154979672|154979820 hsa-miR-657 0 0 1
chr1:154979672|154979820 hsa-miR-920 0 1 1
chr1:154979672|154979820 hsa-miR-939-5p 0 0 1
chr1:154979672|154979820 hsa-miR-939-3p 0 0 1
chr1:154979672|154979820 hsa-miR-1278 0 0 1
chr1:154979672|154979820 hsa-miR-1288-5p 0 0 1
chr1:154979672|154979820 hsa-miR-1288-3p 0 0 1
chr1:154979672|154979820 hsa-miR-574-5p 0 0 1
chr1:154979672|154979820 hsa-miR-1207-3p 0 0 1
chr1:154979672|154979820 hsa-miR-491-3p 0 0 1
chr1:154979672|154979820 hsa-miR-1269 0 0 1
chr1:154979672|154979820 hsa-miR-1268 0 0 1
chr1:154979672|154979820 hsa-miR-516b 0 0 1
chr1:154979672|154979820 hsa-miR-1201 0 0 1
chr1:154979672|154979820 hsa-miR-661 1 0 0
chr1:154979672|154979820 hsa-miR-1200 0 1 0
chr1:154979672|154979820 hsa-miR-1268a 1 0 0
chr1:154979672|154979820 hsa-miR-3911 1 1 0
chr1:154979672|154979820 hsa-miR-1268b 1 0 0
chr1:154979672|154979820 hsa-miR-4481 1 0 0
chr1:154979672|154979820 hsa-miR-4491 1 0 0
chr1:154979672|154979820 hsa-miR-4507 1 0 0
chr1:154979672|154979820 hsa-miR-1587 1 0 0
chr1:154979672|154979820 hsa-miR-4651 1 0 0
chr1:154979672|154979820 hsa-miR-4658 1 0 0
chr1:154979672|154979820 hsa-miR-4748 1 0 0
chr1:154979672|154979820 hsa-miR-5192 1 0 0
chr1:154979672|154979820 hsa-miR-5787 1 0 0
chr1:154979672|154979820 hsa-miR-7706 1 0 0
chr1:154979672|154979820 hsa-miR-8089 1 0 0
chr1:154979672|154979820 hsa-miR-26b-3p 1 1 0
chr1:154979672|154979820 hsa-miR-504-3p 1 0 0
chr1:154979672|154979820 hsa-miR-6747-5p 1 1 0
chr1:154979672|154979820 hsa-miR-4433a-3p 1 0 0
chr1:154979672|154979820 hsa-miR-6857-5p 1 0 0
chr1:154979672|154979820 hsa-miR-4687-3p 1 0 0
chr1:154979672|154979820 hsa-miR-8071 1 0 0
chr1:154979672|154979820 hsa-miR-7114-5p 1 0 0
chr1:154979672|154979820 hsa-miR-1301-3p 1 0 0
chr1:154979672|154979820 hsa-miR-6741-5p 1 0 0
chr1:154979672|154979820 hsa-miR-197-5p 1 0 0
chr1:154979672|154979820 hsa-miR-432-5p 1 0 0
chr1:154979672|154979820 hsa-miR-3663-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6742-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6772-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6881-5p 0 1 0
chr1:154979672|154979820 hsa-miR-6765-3p 1 0 0
chr1:154979672|154979820 hsa-miR-6835-5p 0 1 0
chr1:154979672|154979820 hsa-miR-3614-5p 1 0 0
chr1:154979672|154979820 hsa-miR-4787-5p 1 0 0
chr1:154979672|154979820 hsa-miR-937-5p 1 0 0
chr1:154979672|154979820 hsa-miR-541-5p 0 1 0
chr1:154979672|154979820 hsa-miR-181d-3p 1 0 0
chr1:154979672|154979820 hsa-miR-6812-5p 1 0 0
chr1:154979672|154979820 hsa-miR-1343-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6737-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6752-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6756-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6803-5p 1 1 0
chr1:154979672|154979820 hsa-miR-6819-5p 1 0 0
chr1:154979672|154979820 hsa-miR-7110-5p 1 0 0
chr1:154979672|154979820 hsa-miR-10401-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6751-5p 1 1 0
chr1:154979672|154979820 hsa-miR-6763-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6774-5p 0 1 0
chr1:154979672|154979820 hsa-miR-3620-5p 1 0 0
chr1:154979672|154979820 hsa-miR-3198 1 0 0
chr1:154979672|154979820 hsa-miR-3940-5p 1 0 0
chr1:154979672|154979820 hsa-miR-6855-5p 1 0 0
chr1:154979672|154979820 hsa-miR-4667-5p 0 1 0
chr1:154979672|154979820 hsa-miR-6790-5p 1 1 0
chr1:154979672|154979820 hsa-miR-302d-3p 0 1 0
chr1:154979672|154979820 hsa-miR-6791-5p 1 0 0
chr1:154979672|154979820 hsa-miR-769-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:154979672|154979820
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MKSLPPVHTPDQLRILKNDSGRHQYL
Nucleotide Sequence CTGAAATCTTTACCCCCAGTCCACACTCCAGACCAATTAAGAATCCTTAAGAATGACTCAGGCAGGCATCAGTACTTGTAA
CircID chr1:154979672|154979820
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MPESFLRILNWSGVWTGGKDFRHLMQV
Nucleotide Sequence CTGCCTGAGTCATTCTTAAGGATTCTTAATTGGTCTGGAGTGTGGACTGGGGGTAAAGATTTCAGGCATCTTATGCAGGTA
CircID chr1:154979672|154979820
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MFLTWLGRWNHLGSFTSTDACLSHS
Nucleotide Sequence CTGTTCTTAACTTGGCTTGGGCGTTGGAATCACCTGGGGAGCTTTACAAGTACTGATGCCTGCCTGAGTCATTCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab