CircRNA Information

General Information
circRNA Basic Information
CircID chr1:155054165|155054482
Strand -
CircType exon
Host Gene ENSG00000143537.12;
Algorism CIRI2;
Sequence CAGGGAAGAGTGCGGGGATATGCAGGCTCCTGGGTGTCCATCTGCACCTGCTCTGGGCTCAGGTATACTGGGCGGATTTAATGACAGTAGAGAAAGTAAGGAGACCCAGGCATGGAGCTGAAATGTTCTCTGACTTTCTTTTTTCTTAGAGGCTTGGTGGTCCTGACCCCAGAGAGAAGCTATACCCTGGAGCAGGGGCCTGGGGACCTTCAGGGTCCTCCCATTATTTCGCGAATCCAAGATCTCCACCTGCCAGGCCACACCTGTGCCCTGAGCTGGCGGGAATCTGTACACACTCAGAAGCCACCAGAGCACCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:155054165|155054482 hsa-miR-326 0 0 1
chr1:155054165|155054482 hsa-miR-448 0 0 1
chr1:155054165|155054482 hsa-miR-493-5p 0 0 1
chr1:155054165|155054482 hsa-miR-493-3p 0 0 1
chr1:155054165|155054482 hsa-miR-432-5p 0 0 1
chr1:155054165|155054482 hsa-miR-432-3p 0 0 1
chr1:155054165|155054482 hsa-miR-504-5p 0 0 1
chr1:155054165|155054482 hsa-miR-504-3p 0 0 1
chr1:155054165|155054482 hsa-miR-552-5p 0 0 1
chr1:155054165|155054482 hsa-miR-552-3p 0 0 1
chr1:155054165|155054482 hsa-miR-596 0 0 1
chr1:155054165|155054482 hsa-miR-605-5p 0 0 1
chr1:155054165|155054482 hsa-miR-605-3p 0 0 1
chr1:155054165|155054482 hsa-miR-616-5p 0 0 1
chr1:155054165|155054482 hsa-miR-616-3p 0 0 1
chr1:155054165|155054482 hsa-miR-620 0 0 1
chr1:155054165|155054482 hsa-miR-637 1 0 1
chr1:155054165|155054482 hsa-miR-661 1 0 1
chr1:155054165|155054482 hsa-miR-665 0 0 1
chr1:155054165|155054482 hsa-miR-942-5p 0 0 1
chr1:155054165|155054482 hsa-miR-942-3p 0 0 1
chr1:155054165|155054482 hsa-miR-1236-5p 0 0 1
chr1:155054165|155054482 hsa-miR-1236-3p 0 0 1
chr1:155054165|155054482 hsa-miR-663b 0 0 1
chr1:155054165|155054482 hsa-miR-1266-5p 0 0 1
chr1:155054165|155054482 hsa-miR-1266-3p 0 0 1
chr1:155054165|155054482 hsa-miR-1270 0 0 1
chr1:155054165|155054482 hsa-miR-1225-3p 0 0 1
chr1:155054165|155054482 hsa-miR-615-5p 0 0 1
chr1:155054165|155054482 hsa-miR-193a-5p 0 0 1
chr1:155054165|155054482 hsa-miR-574-5p 0 0 1
chr1:155054165|155054482 hsa-miR-875-5p 0 0 1
chr1:155054165|155054482 hsa-miR-1207-5p 1 0 1
chr1:155054165|155054482 hsa-miR-342-5p 0 0 1
chr1:155054165|155054482 hsa-miR-330-5p 1 0 1
chr1:155054165|155054482 hsa-miR-1274a 0 0 1
chr1:155054165|155054482 hsa-miR-1233 0 0 1
chr1:155054165|155054482 hsa-miR-644 0 0 1
chr1:155054165|155054482 hsa-miR-1254 0 0 1
chr1:155054165|155054482 hsa-miR-638 1 0 0
chr1:155054165|155054482 hsa-miR-760 1 0 0
chr1:155054165|155054482 hsa-miR-1293 1 0 0
chr1:155054165|155054482 hsa-miR-2861 1 0 0
chr1:155054165|155054482 hsa-miR-3907 1 0 0
chr1:155054165|155054482 hsa-miR-3911 1 0 0
chr1:155054165|155054482 hsa-miR-4456 1 0 0
chr1:155054165|155054482 hsa-miR-4739 1 0 0
chr1:155054165|155054482 hsa-miR-92a-2-5p 1 0 0
chr1:155054165|155054482 hsa-miR-7155-5p 1 0 0
chr1:155054165|155054482 hsa-miR-3194-3p 1 0 0
chr1:155054165|155054482 hsa-miR-125a-3p 1 0 0
chr1:155054165|155054482 hsa-miR-8071 1 0 0
chr1:155054165|155054482 hsa-miR-874-5p 1 0 0
chr1:155054165|155054482 hsa-miR-197-5p 1 0 0
chr1:155054165|155054482 hsa-miR-7108-5p 1 0 0
chr1:155054165|155054482 hsa-miR-6793-5p 1 0 0
chr1:155054165|155054482 hsa-miR-615-3p 1 0 0
chr1:155054165|155054482 hsa-miR-3934-3p 1 0 0
chr1:155054165|155054482 hsa-miR-1226-5p 1 0 0
chr1:155054165|155054482 hsa-miR-6763-3p 1 0 0
chr1:155054165|155054482 hsa-miR-5004-3p 1 0 0
chr1:155054165|155054482 hsa-miR-7161-3p 1 0 0
chr1:155054165|155054482 hsa-miR-3158-3p 1 0 0
chr1:155054165|155054482 hsa-miR-597-3p 1 0 0
chr1:155054165|155054482 hsa-miR-1296-5p 1 0 0
chr1:155054165|155054482 hsa-miR-4763-3p 1 0 0
chr1:155054165|155054482 hsa-miR-6778-5p 1 0 0
chr1:155054165|155054482 hsa-miR-6775-5p 1 0 0
chr1:155054165|155054482 hsa-miR-6756-5p 1 0 0
chr1:155054165|155054482 hsa-miR-6769a-5p 1 0 0
chr1:155054165|155054482 hsa-miR-6819-5p 1 0 0
chr1:155054165|155054482 hsa-miR-5189-5p 1 0 0
chr1:155054165|155054482 hsa-miR-1237-5p 1 0 0
chr1:155054165|155054482 hsa-miR-4632-5p 1 0 0
chr1:155054165|155054482 hsa-miR-4685-5p 1 0 0
chr1:155054165|155054482 hsa-miR-675-5p 1 0 0
chr1:155054165|155054482 hsa-miR-939-5p 1 0 0
chr1:155054165|155054482 hsa-miR-10396a-3p 1 0 0
chr1:155054165|155054482 hsa-miR-10396b-3p 1 0 0
chr1:155054165|155054482 hsa-miR-4757-5p 1 0 0
chr1:155054165|155054482 hsa-miR-6805-3p 1 0 0
chr1:155054165|155054482 hsa-miR-6824-3p 1 0 0
chr1:155054165|155054482 hsa-miR-6843-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:155054165|155054482
ORF Type ORF1
Protein Length 69
Nucleotide Length 207
Protein Sequence MELKCSLTFFFLRGLVVLTPERSYTLEQGPGDLQGPPIISRIQDLHLPGHTCALSWRESVHTQKPPEHP
Nucleotide Sequence ATGGAGCTGAAATGTTCTCTGACTTTCTTTTTTCTTAGAGGCTTGGTGGTCCTGACCCCAGAGAGAAGCTATACCCTGGAGCAGGGGCCTGGGGACCTTCAGGGTCCTCCCATTATTTCGCGAATCCAAGATCTCCACCTGCCAGGCCACACCTGTGCCCTGAGCTGGCGGGAATCTGTACACACTCAGAAGCCACCAGAGCACCCC
CircID chr1:155054165|155054482
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MQAPGCPSAPALGSGILGGFNDSRESKETQAWS
Nucleotide Sequence ATGCAGGCTCCTGGGTGTCCATCTGCACCTGCTCTGGGCTCAGGTATACTGGGCGGATTTAATGACAGTAGAGAAAGTAAGGAGACCCAGGCATGGAGCTGA
CircID chr1:155054165|155054482
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MGVHLHLLWAQVYWADLMTVEKVRRPRHGAEMFSDFLFS
Nucleotide Sequence CTGGGTGTCCATCTGCACCTGCTCTGGGCTCAGGTATACTGGGCGGATTTAATGACAGTAGAGAAAGTAAGGAGACCCAGGCATGGAGCTGAAATGTTCTCTGACTTTCTTTTTTCTTAG
CircID chr1:155054165|155054482
ORF Type ORF4
Protein Length 100
Nucleotide Length 300
Protein Sequence MSVYRFPPAQGTGVAWQVEILDSRNNGRTLKVPRPLLQGIASLWGQDHQASKKKESQRTFQLHAWVSLLSLLSLNPPSIPEPRAGADGHPGACISPHSSL
Nucleotide Sequence CTGAGTGTGTACAGATTCCCGCCAGCTCAGGGCACAGGTGTGGCCTGGCAGGTGGAGATCTTGGATTCGCGAAATAATGGGAGGACCCTGAAGGTCCCCAGGCCCCTGCTCCAGGGTATAGCTTCTCTCTGGGGTCAGGACCACCAAGCCTCTAAGAAAAAAGAAAGTCAGAGAACATTTCAGCTCCATGCCTGGGTCTCCTTACTTTCTCTACTGTCATTAAATCCGCCCAGTATACCTGAGCCCAGAGCAGGTGCAGATGGACACCCAGGAGCCTGCATATCCCCGCACTCTTCCCTG
CircID chr1:155054165|155054482
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MVASECVQIPASSGHRCGLAGGDLGFAK
Nucleotide Sequence CTGGTGGCTTCTGAGTGTGTACAGATTCCCGCCAGCTCAGGGCACAGGTGTGGCCTGGCAGGTGGAGATCTTGGATTCGCGAAATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab