CircRNA Information

General Information
circRNA Basic Information
CircID chr1:155062270|155062523
Strand -
CircType exon
Host Gene ENSG00000143537.12;
Algorism CIRI2;
Sequence CCCCAAGGAAGCCACTGCCTGCCGACCCCCAGGGCCGGTGCCCATCGGGTGACCTGCCCGGCCCAGGGGCTGGAATCCCGCCCCTAGTGGTACCCTCCAGGTAGGAGGAGCCCTGGGCATGGGTGGGCGGGGCGAGTGACCTGGGGGAAAGGGGCCTCTGACTCTTTTTTCTTGGCTTCCCGCAATCCAGACCAGCGCCACCGCCTCCGACAGTGTCCTCGCTCTACCTCTGACCTCTCCGGAGGTTCCGCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:155062270|155062523 hsa-let-7b-5p 0 0 1
chr1:155062270|155062523 hsa-let-7b-3p 0 0 1
chr1:155062270|155062523 hsa-let-7c-5p 0 0 1
chr1:155062270|155062523 hsa-let-7c-3p 0 0 1
chr1:155062270|155062523 hsa-let-7d-5p 0 0 1
chr1:155062270|155062523 hsa-let-7d-3p 0 0 1
chr1:155062270|155062523 hsa-let-7e-5p 0 0 1
chr1:155062270|155062523 hsa-let-7e-3p 0 0 1
chr1:155062270|155062523 hsa-miR-98-5p 0 0 1
chr1:155062270|155062523 hsa-miR-98-3p 0 0 1
chr1:155062270|155062523 hsa-miR-34a-5p 0 0 1
chr1:155062270|155062523 hsa-miR-34a-3p 0 0 1
chr1:155062270|155062523 hsa-let-7g-5p 0 0 1
chr1:155062270|155062523 hsa-let-7g-3p 0 0 1
chr1:155062270|155062523 hsa-let-7i-5p 0 0 1
chr1:155062270|155062523 hsa-let-7i-3p 0 0 1
chr1:155062270|155062523 hsa-miR-449a 0 0 1
chr1:155062270|155062523 hsa-miR-611 0 0 1
chr1:155062270|155062523 hsa-miR-619-5p 0 0 1
chr1:155062270|155062523 hsa-miR-619-3p 0 0 1
chr1:155062270|155062523 hsa-miR-637 0 0 1
chr1:155062270|155062523 hsa-miR-449b-5p 0 0 1
chr1:155062270|155062523 hsa-miR-449b-3p 0 0 1
chr1:155062270|155062523 hsa-miR-668-5p 0 0 1
chr1:155062270|155062523 hsa-miR-668-3p 0 0 1
chr1:155062270|155062523 hsa-miR-1203 0 0 1
chr1:155062270|155062523 hsa-miR-1291 0 0 1
chr1:155062270|155062523 hsa-miR-1197 0 0 1
chr1:155062270|155062523 hsa-miR-671-5p 0 0 1
chr1:155062270|155062523 hsa-miR-361-3p 0 0 1
chr1:155062270|155062523 hsa-miR-502-5p 0 0 1
chr1:155062270|155062523 hsa-miR-331-3p 0 0 1
chr1:155062270|155062523 hsa-miR-34c-5p 0 0 1
chr1:155062270|155062523 hsa-miR-516a-3p 0 0 1
chr1:155062270|155062523 hsa-miR-886-5p 0 0 1
chr1:155062270|155062523 hsa-let-7a 0 0 1
chr1:155062270|155062523 hsa-let-7f 0 0 1
chr1:155062270|155062523 hsa-miR-760 1 0 0
chr1:155062270|155062523 hsa-miR-3132 1 0 0
chr1:155062270|155062523 hsa-miR-3196 1 0 0
chr1:155062270|155062523 hsa-miR-4451 1 0 0
chr1:155062270|155062523 hsa-miR-3135b 1 0 0
chr1:155062270|155062523 hsa-miR-4488 1 0 0
chr1:155062270|155062523 hsa-miR-4498 1 0 0
chr1:155062270|155062523 hsa-miR-3960 1 0 0
chr1:155062270|155062523 hsa-miR-4651 1 0 0
chr1:155062270|155062523 hsa-miR-4706 1 0 0
chr1:155062270|155062523 hsa-miR-4739 1 0 0
chr1:155062270|155062523 hsa-miR-6090 1 0 0
chr1:155062270|155062523 hsa-miR-7704 1 0 0
chr1:155062270|155062523 hsa-miR-12115 1 0 0
chr1:155062270|155062523 hsa-miR-6765-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6861-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6799-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6089 1 0 0
chr1:155062270|155062523 hsa-miR-6880-5p 1 0 0
chr1:155062270|155062523 hsa-miR-197-5p 1 0 0
chr1:155062270|155062523 hsa-miR-3180-3p 1 0 0
chr1:155062270|155062523 hsa-miR-6732-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6805-5p 1 0 0
chr1:155062270|155062523 hsa-miR-23a-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6798-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6786-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6835-5p 1 0 0
chr1:155062270|155062523 hsa-miR-5088-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1908-5p 1 0 0
chr1:155062270|155062523 hsa-miR-296-3p 1 0 0
chr1:155062270|155062523 hsa-miR-6789-5p 1 0 0
chr1:155062270|155062523 hsa-miR-5010-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1225-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1250-5p 1 0 0
chr1:155062270|155062523 hsa-miR-4727-3p 1 0 0
chr1:155062270|155062523 hsa-miR-6801-5p 1 0 0
chr1:155062270|155062523 hsa-miR-10400-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1207-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1233-5p 1 0 0
chr1:155062270|155062523 hsa-miR-4763-3p 1 0 0
chr1:155062270|155062523 hsa-miR-6778-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6787-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6816-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1343-5p 1 0 0
chr1:155062270|155062523 hsa-miR-5001-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6752-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6803-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6815-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6851-5p 1 0 0
chr1:155062270|155062523 hsa-miR-10401-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6722-3p 1 0 0
chr1:155062270|155062523 hsa-miR-3620-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1237-5p 1 0 0
chr1:155062270|155062523 hsa-miR-328-5p 1 0 0
chr1:155062270|155062523 hsa-miR-4649-5p 1 0 0
chr1:155062270|155062523 hsa-miR-4685-5p 1 0 0
chr1:155062270|155062523 hsa-miR-4726-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6729-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6735-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6738-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6777-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6846-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6848-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6889-5p 1 0 0
chr1:155062270|155062523 hsa-miR-4723-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6831-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6845-5p 1 0 0
chr1:155062270|155062523 hsa-miR-939-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6511b-5p 1 0 0
chr1:155062270|155062523 hsa-miR-10396a-3p 1 0 0
chr1:155062270|155062523 hsa-miR-10396b-3p 1 0 0
chr1:155062270|155062523 hsa-miR-3940-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6731-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6856-5p 1 0 0
chr1:155062270|155062523 hsa-miR-1914-3p 1 0 0
chr1:155062270|155062523 hsa-miR-6791-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6529-5p 1 0 0
chr1:155062270|155062523 hsa-miR-6718-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:155062270|155062523
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MASRNPDQRHRLRQCPRSTSDLSGGSA
Nucleotide Sequence TTGGCTTCCCGCAATCCAGACCAGCGCCACCGCCTCCGACAGTGTCCTCGCTCTACCTCTGACCTCTCCGGAGGTTCCGCT
CircID chr1:155062270|155062523
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MTLFSWLPAIQTSATASDSVLALPLTSPEVPL
Nucleotide Sequence CTGACTCTTTTTTCTTGGCTTCCCGCAATCCAGACCAGCGCCACCGCCTCCGACAGTGTCCTCGCTCTACCTCTGACCTCTCCGGAGGTTCCGCTG
CircID chr1:155062270|155062523
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MPADPQGRCPSGDLPGPGAGIPPLVVPSR
Nucleotide Sequence CTGCCTGCCGACCCCCAGGGCCGGTGCCCATCGGGTGACCTGCCCGGCCCAGGGGCTGGAATCCCGCCCCTAGTGGTACCCTCCAGGTAG
CircID chr1:155062270|155062523
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MREAKKKESEAPFPQVTRPAHPCPGLLLPGGYH
Nucleotide Sequence TTGCGGGAAGCCAAGAAAAAAGAGTCAGAGGCCCCTTTCCCCCAGGTCACTCGCCCCGCCCACCCATGCCCAGGGCTCCTCCTACCTGGAGGGTACCACTAG
CircID chr1:155062270|155062523
ORF Type ORF5
Protein Length 63
Nucleotide Length 189
Protein Sequence MDCGKPRKKSQRPLSPRSLAPPTHAQGSSYLEGTTRGGIPAPGPGRSPDGHRPWGSAGSGFLG
Nucleotide Sequence CTGGATTGCGGGAAGCCAAGAAAAAAGAGTCAGAGGCCCCTTTCCCCCAGGTCACTCGCCCCGCCCACCCATGCCCAGGGCTCCTCCTACCTGGAGGGTACCACTAGGGGCGGGATTCCAGCCCCTGGGCCGGGCAGGTCACCCGATGGGCACCGGCCCTGGGGGTCGGCAGGCAGTGGCTTCCTTGGG
CircID chr1:155062270|155062523
ORF Type ORF6
Protein Length 71
Nucleotide Length 213
Protein Sequence MSEAVALVWIAGSQEKRVRGPFPPGHSPRPPMPRAPPTWRVPLGAGFQPLGRAGHPMGTGPGGRQAVASLG
Nucleotide Sequence CTGTCGGAGGCGGTGGCGCTGGTCTGGATTGCGGGAAGCCAAGAAAAAAGAGTCAGAGGCCCCTTTCCCCCAGGTCACTCGCCCCGCCCACCCATGCCCAGGGCTCCTCCTACCTGGAGGGTACCACTAGGGGCGGGATTCCAGCCCCTGGGCCGGGCAGGTCACCCGATGGGCACCGGCCCTGGGGGTCGGCAGGCAGTGGCTTCCTTGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab