CircRNA Information

General Information
circRNA Basic Information
CircID chr1:156671223|156671421
Strand +
CircType exon
Host Gene ENSG00000132688.10;
Algorism CIRI2;
Sequence CTGGGAAAGGGAGAGTACCAAGAGTCACTGAGGTCTCTGGAGGAGGAGGGACAGGAGCTGCCGCAGTCTGCAGATGTGCAGAGGTGGGAAGATACGGTGGAGAAGGACCAAGAACTGGCTCAGGAAAGCCCTCCTGGGATGGCTGGAGTGGAAAATGAGGATGAGGCAGAGCTGAATCTGAGGGAGCAGGATGGCTTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:156671223|156671421 hsa-miR-204-5p 0 0 1
chr1:156671223|156671421 hsa-miR-204-3p 0 0 1
chr1:156671223|156671421 hsa-miR-211-5p 0 0 1
chr1:156671223|156671421 hsa-miR-211-3p 0 0 1
chr1:156671223|156671421 hsa-miR-370-5p 0 0 1
chr1:156671223|156671421 hsa-miR-370-3p 0 0 1
chr1:156671223|156671421 hsa-miR-133b 0 1 1
chr1:156671223|156671421 hsa-miR-575 0 0 1
chr1:156671223|156671421 hsa-miR-766-5p 0 0 1
chr1:156671223|156671421 hsa-miR-766-3p 0 0 1
chr1:156671223|156671421 hsa-miR-665 0 0 1
chr1:156671223|156671421 hsa-miR-1237-5p 0 0 1
chr1:156671223|156671421 hsa-miR-1237-3p 0 0 1
chr1:156671223|156671421 hsa-miR-1200 1 1 1
chr1:156671223|156671421 hsa-miR-1205 0 0 1
chr1:156671223|156671421 hsa-miR-1248 0 0 1
chr1:156671223|156671421 hsa-miR-1263 0 0 1
chr1:156671223|156671421 hsa-miR-769-5p 0 1 1
chr1:156671223|156671421 hsa-miR-1184 0 0 1
chr1:156671223|156671421 hsa-miR-525-5p 0 0 1
chr1:156671223|156671421 hsa-miR-508-5p 0 1 1
chr1:156671223|156671421 hsa-miR-1224-3p 1 1 1
chr1:156671223|156671421 hsa-miR-188-3p 0 0 1
chr1:156671223|156671421 hsa-miR-520a-5p 0 0 1
chr1:156671223|156671421 hsa-miR-515-5p 0 0 1
chr1:156671223|156671421 hsa-miR-1260 0 0 1
chr1:156671223|156671421 hsa-miR-1280 0 0 1
chr1:156671223|156671421 hsa-miR-133a 0 0 1
chr1:156671223|156671421 hsa-miR-1260a 0 1 0
chr1:156671223|156671421 hsa-miR-1913 1 0 0
chr1:156671223|156671421 hsa-miR-1260b 0 1 0
chr1:156671223|156671421 hsa-miR-4276 0 1 0
chr1:156671223|156671421 hsa-miR-4292 1 0 0
chr1:156671223|156671421 hsa-miR-4469 0 1 0
chr1:156671223|156671421 hsa-miR-4494 0 1 0
chr1:156671223|156671421 hsa-miR-3972 1 0 0
chr1:156671223|156671421 hsa-miR-5193 1 1 0
chr1:156671223|156671421 hsa-miR-15a-3p 1 0 0
chr1:156671223|156671421 hsa-miR-1273h-3p 0 1 0
chr1:156671223|156671421 hsa-miR-6836-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6720-5p 0 1 0
chr1:156671223|156671421 hsa-miR-6807-5p 0 1 0
chr1:156671223|156671421 hsa-miR-3189-5p 1 0 0
chr1:156671223|156671421 hsa-miR-4655-3p 1 0 0
chr1:156671223|156671421 hsa-miR-3194-5p 1 1 0
chr1:156671223|156671421 hsa-miR-6728-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6882-3p 1 0 0
chr1:156671223|156671421 hsa-miR-4436b-5p 0 1 0
chr1:156671223|156671421 hsa-miR-4793-5p 1 1 0
chr1:156671223|156671421 hsa-miR-4786-3p 0 1 0
chr1:156671223|156671421 hsa-miR-5001-3p 1 1 0
chr1:156671223|156671421 hsa-miR-7161-3p 0 1 0
chr1:156671223|156671421 hsa-miR-3667-3p 1 1 0
chr1:156671223|156671421 hsa-miR-4743-3p 0 1 0
chr1:156671223|156671421 hsa-miR-5196-3p 1 1 0
chr1:156671223|156671421 hsa-miR-4667-3p 0 1 0
chr1:156671223|156671421 hsa-miR-6736-3p 0 1 0
chr1:156671223|156671421 hsa-miR-7843-3p 0 1 0
chr1:156671223|156671421 hsa-miR-3158-5p 0 1 0
chr1:156671223|156671421 hsa-miR-339-5p 1 0 0
chr1:156671223|156671421 hsa-miR-4646-3p 1 1 0
chr1:156671223|156671421 hsa-miR-6870-3p 0 1 0
chr1:156671223|156671421 hsa-miR-7106-3p 0 1 0
chr1:156671223|156671421 hsa-miR-3158-3p 0 1 0
chr1:156671223|156671421 hsa-miR-670-3p 0 1 0
chr1:156671223|156671421 hsa-miR-383-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6741-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6895-3p 1 0 0
chr1:156671223|156671421 hsa-miR-3160-5p 0 1 0
chr1:156671223|156671421 hsa-miR-1914-5p 1 0 0
chr1:156671223|156671421 hsa-miR-5088-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6738-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6748-3p 1 1 0
chr1:156671223|156671421 hsa-miR-5584-3p 0 1 0
chr1:156671223|156671421 hsa-miR-6812-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6759-3p 1 0 0
chr1:156671223|156671421 hsa-miR-133a-3p 0 1 0
chr1:156671223|156671421 hsa-miR-320a-5p 1 1 0
chr1:156671223|156671421 hsa-miR-6754-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6877-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6893-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6792-3p 0 1 0
chr1:156671223|156671421 hsa-miR-6805-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6829-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6512-3p 0 1 0
chr1:156671223|156671421 hsa-miR-6819-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6891-3p 1 1 0
chr1:156671223|156671421 hsa-miR-6783-3p 1 0 0
chr1:156671223|156671421 hsa-miR-4691-5p 0 1 0
chr1:156671223|156671421 hsa-miR-509-5p 0 1 0
chr1:156671223|156671421 hsa-miR-5699-3p 1 1 0
chr1:156671223|156671421 hsa-miR-6874-3p 1 0 0
chr1:156671223|156671421 hsa-miR-6820-3p 1 0 0
chr1:156671223|156671421 hsa-miR-1250-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:156671223|156671421
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence LGKGEYQESLRSLEEEGQELPQSADVQRWEDTVEKDQELAQESPPGMAGVENEDEAELNLREQDGF
Nucleotide Sequence CTGGGAAAGGGAGAGTACCAAGAGTCACTGAGGTCTCTGGAGGAGGAGGGACAGGAGCTGCCGCAGTCTGCAGATGTGCAGAGGTGGGAAGATACGGTGGAGAAGGACCAAGAACTGGCTCAGGAAAGCCCTCCTGGGATGGCTGGAGTGGAAAATGAGGATGAGGCAGAGCTGAATCTGAGGGAGCAGGATGGCTTC
CircID chr1:156671223|156671421
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MQMCRGGKIRWRRTKNWLRKALLGWLEWKMRMRQS
Nucleotide Sequence CTGCAGATGTGCAGAGGTGGGAAGATACGGTGGAGAAGGACCAAGAACTGGCTCAGGAAAGCCCTCCTGGGATGGCTGGAGTGGAAAATGAGGATGAGGCAGAGCTGA
CircID chr1:156671223|156671421
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MPHPHFPLQPSQEGFPEPVLGPSPPYLPTSAHLQTAAAPVPPPPETSVTLGTLPFP
Nucleotide Sequence CTGCCTCATCCTCATTTTCCACTCCAGCCATCCCAGGAGGGCTTTCCTGAGCCAGTTCTTGGTCCTTCTCCACCGTATCTTCCCACCTCTGCACATCTGCAGACTGCGGCAGCTCCTGTCCCTCCTCCTCCAGAGACCTCAGTGACTCTTGGTACTCTCCCTTTCCCA
CircID chr1:156671223|156671421
ORF Type ORF4
Protein Length 54
Nucleotide Length 165
Protein Sequence MLPQIQLCLILIFHSSHPRRAFLSQFLVLLHRIFPPLHICRLRQLLSLLLQRPQ
Nucleotide Sequence CTGCTCCCTCAGATTCAGCTCTGCCTCATCCTCATTTTCCACTCCAGCCATCCCAGGAGGGCTTTCCTGAGCCAGTTCTTGGTCCTTCTCCACCGTATCTTCCCACCTCTGCACATCTGCAGACTGCGGCAGCTCCTGTCCCTCCTCCTCCAGAGACCTCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab