CircRNA Information

General Information
circRNA Basic Information
CircID chr1:155709773|155726019
Strand +
CircType exon
Host Gene ENSG00000132676.15;
Algorism find_circ;CIRI2;CIRC
Sequence TGCAAGGATGATGCTGAAAGGAATAACAAGGCTTATCTCTAGGATCCATAAGTTGGACCCTGGGCGTTTTTTACACATGGGGACCCAGGCTCGCCAAAGCATTGCTGCTCACCTAGATAACCAGGTTCCAGTTGAGAGTCCGAGAGCTATTTCCCGCACCAATGAGAATGACCCGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTACAACATCTCCCCCCAGGATTTGGAGACTGTATTTCCCCATGGCCTTCCTCCTCGCTTTGTGATGCAGGTGAAGACATTCAGTGAAGCTTGCCTGATGGTAAGGAAACCAGCCCTAGAACTTCTGCATTACCTGAAAAACACCAGTTTTGCTTATCCAGCTATACGATATCTTCTGTATGGAGAGAAGGGAACAGGAAAAACCCTAAGTCTTTGCCATGTTATTCATTTCTGTGCAAAACAGGACTGGCTGATACTACATATTCCAGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:155709773|155726019 hsa-miR-138-5p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:155709773|155726019
ORF Type ORF1
Protein Length 157
Nucleotide Length 471
Protein Sequence MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPD
Nucleotide Sequence ATGATGCTGAAAGGAATAACAAGGCTTATCTCTAGGATCCATAAGTTGGACCCTGGGCGTTTTTTACACATGGGGACCCAGGCTCGCCAAAGCATTGCTGCTCACCTAGATAACCAGGTTCCAGTTGAGAGTCCGAGAGCTATTTCCCGCACCAATGAGAATGACCCGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTACAACATCTCCCCCCAGGATTTGGAGACTGTATTTCCCCATGGCCTTCCTCCTCGCTTTGTGATGCAGGTGAAGACATTCAGTGAAGCTTGCCTGATGGTAAGGAAACCAGCCCTAGAACTTCTGCATTACCTGAAAAACACCAGTTTTGCTTATCCAGCTATACGATATCTTCTGTATGGAGAGAAGGGAACAGGAAAAACCCTAAGTCTTTGCCATGTTATTCATTTCTGTGCAAAACAGGACTGGCTGATACTACATATTCCAGAT
CircID chr1:155709773|155726019
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MSSPASQSEEEGHGEIQSPNPGGRCCSADPRADPHAWPGHSHWCGK*
Nucleotide Sequence ATGTCTTCACCTGCATCACAAAGCGAGGAGGAAGGCCATGGGGAAATACAGTCTCCAAATCCTGGGGGGAGATGTTGTAGTGCTGACCCTCGTGCTGATCCCCATGCTTGGCCGGGTCATTCTCATTGGTGCGGGAAATAG
CircID chr1:155709773|155726019
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MGKYSLQILGGDVVVLTLVLIPMLGRVILIGAGNSSRTLNWNLVI*
Nucleotide Sequence ATGGGGAAATACAGTCTCCAAATCCTGGGGGGAGATGTTGTAGTGCTGACCCTCGTGCTGATCCCCATGCTTGGCCGGGTCATTCTCATTGGTGCGGGAAATAGCTCTCGGACTCTCAACTGGAACCTGGTTATCTAG
CircID chr1:155709773|155726019
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MRMTRPSMGISTRVSTTTSPPRIWRLYFPMAFLLAL*
Nucleotide Sequence ATGAGAATGACCCGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTACAACATCTCCCCCCAGGATTTGGAGACTGTATTTCCCCATGGCCTTCCTCCTCGCTTTGTGA
CircID chr1:155709773|155726019
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MLWRAWVPMCKKRPGSNLWILEISLVIPFSIILA
Nucleotide Sequence ATGCTTTGGCGAGCCTGGGTCCCCATGTGTAAAAAACGCCCAGGGTCCAACTTATGGATCCTAGAGATAAGCCTTGTTATTCCTTTCAGCATCATCCTTGCA
CircID chr1:155709773|155726019
ORF Type ORF6
Protein Length 60
Nucleotide Length 180
Protein Sequence LPDGKETSPRTSALPEKHQFCLSSYTISSVWREGNRKNPKSLPCYSFLCKTGLADTTYSR
Nucleotide Sequence TTGCCTGATGGTAAGGAAACCAGCCCTAGAACTTCTGCATTACCTGAAAAACACCAGTTTTGCTTATCCAGCTATACGATATCTTCTGTATGGAGAGAAGGGAACAGGAAAAACCCTAAGTCTTTGCCATGTTATTCATTTCTGTGCAAAACAGGACTGGCTGATACTACATATTCCAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:155709773|155726019 AGGF1 1 0 0
chr1:155709773|155726019 U2AF2 21 9 4
chr1:155709773|155726019 MOV10 1 0 1
chr1:155709773|155726019 ELAVL1 7 7 2
chr1:155709773|155726019 DHX9 0 0 2
chr1:155709773|155726019 SF3B4 3 0 0
chr1:155709773|155726019 FAM120A 0 0 3
chr1:155709773|155726019 CELF2 0 2 0
chr1:155709773|155726019 AARS 1 0 0
chr1:155709773|155726019 PRPF8 0 6 0
chr1:155709773|155726019 YTHDF1 1 0 0
chr1:155709773|155726019 UPF1 1 0 0
chr1:155709773|155726019 ZNF622 1 0 0
chr1:155709773|155726019 FMR1 1 0 4
chr1:155709773|155726019 RBM47 0 1 0
chr1:155709773|155726019 NUDT21 1 0 0
chr1:155709773|155726019 TIA1 0 2 0
chr1:155709773|155726019 FUS 1 1 0
chr1:155709773|155726019 GNL3 1 0 1
chr1:155709773|155726019 DGCR8 1 1 1
chr1:155709773|155726019 SRSF1 3 1 4
chr1:155709773|155726019 NOP58 0 1 2
chr1:155709773|155726019 U2AF1 0 0 1
chr1:155709773|155726019 ADAR 2 0 0
chr1:155709773|155726019 NOP56 2 0 1
chr1:155709773|155726019 DDX54 0 1 5
chr1:155709773|155726019 GRWD1 5 0 0
chr1:155709773|155726019 RBM10 0 1 0
chr1:155709773|155726019 FTO 0 1 0
chr1:155709773|155726019 SF3A3 1 0 0
chr1:155709773|155726019 MBNL1 0 0 1
chr1:155709773|155726019 PTBP1 3 1 0
chr1:155709773|155726019 HNRNPC 32 34 12
chr1:155709773|155726019 YWHAG 0 0 1
chr1:155709773|155726019 ATXN2 1 0 0
chr1:155709773|155726019 ZNF184 0 0 1
chr1:155709773|155726019 HNRNPA1 8 3 0
chr1:155709773|155726019 DDX3X 9 0 5
chr1:155709773|155726019 SMNDC1 1 0 0
chr1:155709773|155726019 MSI2 0 0 1
chr1:155709773|155726019 ACIN1 2 2 13
chr1:155709773|155726019 LIN28B 1 1 9
chr1:155709773|155726019 RANGAP1 1 0 1
chr1:155709773|155726019 FXR1 0 0 2
chr1:155709773|155726019 FXR2 0 0 1
chr1:155709773|155726019 SND1 0 0 5
chr1:155709773|155726019 FIP1L1 0 4 1
chr1:155709773|155726019 IGF2BP1 0 1 12
chr1:155709773|155726019 IGF2BP3 0 0 6
chr1:155709773|155726019 IGF2BP2 3 6 16
chr1:155709773|155726019 NPM1 0 0 2
chr1:155709773|155726019 HNRNPUL1 0 0 1
chr1:155709773|155726019 TARDBP 3 0 0
chr1:155709773|155726019 YTHDC1 1 1 0
chr1:155709773|155726019 BUD13 1 0 2
chr1:155709773|155726019 RBFOX2 0 1 0
chr1:155709773|155726019 CNBP 0 1 0
chr1:155709773|155726019 EIF4G2 1 0 0
chr1:155709773|155726019 SRRM4 1 0 0
chr1:155709773|155726019 DDX42 0 0 1
chr1:155709773|155726019 CSTF2T 0 2 3
chr1:155709773|155726019 BCCIP 0 0 1
chr1:155709773|155726019 CSTF2 7 15 2
chr1:155709773|155726019 TARBP2 0 1 0
chr1:155709773|155726019 METTL3 1 0 0
chr1:155709773|155726019 RBM22 0 1 0
chr1:155709773|155726019 TIAL1 0 1 0
chr1:155709773|155726019 DKC1 8 0 0
chr1:155709773|155726019 PPIG 1 0 0
chr1:155709773|155726019 TRA2A 2 0 0
chr1:155709773|155726019 FBL 2 1 4
chr1:155709773|155726019 AGO1 0 0 1
chr1:155709773|155726019 EWSR1 0 1 0
chr1:155709773|155726019 AGO2 0 0 16
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab