CircRNA Information

General Information
circRNA Basic Information
CircID chr1:156009371|156009552
Strand +
CircType exon
Host Gene ENSG00000163479.12;
Algorism CIRI2;
Sequence GAAGAAGAACTGATTGGGGCTTCCACAGCCCTCCTCTCCCAAGAAATCCAGGCTCCTCTCCCAAGAAATCCAGGTGCTTTCCAGACTCCAAAGGGTATCTTAAATGCAATCTCTTCTCTCTTAGCCCTTGGCCACTTTCTCCTGGATCCTGCCCTGCTCTCAGCCATAGTGAAGGACCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:156009371|156009552 hsa-miR-33a-5p 0 0 1
chr1:156009371|156009552 hsa-miR-33a-3p 0 0 1
chr1:156009371|156009552 hsa-miR-205-5p 0 0 1
chr1:156009371|156009552 hsa-miR-205-3p 0 0 1
chr1:156009371|156009552 hsa-miR-135b-5p 0 0 1
chr1:156009371|156009552 hsa-miR-135b-3p 0 0 1
chr1:156009371|156009552 hsa-miR-578 0 0 1
chr1:156009371|156009552 hsa-miR-619-5p 0 0 1
chr1:156009371|156009552 hsa-miR-619-3p 0 0 1
chr1:156009371|156009552 hsa-miR-33b-5p 0 0 1
chr1:156009371|156009552 hsa-miR-33b-3p 0 0 1
chr1:156009371|156009552 hsa-miR-635 0 0 1
chr1:156009371|156009552 hsa-miR-665 0 1 1
chr1:156009371|156009552 hsa-miR-1290 0 0 1
chr1:156009371|156009552 hsa-miR-1299 0 0 1
chr1:156009371|156009552 hsa-miR-1253 0 0 1
chr1:156009371|156009552 hsa-miR-671-5p 1 0 1
chr1:156009371|156009552 hsa-miR-1289 0 0 1
chr1:156009371|156009552 hsa-miR-875-3p 0 1 1
chr1:156009371|156009552 hsa-miR-876-5p 0 0 1
chr1:156009371|156009552 hsa-miR-135a 0 0 1
chr1:156009371|156009552 hsa-miR-1254 0 0 1
chr1:156009371|156009552 hsa-miR-768-5p 0 0 1
chr1:156009371|156009552 hsa-miR-762 1 0 0
chr1:156009371|156009552 hsa-miR-1268a 1 0 0
chr1:156009371|156009552 hsa-miR-1275 1 1 0
chr1:156009371|156009552 hsa-miR-2278 0 1 0
chr1:156009371|156009552 hsa-miR-2861 1 0 0
chr1:156009371|156009552 hsa-miR-3125 1 0 0
chr1:156009371|156009552 hsa-miR-3141 1 0 0
chr1:156009371|156009552 hsa-miR-3147 1 0 0
chr1:156009371|156009552 hsa-miR-4298 1 0 0
chr1:156009371|156009552 hsa-miR-4309 0 1 0
chr1:156009371|156009552 hsa-miR-1268b 1 0 0
chr1:156009371|156009552 hsa-miR-4526 1 0 0
chr1:156009371|156009552 hsa-miR-4538 1 0 0
chr1:156009371|156009552 hsa-miR-3978 0 1 0
chr1:156009371|156009552 hsa-miR-4656 1 1 0
chr1:156009371|156009552 hsa-miR-4734 1 0 0
chr1:156009371|156009552 hsa-miR-4739 1 0 0
chr1:156009371|156009552 hsa-miR-4741 0 1 0
chr1:156009371|156009552 hsa-miR-5090 1 0 0
chr1:156009371|156009552 hsa-miR-5698 1 0 0
chr1:156009371|156009552 hsa-miR-5739 1 0 0
chr1:156009371|156009552 hsa-miR-5787 1 0 0
chr1:156009371|156009552 hsa-miR-6079 0 1 0
chr1:156009371|156009552 hsa-miR-6081 1 0 0
chr1:156009371|156009552 hsa-miR-6085 1 0 0
chr1:156009371|156009552 hsa-miR-378j 1 0 0
chr1:156009371|156009552 hsa-miR-6133 1 0 0
chr1:156009371|156009552 hsa-miR-7974 0 1 0
chr1:156009371|156009552 hsa-miR-8075 1 0 0
chr1:156009371|156009552 hsa-miR-8085 1 1 0
chr1:156009371|156009552 hsa-miR-12115 1 0 0
chr1:156009371|156009552 hsa-miR-12119 1 0 0
chr1:156009371|156009552 hsa-miR-6734-5p 1 0 0
chr1:156009371|156009552 hsa-miR-7106-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6825-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6799-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6510-5p 1 1 0
chr1:156009371|156009552 hsa-miR-6515-5p 0 1 0
chr1:156009371|156009552 hsa-miR-6880-5p 1 0 0
chr1:156009371|156009552 hsa-miR-7847-3p 1 0 0
chr1:156009371|156009552 hsa-miR-6746-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4722-5p 1 0 0
chr1:156009371|156009552 hsa-miR-3677-5p 0 1 0
chr1:156009371|156009552 hsa-miR-3928-3p 1 0 0
chr1:156009371|156009552 hsa-miR-6727-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6721-5p 1 0 0
chr1:156009371|156009552 hsa-miR-197-5p 1 0 0
chr1:156009371|156009552 hsa-miR-8069 1 0 0
chr1:156009371|156009552 hsa-miR-3180-3p 1 0 0
chr1:156009371|156009552 hsa-miR-6827-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6760-5p 1 1 0
chr1:156009371|156009552 hsa-miR-5088-5p 1 0 0
chr1:156009371|156009552 hsa-miR-7109-5p 1 0 0
chr1:156009371|156009552 hsa-miR-1226-5p 1 1 0
chr1:156009371|156009552 hsa-miR-6740-5p 1 0 0
chr1:156009371|156009552 hsa-miR-1229-5p 1 1 0
chr1:156009371|156009552 hsa-miR-4640-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6753-5p 1 0 0
chr1:156009371|156009552 hsa-miR-30c-2-3p 1 1 0
chr1:156009371|156009552 hsa-miR-5004-3p 0 1 0
chr1:156009371|156009552 hsa-miR-1228-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4690-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4732-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6749-5p 1 0 0
chr1:156009371|156009552 hsa-miR-149-3p 1 1 0
chr1:156009371|156009552 hsa-miR-6824-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6781-5p 1 0 0
chr1:156009371|156009552 hsa-miR-3065-3p 0 1 0
chr1:156009371|156009552 hsa-miR-7112-5p 1 0 0
chr1:156009371|156009552 hsa-miR-664b-5p 1 1 0
chr1:156009371|156009552 hsa-miR-887-5p 0 1 0
chr1:156009371|156009552 hsa-miR-423-5p 1 0 0
chr1:156009371|156009552 hsa-miR-7846-3p 1 0 0
chr1:156009371|156009552 hsa-miR-4661-3p 0 1 0
chr1:156009371|156009552 hsa-miR-744-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6814-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6837-3p 0 1 0
chr1:156009371|156009552 hsa-miR-5004-5p 1 0 0
chr1:156009371|156009552 hsa-miR-1207-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4763-3p 1 0 0
chr1:156009371|156009552 hsa-miR-6865-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6870-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6775-5p 1 0 0
chr1:156009371|156009552 hsa-miR-1343-5p 1 0 0
chr1:156009371|156009552 hsa-miR-3180 1 0 0
chr1:156009371|156009552 hsa-miR-6743-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6756-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6803-5p 1 0 0
chr1:156009371|156009552 hsa-miR-7107-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6722-3p 1 0 0
chr1:156009371|156009552 hsa-miR-6751-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6774-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6779-5p 1 1 0
chr1:156009371|156009552 hsa-miR-6780a-5p 1 1 0
chr1:156009371|156009552 hsa-miR-6788-5p 1 1 0
chr1:156009371|156009552 hsa-miR-6797-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6875-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6879-5p 1 1 0
chr1:156009371|156009552 hsa-miR-7111-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4728-5p 1 0 0
chr1:156009371|156009552 hsa-miR-5196-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6780b-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6836-5p 1 0 0
chr1:156009371|156009552 hsa-miR-10396a-5p 1 0 0
chr1:156009371|156009552 hsa-miR-1237-5p 1 0 0
chr1:156009371|156009552 hsa-miR-328-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4632-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4649-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4685-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4745-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6729-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6735-5p 1 1 0
chr1:156009371|156009552 hsa-miR-6846-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6848-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6883-5p 1 1 0
chr1:156009371|156009552 hsa-miR-4436b-3p 1 1 0
chr1:156009371|156009552 hsa-miR-939-5p 1 0 0
chr1:156009371|156009552 hsa-miR-3198 1 1 0
chr1:156009371|156009552 hsa-miR-30c-1-3p 1 1 0
chr1:156009371|156009552 hsa-miR-6731-5p 1 1 0
chr1:156009371|156009552 hsa-miR-6758-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6856-5p 1 0 0
chr1:156009371|156009552 hsa-miR-7843-5p 0 1 0
chr1:156009371|156009552 hsa-miR-6736-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4646-5p 1 0 0
chr1:156009371|156009552 hsa-miR-4747-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6766-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6785-5p 1 0 0
chr1:156009371|156009552 hsa-miR-6718-5p 1 1 0
chr1:156009371|156009552 hsa-miR-498-3p 0 1 0
chr1:156009371|156009552 hsa-miR-508-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:156009371|156009552
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MIGASTALLSQEIQAPLPRNPGAFQTPKGILNAISSLLALGHFLLDPALLSAIVKDQ
Nucleotide Sequence CTGATTGGGGCTTCCACAGCCCTCCTCTCCCAAGAAATCCAGGCTCCTCTCCCAAGAAATCCAGGTGCTTTCCAGACTCCAAAGGGTATCTTAAATGCAATCTCTTCTCTCTTAGCCCTTGGCCACTTTCTCCTGGATCCTGCCCTGCTCTCAGCCATAGTGAAGGACCAG
CircID chr1:156009371|156009552
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MGLPQPSSPKKSRLLSQEIQVLSRLQRVS
Nucleotide Sequence TTGGGGCTTCCACAGCCCTCCTCTCCCAAGAAATCCAGGCTCCTCTCCCAAGAAATCCAGGTGCTTTCCAGACTCCAAAGGGTATCTTAA
CircID chr1:156009371|156009552
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MAESRAGSRRKWPRAKREEIAFKIPFGVWKAPGFLGRGAWISWERRAVEAPISSS
Nucleotide Sequence ATGGCTGAGAGCAGGGCAGGATCCAGGAGAAAGTGGCCAAGGGCTAAGAGAGAAGAGATTGCATTTAAGATACCCTTTGGAGTCTGGAAAGCACCTGGATTTCTTGGGAGAGGAGCCTGGATTTCTTGGGAGAGGAGGGCTGTGGAAGCCCCAATCAGTTCTTCT
CircID chr1:156009371|156009552
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MRAGQDPGESGQGLREKRLHLRYPLESGKHLDFLGEEPGFLGRGGLWKPQSVLL
Nucleotide Sequence CTGAGAGCAGGGCAGGATCCAGGAGAAAGTGGCCAAGGGCTAAGAGAGAAGAGATTGCATTTAAGATACCCTTTGGAGTCTGGAAAGCACCTGGATTTCTTGGGAGAGGAGCCTGGATTTCTTGGGAGAGGAGGGCTGTGGAAGCCCCAATCAGTTCTTCTT
CircID chr1:156009371|156009552
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MESTWISWERSLDFLGEEGCGSPNQFFF
Nucleotide Sequence CTGGAAAGCACCTGGATTTCTTGGGAGAGGAGCCTGGATTTCTTGGGAGAGGAGGGCTGTGGAAGCCCCAATCAGTTCTTCTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab