CircRNA Information

General Information
circRNA Basic Information
CircID chr1:155187509|155187765
Strand +
CircType exon
Host Gene ENSG00000185499.15;
Algorism CIRI2;
Sequence GGAAGCAGCCTCTCGATATAACCTGACGATCTCAGACGTCAGCGGTGAGGCTACTTCCCTGGCTGCAGCCCAGCACCATGCCGGGGCCCCTCTCCTTCCAGTGTCTGGGTCCCCGCTCTTTCCTTAGTGCTGGCAGCGGGAGGGGCGCCTCCTCTGGGAGACTGCCCTGACCACTGCTTTTCCTTTTAGTGAGTGATGTGCCATTTCCTTTCTCTGCCCAGTCTGGGGCTGGGGTGCCAGGCTGGGGCATCGCGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:155187509|155187765 hsa-miR-183-5p 0 0 1
chr1:155187509|155187765 hsa-miR-183-3p 0 0 1
chr1:155187509|155187765 hsa-miR-150-5p 0 0 1
chr1:155187509|155187765 hsa-miR-150-3p 0 0 1
chr1:155187509|155187765 hsa-miR-154-5p 0 0 1
chr1:155187509|155187765 hsa-miR-154-3p 0 0 1
chr1:155187509|155187765 hsa-miR-562 0 0 1
chr1:155187509|155187765 hsa-miR-612 0 1 1
chr1:155187509|155187765 hsa-miR-1202 0 0 1
chr1:155187509|155187765 hsa-miR-1276 0 0 1
chr1:155187509|155187765 hsa-miR-296-5p 0 0 1
chr1:155187509|155187765 hsa-miR-532-3p 0 0 1
chr1:155187509|155187765 hsa-miR-485-5p 0 0 1
chr1:155187509|155187765 hsa-miR-1184 0 1 1
chr1:155187509|155187765 hsa-miR-423-5p 0 0 1
chr1:155187509|155187765 hsa-miR-516a-3p 0 0 1
chr1:155187509|155187765 hsa-miR-1285 0 0 1
chr1:155187509|155187765 hsa-miR-499-3p 0 0 1
chr1:155187509|155187765 hsa-miR-608 1 0 0
chr1:155187509|155187765 hsa-miR-638 1 0 0
chr1:155187509|155187765 hsa-miR-762 1 0 0
chr1:155187509|155187765 hsa-miR-298 1 0 0
chr1:155187509|155187765 hsa-miR-1268a 1 0 0
chr1:155187509|155187765 hsa-miR-3132 1 0 0
chr1:155187509|155187765 hsa-miR-3153 0 1 0
chr1:155187509|155187765 hsa-miR-3154 1 0 0
chr1:155187509|155187765 hsa-miR-4304 0 1 0
chr1:155187509|155187765 hsa-miR-3714 1 0 0
chr1:155187509|155187765 hsa-miR-3916 1 1 0
chr1:155187509|155187765 hsa-miR-1268b 1 0 0
chr1:155187509|155187765 hsa-miR-378g 0 1 0
chr1:155187509|155187765 hsa-miR-4428 0 1 0
chr1:155187509|155187765 hsa-miR-4463 0 1 0
chr1:155187509|155187765 hsa-miR-4494 0 1 0
chr1:155187509|155187765 hsa-miR-4516 1 0 0
chr1:155187509|155187765 hsa-miR-4519 1 1 0
chr1:155187509|155187765 hsa-miR-4533 0 1 0
chr1:155187509|155187765 hsa-miR-1587 0 1 0
chr1:155187509|155187765 hsa-miR-4706 1 0 0
chr1:155187509|155187765 hsa-miR-4739 1 0 0
chr1:155187509|155187765 hsa-miR-4741 1 0 0
chr1:155187509|155187765 hsa-miR-5681a 1 0 0
chr1:155187509|155187765 hsa-miR-6083 0 1 0
chr1:155187509|155187765 hsa-miR-6124 0 1 0
chr1:155187509|155187765 hsa-miR-6860 0 1 0
chr1:155187509|155187765 hsa-miR-8075 1 1 0
chr1:155187509|155187765 hsa-miR-12120 1 0 0
chr1:155187509|155187765 hsa-miR-7106-5p 1 0 0
chr1:155187509|155187765 hsa-miR-6730-5p 1 0 0
chr1:155187509|155187765 hsa-miR-6762-3p 0 1 0
chr1:155187509|155187765 hsa-miR-197-5p 0 1 0
chr1:155187509|155187765 hsa-miR-6849-3p 0 1 0
chr1:155187509|155187765 hsa-miR-6716-5p 1 0 0
chr1:155187509|155187765 hsa-miR-6829-5p 0 1 0
chr1:155187509|155187765 hsa-miR-6770-5p 1 0 0
chr1:155187509|155187765 hsa-miR-6821-5p 1 0 0
chr1:155187509|155187765 hsa-miR-4713-5p 0 1 0
chr1:155187509|155187765 hsa-miR-4713-3p 1 1 0
chr1:155187509|155187765 hsa-miR-4667-3p 0 1 0
chr1:155187509|155187765 hsa-miR-149-3p 1 0 0
chr1:155187509|155187765 hsa-miR-7156-3p 0 1 0
chr1:155187509|155187765 hsa-miR-4707-5p 0 1 0
chr1:155187509|155187765 hsa-miR-4749-3p 0 1 0
chr1:155187509|155187765 hsa-miR-6789-3p 0 1 0
chr1:155187509|155187765 hsa-miR-4763-3p 1 0 0
chr1:155187509|155187765 hsa-miR-6722-3p 1 0 0
chr1:155187509|155187765 hsa-miR-6797-5p 1 0 0
chr1:155187509|155187765 hsa-miR-6879-5p 0 1 0
chr1:155187509|155187765 hsa-miR-3620-5p 0 1 0
chr1:155187509|155187765 hsa-miR-5189-5p 0 1 0
chr1:155187509|155187765 hsa-miR-4632-5p 0 1 0
chr1:155187509|155187765 hsa-miR-4685-5p 1 0 0
chr1:155187509|155187765 hsa-miR-4745-5p 1 1 0
chr1:155187509|155187765 hsa-miR-4749-5p 1 1 0
chr1:155187509|155187765 hsa-miR-6735-5p 0 1 0
chr1:155187509|155187765 hsa-miR-6777-5p 1 0 0
chr1:155187509|155187765 hsa-miR-3187-5p 0 1 0
chr1:155187509|155187765 hsa-miR-4436b-3p 0 1 0
chr1:155187509|155187765 hsa-miR-4758-5p 1 0 0
chr1:155187509|155187765 hsa-miR-6856-5p 1 1 0
chr1:155187509|155187765 hsa-miR-1285-3p 0 1 0
chr1:155187509|155187765 hsa-miR-1914-3p 0 1 0
chr1:155187509|155187765 hsa-miR-3679-5p 1 0 0
chr1:155187509|155187765 hsa-miR-6876-5p 1 1 0
chr1:155187509|155187765 hsa-miR-3184-5p 0 1 0
chr1:155187509|155187765 hsa-miR-6718-5p 0 1 0
chr1:155187509|155187765 hsa-miR-1234-3p 0 1 0
chr1:155187509|155187765 hsa-miR-4781-5p 0 1 0
chr1:155187509|155187765 hsa-miR-5197-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:155187509|155187765
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MTISDVSGEATSLAAAQHHAGAPLLPVSGSPLFP
Nucleotide Sequence CTGACGATCTCAGACGTCAGCGGTGAGGCTACTTCCCTGGCTGCAGCCCAGCACCATGCCGGGGCCCCTCTCCTTCCAGTGTCTGGGTCCCCGCTCTTTCCTTAG
CircID chr1:155187509|155187765
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MQPSTMPGPLSFQCLGPRSFLSAGSGRGASSGRLP
Nucleotide Sequence CTGCAGCCCAGCACCATGCCGGGGCCCCTCTCCTTCCAGTGTCTGGGTCCCCGCTCTTTCCTTAGTGCTGGCAGCGGGAGGGGCGCCTCCTCTGGGAGACTGCCCTGA
CircID chr1:155187509|155187765
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MLFLLVSDVPFPFSAQSGAGVPGWGIAL
Nucleotide Sequence CTGCTTTTCCTTTTAGTGAGTGATGTGCCATTTCCTTTCTCTGCCCAGTCTGGGGCTGGGGTGCCAGGCTGGGGCATCGCGCTG
CircID chr1:155187509|155187765
ORF Type ORF4
Protein Length 72
Nucleotide Length 219
Protein Sequence MPQPGTPAPDWAEKGNGTSLTKRKSSGQGSLPEEAPLPLPALRKERGPRHWKERGPGMVLGCSQGSSLTADV
Nucleotide Sequence ATGCCCCAGCCTGGCACCCCAGCCCCAGACTGGGCAGAGAAAGGAAATGGCACATCACTCACTAAAAGGAAAAGCAGTGGTCAGGGCAGTCTCCCAGAGGAGGCGCCCCTCCCGCTGCCAGCACTAAGGAAAGAGCGGGGACCCAGACACTGGAAGGAGAGGGGCCCCGGCATGGTGCTGGGCTGCAGCCAGGGAAGTAGCCTCACCGCTGACGTCTGA
CircID chr1:155187509|155187765
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MAPQPQTGQRKEMAHHSLKGKAVVRAVSQRRRPSRCQH
Nucleotide Sequence CTGGCACCCCAGCCCCAGACTGGGCAGAGAAAGGAAATGGCACATCACTCACTAAAAGGAAAAGCAGTGGTCAGGGCAGTCTCCCAGAGGAGGCGCCCCTCCCGCTGCCAGCACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab