CircRNA Information

General Information
circRNA Basic Information
CircID chr1:155962973|155963160
Strand +
CircType exon
Host Gene ENSG00000116584.16;
Algorism CIRI2;
Sequence CATGTGAGGACACTGAAGATCATGACCCGCCTCTTCCGCACGGGGATGCTGGAAGAGCTACACTTGGAGCCAGGAGTGGTCCAGGGCCTGTTCCCCTGCGTGGACGAGCTCAGTGACATCCATACACGCTTCCTCAGCCAGCTATTAGAACGCCGACGCCAGGCCCTGTGCCCTGGCAGCACCCGGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:155962973|155963160 hsa-miR-149-5p 0 0 1
chr1:155962973|155963160 hsa-miR-149-3p 0 0 1
chr1:155962973|155963160 hsa-miR-433-5p 0 0 1
chr1:155962973|155963160 hsa-miR-433-3p 0 0 1
chr1:155962973|155963160 hsa-miR-668-5p 0 0 1
chr1:155962973|155963160 hsa-miR-668-3p 0 0 1
chr1:155962973|155963160 hsa-miR-1236-5p 0 0 1
chr1:155962973|155963160 hsa-miR-1236-3p 0 0 1
chr1:155962973|155963160 hsa-miR-1291 0 0 1
chr1:155962973|155963160 hsa-miR-1246 0 0 1
chr1:155962973|155963160 hsa-miR-324-5p 0 1 1
chr1:155962973|155963160 hsa-miR-576-5p 0 0 1
chr1:155962973|155963160 hsa-miR-338-3p 0 0 1
chr1:155962973|155963160 hsa-miR-483-3p 0 0 1
chr1:155962973|155963160 hsa-miR-220c 0 0 1
chr1:155962973|155963160 hsa-miR-1538 1 0 0
chr1:155962973|155963160 hsa-miR-2110 1 0 0
chr1:155962973|155963160 hsa-miR-2861 1 1 0
chr1:155962973|155963160 hsa-miR-3125 1 0 0
chr1:155962973|155963160 hsa-miR-4280 0 1 0
chr1:155962973|155963160 hsa-miR-3621 1 1 0
chr1:155962973|155963160 hsa-miR-3916 1 0 0
chr1:155962973|155963160 hsa-miR-4429 1 0 0
chr1:155962973|155963160 hsa-miR-4487 1 0 0
chr1:155962973|155963160 hsa-miR-4510 1 0 0
chr1:155962973|155963160 hsa-miR-4656 1 0 0
chr1:155962973|155963160 hsa-miR-5572 1 0 0
chr1:155962973|155963160 hsa-miR-5787 1 0 0
chr1:155962973|155963160 hsa-miR-6090 1 0 0
chr1:155962973|155963160 hsa-miR-6127 1 0 0
chr1:155962973|155963160 hsa-miR-6129 1 0 0
chr1:155962973|155963160 hsa-miR-8077 1 0 0
chr1:155962973|155963160 hsa-miR-6765-5p 1 0 0
chr1:155962973|155963160 hsa-miR-671-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6822-3p 1 1 0
chr1:155962973|155963160 hsa-miR-6880-5p 1 0 0
chr1:155962973|155963160 hsa-miR-4695-5p 1 0 0
chr1:155962973|155963160 hsa-miR-3064-5p 1 1 0
chr1:155962973|155963160 hsa-miR-6842-3p 1 0 0
chr1:155962973|155963160 hsa-miR-8069 1 0 0
chr1:155962973|155963160 hsa-miR-5589-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6776-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6783-5p 0 1 0
chr1:155962973|155963160 hsa-miR-1292-5p 0 1 0
chr1:155962973|155963160 hsa-miR-5006-5p 1 1 0
chr1:155962973|155963160 hsa-miR-6749-5p 1 1 0
chr1:155962973|155963160 hsa-miR-6501-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6513-3p 0 1 0
chr1:155962973|155963160 hsa-miR-10400-5p 1 0 0
chr1:155962973|155963160 hsa-miR-4763-3p 1 1 0
chr1:155962973|155963160 hsa-miR-6787-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6816-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6775-5p 1 0 0
chr1:155962973|155963160 hsa-miR-1343-5p 1 1 0
chr1:155962973|155963160 hsa-miR-6813-5p 1 0 0
chr1:155962973|155963160 hsa-miR-7107-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6722-3p 1 1 0
chr1:155962973|155963160 hsa-miR-6780b-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6836-5p 1 1 0
chr1:155962973|155963160 hsa-miR-1909-3p 0 1 0
chr1:155962973|155963160 hsa-miR-4685-5p 0 1 0
chr1:155962973|155963160 hsa-miR-4725-3p 1 0 0
chr1:155962973|155963160 hsa-miR-6858-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6883-5p 1 0 0
chr1:155962973|155963160 hsa-miR-939-5p 1 1 0
chr1:155962973|155963160 hsa-miR-10400-3p 1 0 0
chr1:155962973|155963160 hsa-miR-320a-3p 1 0 0
chr1:155962973|155963160 hsa-miR-320b 1 0 0
chr1:155962973|155963160 hsa-miR-6837-5p 0 1 0
chr1:155962973|155963160 hsa-miR-664a-5p 1 0 0
chr1:155962973|155963160 hsa-miR-6504-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:155962973|155963160
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MKIMTRLFRTGMLEELHLEPGVVQGLFPCVDELSDIHTRFLSQLLERRRQALCPGSTR
Nucleotide Sequence CTGAAGATCATGACCCGCCTCTTCCGCACGGGGATGCTGGAAGAGCTACACTTGGAGCCAGGAGTGGTCCAGGGCCTGTTCCCCTGCGTGGACGAGCTCAGTGACATCCATACACGCTTCCTCAGCCAGCTATTAGAACGCCGACGCCAGGCCCTGTGCCCTGGCAGCACCCGG
CircID chr1:155962973|155963160
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MPGHRAWRRRSNSWLRKRVWMSLSSSTQGNRPWTTPGSKCSSSSIPVRKRRVMIFSVLT
Nucleotide Sequence CTGCCAGGGCACAGGGCCTGGCGTCGGCGTTCTAATAGCTGGCTGAGGAAGCGTGTATGGATGTCACTGAGCTCGTCCACGCAGGGGAACAGGCCCTGGACCACTCCTGGCTCCAAGTGTAGCTCTTCCAGCATCCCCGTGCGGAAGAGGCGGGTCATGATCTTCAGTGTCCTCACA
CircID chr1:155962973|155963160
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MAEEACMDVTELVHAGEQALDHSWLQV
Nucleotide Sequence CTGGCTGAGGAAGCGTGTATGGATGTCACTGAGCTCGTCCACGCAGGGGAACAGGCCCTGGACCACTCCTGGCTCCAAGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab