CircRNA Information

General Information
circRNA Basic Information
CircID chr1:156134486|156134885
Strand -
CircType exon
Host Gene ENSG00000160789.18;
Algorism CIRI2;
Sequence CATGAAGGAGGAACTGGACTTCCAGAAGAACATCTACAGTGAGGTGGGGACTGTGCTTTGCAAGCCAGAGGGCTGGGGCTGGGTGATGACAGACTTGGGCTGGGCTAGGGGGGACCAGCTGTGTGCAGAGCTCGCCTTCCTGAGTCCCTTGCCCTAGTGGACAGGGAGTTGGGGGTGGCCAGCACTCAGCTCCCAGGTTAAAGTGGGGCTGGTAGTGGCTCATGGAGTAGGGCTGGGCAGGGAGCCCCGCCCCTGGGTCTTGGCCTCCCAGGAACTAATTCTGATTTTGGTTTCTGTGTCCTTCCTCCAACCCTTCCAGGAGCTGCGTGAGACCAAGCGCCGTCATGAGACCCGACTGGTGGAGATTGACAATGGGAAGCAGCGTGAGTTTGAGAGCCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:156134486|156134885 hsa-miR-205-5p 0 0 1
chr1:156134486|156134885 hsa-miR-205-3p 0 0 1
chr1:156134486|156134885 hsa-miR-149-5p 0 0 1
chr1:156134486|156134885 hsa-miR-149-3p 0 0 1
chr1:156134486|156134885 hsa-miR-527 0 0 1
chr1:156134486|156134885 hsa-miR-510-5p 0 0 1
chr1:156134486|156134885 hsa-miR-510-3p 0 0 1
chr1:156134486|156134885 hsa-miR-588 0 0 1
chr1:156134486|156134885 hsa-miR-634 0 0 1
chr1:156134486|156134885 hsa-miR-649 0 0 1
chr1:156134486|156134885 hsa-miR-765 0 0 1
chr1:156134486|156134885 hsa-miR-744-5p 0 0 1
chr1:156134486|156134885 hsa-miR-744-3p 0 0 1
chr1:156134486|156134885 hsa-miR-873-5p 0 0 1
chr1:156134486|156134885 hsa-miR-873-3p 0 0 1
chr1:156134486|156134885 hsa-miR-920 0 0 1
chr1:156134486|156134885 hsa-miR-1183 0 1 1
chr1:156134486|156134885 hsa-miR-1208 0 0 1
chr1:156134486|156134885 hsa-miR-1299 0 0 1
chr1:156134486|156134885 hsa-miR-1197 0 0 1
chr1:156134486|156134885 hsa-miR-145-5p 0 0 1
chr1:156134486|156134885 hsa-miR-512-3p 0 0 1
chr1:156134486|156134885 hsa-miR-296-3p 0 1 1
chr1:156134486|156134885 hsa-miR-339-5p 1 1 1
chr1:156134486|156134885 hsa-miR-490-3p 0 1 1
chr1:156134486|156134885 hsa-miR-330-3p 0 1 1
chr1:156134486|156134885 hsa-miR-508-5p 0 0 1
chr1:156134486|156134885 hsa-miR-1224-3p 1 0 1
chr1:156134486|156134885 hsa-miR-1207-3p 0 1 1
chr1:156134486|156134885 hsa-miR-576-3p 0 0 1
chr1:156134486|156134885 hsa-miR-875-3p 0 0 1
chr1:156134486|156134885 hsa-miR-518a-5p 0 0 1
chr1:156134486|156134885 hsa-miR-516a-3p 0 0 1
chr1:156134486|156134885 hsa-miR-371-5p 0 0 1
chr1:156134486|156134885 hsa-miR-1274a 0 0 1
chr1:156134486|156134885 hsa-miR-1274b 0 0 1
chr1:156134486|156134885 hsa-miR-516b 0 0 1
chr1:156134486|156134885 hsa-miR-768-5p 0 0 1
chr1:156134486|156134885 hsa-miR-663 0 0 1
chr1:156134486|156134885 hsa-miR-133b 0 1 0
chr1:156134486|156134885 hsa-miR-663a 0 1 0
chr1:156134486|156134885 hsa-miR-1913 1 0 0
chr1:156134486|156134885 hsa-miR-4300 0 1 0
chr1:156134486|156134885 hsa-miR-4323 0 1 0
chr1:156134486|156134885 hsa-miR-4292 1 0 0
chr1:156134486|156134885 hsa-miR-4462 1 0 0
chr1:156134486|156134885 hsa-miR-4476 0 1 0
chr1:156134486|156134885 hsa-miR-4479 1 0 0
chr1:156134486|156134885 hsa-miR-3972 1 0 0
chr1:156134486|156134885 hsa-miR-4660 0 1 0
chr1:156134486|156134885 hsa-miR-5685 0 1 0
chr1:156134486|156134885 hsa-miR-6084 1 0 0
chr1:156134486|156134885 hsa-miR-8063 0 1 0
chr1:156134486|156134885 hsa-miR-8080 0 1 0
chr1:156134486|156134885 hsa-miR-6749-3p 1 1 0
chr1:156134486|156134885 hsa-miR-3194-3p 0 1 0
chr1:156134486|156134885 hsa-miR-6879-3p 1 1 0
chr1:156134486|156134885 hsa-miR-4726-3p 1 0 0
chr1:156134486|156134885 hsa-miR-215-3p 0 1 0
chr1:156134486|156134885 hsa-miR-6720-5p 1 0 0
chr1:156134486|156134885 hsa-miR-766-3p 1 0 0
chr1:156134486|156134885 hsa-miR-150-5p 0 1 0
chr1:156134486|156134885 hsa-miR-219a-1-3p 0 1 0
chr1:156134486|156134885 hsa-miR-7851-3p 0 1 0
chr1:156134486|156134885 hsa-miR-6089 1 1 0
chr1:156134486|156134885 hsa-miR-3192-5p 0 1 0
chr1:156134486|156134885 hsa-miR-1301-3p 0 1 0
chr1:156134486|156134885 hsa-miR-6762-3p 1 1 0
chr1:156134486|156134885 hsa-miR-4677-5p 0 1 0
chr1:156134486|156134885 hsa-miR-3189-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6849-3p 1 0 0
chr1:156134486|156134885 hsa-miR-3180-3p 1 1 0
chr1:156134486|156134885 hsa-miR-3126-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6765-3p 1 0 0
chr1:156134486|156134885 hsa-miR-3194-5p 1 0 0
chr1:156134486|156134885 hsa-miR-30b-3p 0 1 0
chr1:156134486|156134885 hsa-miR-3691-3p 1 1 0
chr1:156134486|156134885 hsa-miR-6858-3p 1 0 0
chr1:156134486|156134885 hsa-miR-1343-3p 0 1 0
chr1:156134486|156134885 hsa-miR-5088-5p 1 0 0
chr1:156134486|156134885 hsa-miR-7109-5p 0 1 0
chr1:156134486|156134885 hsa-miR-4763-5p 1 1 0
chr1:156134486|156134885 hsa-miR-7113-3p 1 1 0
chr1:156134486|156134885 hsa-miR-3160-3p 0 1 0
chr1:156134486|156134885 hsa-miR-1304-3p 0 1 0
chr1:156134486|156134885 hsa-miR-2115-3p 0 1 0
chr1:156134486|156134885 hsa-miR-3190-5p 0 1 0
chr1:156134486|156134885 hsa-miR-211-5p 1 0 0
chr1:156134486|156134885 hsa-miR-4798-3p 0 1 0
chr1:156134486|156134885 hsa-miR-7106-3p 0 1 0
chr1:156134486|156134885 hsa-miR-4758-3p 1 1 0
chr1:156134486|156134885 hsa-miR-6793-3p 0 1 0
chr1:156134486|156134885 hsa-miR-2276-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6741-3p 1 1 0
chr1:156134486|156134885 hsa-miR-6752-3p 1 1 0
chr1:156134486|156134885 hsa-miR-3940-3p 1 0 0
chr1:156134486|156134885 hsa-miR-4283 0 1 0
chr1:156134486|156134885 hsa-miR-449b-3p 1 0 0
chr1:156134486|156134885 hsa-miR-3157-3p 1 0 0
chr1:156134486|156134885 hsa-miR-506-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6750-3p 0 1 0
chr1:156134486|156134885 hsa-miR-6890-3p 1 0 0
chr1:156134486|156134885 hsa-miR-3162-3p 1 0 0
chr1:156134486|156134885 hsa-miR-5587-5p 1 0 0
chr1:156134486|156134885 hsa-miR-550b-3p 0 1 0
chr1:156134486|156134885 hsa-miR-133a-3p 0 1 0
chr1:156134486|156134885 hsa-miR-10400-5p 1 0 0
chr1:156134486|156134885 hsa-miR-1233-5p 1 1 0
chr1:156134486|156134885 hsa-miR-1273h-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6778-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6816-5p 1 1 0
chr1:156134486|156134885 hsa-miR-3180 0 1 0
chr1:156134486|156134885 hsa-miR-6726-5p 0 1 0
chr1:156134486|156134885 hsa-miR-1249-5p 1 1 0
chr1:156134486|156134885 hsa-miR-6780a-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6797-5p 1 1 0
chr1:156134486|156134885 hsa-miR-6875-5p 0 1 0
chr1:156134486|156134885 hsa-miR-642b-3p 1 0 0
chr1:156134486|156134885 hsa-miR-10396a-5p 0 1 0
chr1:156134486|156134885 hsa-miR-10396b-5p 0 1 0
chr1:156134486|156134885 hsa-miR-328-5p 1 0 0
chr1:156134486|156134885 hsa-miR-4745-5p 1 0 0
chr1:156134486|156134885 hsa-miR-6735-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6799-3p 1 0 0
chr1:156134486|156134885 hsa-miR-6876-5p 0 1 0
chr1:156134486|156134885 hsa-miR-5591-5p 0 1 0
chr1:156134486|156134885 hsa-miR-10398-5p 0 1 0
chr1:156134486|156134885 hsa-miR-6862-3p 1 1 0
chr1:156134486|156134885 hsa-miR-6805-3p 1 0 0
chr1:156134486|156134885 hsa-miR-10392-3p 1 0 0
chr1:156134486|156134885 hsa-miR-4701-5p 1 1 0
chr1:156134486|156134885 hsa-miR-6764-5p 0 1 0
chr1:156134486|156134885 hsa-miR-4690-3p 1 1 0
chr1:156134486|156134885 hsa-miR-6835-3p 0 1 0
chr1:156134486|156134885 hsa-miR-302d-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:156134486|156134885
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MGLGLPGTNSDFGFCVLPPTLPGAA
Nucleotide Sequence CTGGGTCTTGGCCTCCCAGGAACTAATTCTGATTTTGGTTTCTGTGTCCTTCCTCCAACCCTTCCAGGAGCTGCGTGA
CircID chr1:156134486|156134885
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MKEELDFQKNIYSEVGTVLCKPEGWGWVMTDLGWARGDQLCAELAFLSPLP
Nucleotide Sequence ATGAAGGAGGAACTGGACTTCCAGAAGAACATCTACAGTGAGGTGGGGACTGTGCTTTGCAAGCCAGAGGGCTGGGGCTGGGTGATGACAGACTTGGGCTGGGCTAGGGGGGACCAGCTGTGTGCAGAGCTCGCCTTCCTGAGTCCCTTGCCCTAG
CircID chr1:156134486|156134885
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence MVVAHGVGLGREPRPWVLASQELILILVSVSFLQPFQELRETKRRHETRLVEIDNGKQREFESR
Nucleotide Sequence CTGGTAGTGGCTCATGGAGTAGGGCTGGGCAGGGAGCCCCGCCCCTGGGTCTTGGCCTCCCAGGAACTAATTCTGATTTTGGTTTCTGTGTCCTTCCTCCAACCCTTCCAGGAGCTGCGTGAGACCAAGCGCCGTCATGAGACCCGACTGGTGGAGATTGACAATGGGAAGCAGCGTGAGTTTGAGAGCCGG
CircID chr1:156134486|156134885
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MCPSSNPSRSCVRPSAVMRPDWWRLTMGSSVSLRA
Nucleotide Sequence CTGTGTCCTTCCTCCAACCCTTCCAGGAGCTGCGTGAGACCAAGCGCCGTCATGAGACCCGACTGGTGGAGATTGACAATGGGAAGCAGCGTGAGTTTGAGAGCC
CircID chr1:156134486|156134885
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MLPIVNLHQSGLMTALGLTQLLEGLEEGHRNQNQN
Nucleotide Sequence CTGCTTCCCATTGTCAATCTCCACCAGTCGGGTCTCATGACGGCGCTTGGTCTCACGCAGCTCCTGGAAGGGTTGGAGGAAGGACACAGAAACCAAAATCAGAATTAG
CircID chr1:156134486|156134885
ORF Type ORF6
Protein Length 90
Nucleotide Length 270
Protein Sequence MGGQDPGAGLPAQPYSMSHYQPHFNLGAECWPPPTPCPLGQGTQEGELCTQLVPPSPAQVCHHPAPALWLAKHSPHLTVDVLLEVQFLLH
Nucleotide Sequence CTGGGAGGCCAAGACCCAGGGGCGGGGCTCCCTGCCCAGCCCTACTCCATGAGCCACTACCAGCCCCACTTTAACCTGGGAGCTGAGTGCTGGCCACCCCCAACTCCCTGTCCACTAGGGCAAGGGACTCAGGAAGGCGAGCTCTGCACACAGCTGGTCCCCCCTAGCCCAGCCCAAGTCTGTCATCACCCAGCCCCAGCCCTCTGGCTTGCAAAGCACAGTCCCCACCTCACTGTAGATGTTCTTCTGGAAGTCCAGTTCCTCCTTCAT
CircID chr1:156134486|156134885
ORF Type ORF7
Protein Length 38
Nucleotide Length 117
Protein Sequence MVSRSSWKGWRKDTETKIRISSWEAKTQGRGSLPSPTP
Nucleotide Sequence TTGGTCTCACGCAGCTCCTGGAAGGGTTGGAGGAAGGACACAGAAACCAAAATCAGAATTAGTTCCTGGGAGGCCAAGACCCAGGGGCGGGGCTCCCTGCCCAGCCCTACTCCATGA
CircID chr1:156134486|156134885
ORF Type ORF8
Protein Length 25
Nucleotide Length 78
Protein Sequence MATPNSLSTRARDSGRRALHTAGPP
Nucleotide Sequence CTGGCCACCCCCAACTCCCTGTCCACTAGGGCAAGGGACTCAGGAAGGCGAGCTCTGCACACAGCTGGTCCCCCCTAG
CircID chr1:156134486|156134885
ORF Type ORF9
Protein Length 30
Nucleotide Length 90
Protein Sequence MSSPSPSPLACKAQSPPHCRCSSGSPVPPS
Nucleotide Sequence CTGTCATCACCCAGCCCCAGCCCTCTGGCTTGCAAAGCACAGTCCCCACCTCACTGTAGATGTTCTTCTGGAAGTCCAGTTCCTCCTTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab