CircRNA Information

General Information
circRNA Basic Information
CircID chr1:155138005|155138277
Strand -
CircType exon
Host Gene ENSG00000169241.16;
Algorism CIRI2;
Sequence CCAATGTCTCTCCTACCCACTCACCATTGCTACCCTTCTCACCTCTGCCTCCTGGTGCCTCTATGGGTTTCGACTCAGAGATCCCTATATCATGGTAAGCACAACTGGGATGGGGTGACAGGGGTGCAAGATGGAAAACTGGCTCCTCTCCTCATAGCAGTTCTTGTGATTTCAGGTGTCCAACTTTCCAGGAATCGTCACCAGCTTTATCCGCTTCTGGCTTTTCTGGAAGTACCCCCAGGAGCAAGACAGGAACTACTGGCTCCTGCAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:155138005|155138277 hsa-miR-185-5p 0 0 1
chr1:155138005|155138277 hsa-miR-185-3p 0 0 1
chr1:155138005|155138277 hsa-miR-320a-5p 0 0 1
chr1:155138005|155138277 hsa-miR-320a-3p 0 0 1
chr1:155138005|155138277 hsa-miR-431-5p 0 0 1
chr1:155138005|155138277 hsa-miR-431-3p 0 0 1
chr1:155138005|155138277 hsa-miR-575 0 1 1
chr1:155138005|155138277 hsa-miR-587 0 0 1
chr1:155138005|155138277 hsa-miR-636 0 0 1
chr1:155138005|155138277 hsa-miR-637 0 1 1
chr1:155138005|155138277 hsa-miR-650 0 1 1
chr1:155138005|155138277 hsa-miR-665 1 1 1
chr1:155138005|155138277 hsa-miR-1286 0 0 1
chr1:155138005|155138277 hsa-miR-1253 0 0 1
chr1:155138005|155138277 hsa-miR-513b-5p 0 0 1
chr1:155138005|155138277 hsa-miR-513b-3p 0 0 1
chr1:155138005|155138277 hsa-miR-1827 0 0 1
chr1:155138005|155138277 hsa-miR-339-5p 0 1 1
chr1:155138005|155138277 hsa-miR-525-5p 0 0 1
chr1:155138005|155138277 hsa-miR-875-3p 0 0 1
chr1:155138005|155138277 hsa-miR-1244 0 0 1
chr1:155138005|155138277 hsa-miR-199b-3p 0 0 1
chr1:155138005|155138277 hsa-miR-199a-3p 0 0 1
chr1:155138005|155138277 hsa-miR-520a-5p 0 0 1
chr1:155138005|155138277 hsa-miR-320b 0 0 1
chr1:155138005|155138277 hsa-miR-320c 0 0 1
chr1:155138005|155138277 hsa-miR-320d 0 0 1
chr1:155138005|155138277 hsa-miR-138 0 0 1
chr1:155138005|155138277 hsa-miR-1300 0 0 1
chr1:155138005|155138277 hsa-miR-218 0 0 1
chr1:155138005|155138277 hsa-miR-571 0 1 0
chr1:155138005|155138277 hsa-miR-658 1 0 0
chr1:155138005|155138277 hsa-miR-3147 1 0 0
chr1:155138005|155138277 hsa-miR-3154 1 1 0
chr1:155138005|155138277 hsa-miR-1193 1 0 0
chr1:155138005|155138277 hsa-miR-4257 0 1 0
chr1:155138005|155138277 hsa-miR-3612 1 1 0
chr1:155138005|155138277 hsa-miR-3921 0 1 0
chr1:155138005|155138277 hsa-miR-3937 1 0 0
chr1:155138005|155138277 hsa-miR-4458 1 0 0
chr1:155138005|155138277 hsa-miR-4481 1 0 0
chr1:155138005|155138277 hsa-miR-4651 1 0 0
chr1:155138005|155138277 hsa-miR-4656 1 0 0
chr1:155138005|155138277 hsa-miR-4688 1 0 0
chr1:155138005|155138277 hsa-miR-4689 1 0 0
chr1:155138005|155138277 hsa-miR-5090 1 0 0
chr1:155138005|155138277 hsa-miR-5194 1 0 0
chr1:155138005|155138277 hsa-miR-6165 1 0 0
chr1:155138005|155138277 hsa-miR-7150 1 0 0
chr1:155138005|155138277 hsa-miR-7515 1 0 0
chr1:155138005|155138277 hsa-miR-7974 1 0 0
chr1:155138005|155138277 hsa-miR-135a-3p 0 1 0
chr1:155138005|155138277 hsa-miR-4433b-3p 1 0 0
chr1:155138005|155138277 hsa-miR-6879-3p 0 1 0
chr1:155138005|155138277 hsa-miR-4433a-3p 1 0 0
chr1:155138005|155138277 hsa-miR-6765-5p 1 0 0
chr1:155138005|155138277 hsa-miR-671-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6825-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6510-5p 1 0 0
chr1:155138005|155138277 hsa-miR-3622a-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6515-5p 1 0 0
chr1:155138005|155138277 hsa-miR-4695-5p 1 1 0
chr1:155138005|155138277 hsa-miR-505-5p 0 1 0
chr1:155138005|155138277 hsa-miR-593-5p 0 1 0
chr1:155138005|155138277 hsa-miR-145-3p 0 1 0
chr1:155138005|155138277 hsa-miR-197-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6768-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6748-5p 1 1 0
chr1:155138005|155138277 hsa-miR-6805-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6798-5p 1 0 0
chr1:155138005|155138277 hsa-miR-2467-3p 0 1 0
chr1:155138005|155138277 hsa-miR-6782-5p 1 0 0
chr1:155138005|155138277 hsa-miR-3150b-3p 0 1 0
chr1:155138005|155138277 hsa-miR-6858-3p 1 0 0
chr1:155138005|155138277 hsa-miR-1229-5p 1 0 0
chr1:155138005|155138277 hsa-miR-4640-5p 1 0 0
chr1:155138005|155138277 hsa-miR-885-3p 1 0 0
chr1:155138005|155138277 hsa-let-7b-5p 1 0 0
chr1:155138005|155138277 hsa-miR-92b-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6824-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6773-3p 0 1 0
chr1:155138005|155138277 hsa-miR-6802-3p 0 1 0
chr1:155138005|155138277 hsa-miR-500a-3p 1 0 0
chr1:155138005|155138277 hsa-miR-1207-5p 1 0 0
chr1:155138005|155138277 hsa-miR-4763-3p 1 0 0
chr1:155138005|155138277 hsa-miR-6769b-5p 1 1 0
chr1:155138005|155138277 hsa-miR-6778-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6812-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6865-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6893-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6743-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6752-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6754-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6756-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6769a-5p 1 0 0
chr1:155138005|155138277 hsa-miR-11181-3p 1 0 0
chr1:155138005|155138277 hsa-miR-1249-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6722-3p 1 0 0
chr1:155138005|155138277 hsa-miR-6763-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6797-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6808-5p 1 0 0
chr1:155138005|155138277 hsa-miR-5196-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6780b-5p 1 0 0
chr1:155138005|155138277 hsa-miR-1909-3p 1 0 0
chr1:155138005|155138277 hsa-miR-328-5p 1 0 0
chr1:155138005|155138277 hsa-miR-4632-5p 1 0 0
chr1:155138005|155138277 hsa-miR-4726-5p 1 0 0
chr1:155138005|155138277 hsa-miR-4745-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6735-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6738-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6846-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6848-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6858-5p 1 1 0
chr1:155138005|155138277 hsa-miR-6831-5p 1 1 0
chr1:155138005|155138277 hsa-miR-939-5p 1 0 0
chr1:155138005|155138277 hsa-miR-4758-5p 1 1 0
chr1:155138005|155138277 hsa-miR-1910-3p 0 1 0
chr1:155138005|155138277 hsa-miR-6511a-5p 1 1 0
chr1:155138005|155138277 hsa-miR-6758-5p 1 0 0
chr1:155138005|155138277 hsa-miR-1914-3p 1 0 0
chr1:155138005|155138277 hsa-miR-4646-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6891-5p 1 0 0
chr1:155138005|155138277 hsa-miR-6766-5p 1 0 0
chr1:155138005|155138277 hsa-miR-9851-3p 0 1 0
chr1:155138005|155138277 hsa-miR-483-3p 0 1 0
chr1:155138005|155138277 hsa-miR-4676-5p 0 1 0
chr1:155138005|155138277 hsa-miR-5699-3p 0 1 0
chr1:155138005|155138277 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:155138005|155138277
ORF Type ORF1
Protein Length 90
Nucleotide Length 270
Protein Sequence MSLLPTHHCYPSHLCLLVPLWVSTQRSLYHGKHNWDGVTGVQDGKLAPLLIAVLVISGVQLSRNRHQLYPLLAFLEVPPGARQELLAPAN
Nucleotide Sequence ATGTCTCTCCTACCCACTCACCATTGCTACCCTTCTCACCTCTGCCTCCTGGTGCCTCTATGGGTTTCGACTCAGAGATCCCTATATCATGGTAAGCACAACTGGGATGGGGTGACAGGGGTGCAAGATGGAAAACTGGCTCCTCTCCTCATAGCAGTTCTTGTGATTTCAGGTGTCCAACTTTCCAGGAATCGTCACCAGCTTTATCCGCTTCTGGCTTTTCTGGAAGTACCCCCAGGAGCAAGACAGGAACTACTGGCTCCTGCAAAC
CircID chr1:155138005|155138277
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MGWGDRGARWKTGSSPHSSSCDFRCPTFQESSPALSASGFSGSTPRSKTGTTGSCK
Nucleotide Sequence CTGGGATGGGGTGACAGGGGTGCAAGATGGAAAACTGGCTCCTCTCCTCATAGCAGTTCTTGTGATTTCAGGTGTCCAACTTTCCAGGAATCGTCACCAGCTTTATCCGCTTCTGGCTTTTCTGGAAGTACCCCCAGGAGCAAGACAGGAACTACTGGCTCCTGCAAA
CircID chr1:155138005|155138277
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MSCSWGYFQKSQKRIKLVTIPGKLDT
Nucleotide Sequence CTGTCTTGCTCCTGGGGGTACTTCCAGAAAAGCCAGAAGCGGATAAAGCTGGTGACGATTCCTGGAAAGTTGGACACCTGA
CircID chr1:155138005|155138277
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MESWTPEITRTAMRRGASFPSCTPVTPSQLCLP
Nucleotide Sequence CTGGAAAGTTGGACACCTGAAATCACAAGAACTGCTATGAGGAGAGGAGCCAGTTTTCCATCTTGCACCCCTGTCACCCCATCCCAGTTGTGCTTACCATGA
CircID chr1:155138005|155138277
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence LQEPVVPVLLLGVLPEKPEADKAGDDSWKVGHLKSQELL
Nucleotide Sequence TTGCAGGAGCCAGTAGTTCCTGTCTTGCTCCTGGGGGTACTTCCAGAAAAGCCAGAAGCGGATAAAGCTGGTGACGATTCCTGGAAAGTTGGACACCTGAAATCACAAGAACTGCTATGA
CircID chr1:155138005|155138277
ORF Type ORF6
Protein Length 40
Nucleotide Length 120
Protein Sequence MSPHPSCAYHDIGISESKPIEAPGGRGEKGSNGEWVGETL
Nucleotide Sequence CTGTCACCCCATCCCAGTTGTGCTTACCATGATATAGGGATCTCTGAGTCGAAACCCATAGAGGCACCAGGAGGCAGAGGTGAGAAGGGTAGCAATGGTGAGTGGGTAGGAGAGACATTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab