CircRNA Information

General Information
circRNA Basic Information
CircID chr1:156786878|156787073
Strand +
CircType exon
Host Gene ENSG00000143294.13;
Algorism CIRI2;
Sequence CTGCTGCCATCTTGAATTCAAGGGGGGCATTGGCTGCATCGTCCTGGAAAGCCGGCTCTGGTTCCGTGCCTGGAGGCAGCTCTTCAGGGACAGTGGGGATGGGGTAAGGGTATGGCTCAACTCCAGGTGGCTCAGCCTTTTCAGGGAGGGAGAAAAAGTTTTCGGGGGCTACTTCCTCATCACTGTCGTCTTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:156786878|156787073 hsa-miR-22-5p 0 0 1
chr1:156786878|156787073 hsa-miR-22-3p 0 0 1
chr1:156786878|156787073 hsa-miR-558 0 0 1
chr1:156786878|156787073 hsa-miR-562 0 0 1
chr1:156786878|156787073 hsa-miR-564 0 1 1
chr1:156786878|156787073 hsa-miR-619-5p 0 0 1
chr1:156786878|156787073 hsa-miR-619-3p 0 0 1
chr1:156786878|156787073 hsa-miR-665 0 0 1
chr1:156786878|156787073 hsa-miR-885-3p 0 0 1
chr1:156786878|156787073 hsa-miR-125a-5p 0 0 1
chr1:156786878|156787073 hsa-miR-125b 0 0 1
chr1:156786878|156787073 hsa-miR-219-1-3p 0 0 1
chr1:156786878|156787073 hsa-miR-365 0 0 1
chr1:156786878|156787073 hsa-miR-1203 1 0 0
chr1:156786878|156787073 hsa-miR-1322 0 1 0
chr1:156786878|156787073 hsa-miR-1825 0 1 0
chr1:156786878|156787073 hsa-miR-3185 0 1 0
chr1:156786878|156787073 hsa-miR-4269 0 1 0
chr1:156786878|156787073 hsa-miR-3943 1 0 0
chr1:156786878|156787073 hsa-miR-4478 0 1 0
chr1:156786878|156787073 hsa-miR-4663 0 1 0
chr1:156786878|156787073 hsa-miR-4673 1 1 0
chr1:156786878|156787073 hsa-miR-8081 0 1 0
chr1:156786878|156787073 hsa-miR-219a-1-3p 0 1 0
chr1:156786878|156787073 hsa-miR-3622a-5p 0 1 0
chr1:156786878|156787073 hsa-miR-6807-5p 0 1 0
chr1:156786878|156787073 hsa-miR-4709-3p 0 1 0
chr1:156786878|156787073 hsa-miR-3189-5p 1 0 0
chr1:156786878|156787073 hsa-miR-1915-5p 1 0 0
chr1:156786878|156787073 hsa-miR-345-3p 0 1 0
chr1:156786878|156787073 hsa-miR-6870-3p 0 1 0
chr1:156786878|156787073 hsa-miR-6867-3p 0 1 0
chr1:156786878|156787073 hsa-miR-6760-3p 0 1 0
chr1:156786878|156787073 hsa-miR-454-5p 1 1 0
chr1:156786878|156787073 hsa-miR-6748-3p 1 0 0
chr1:156786878|156787073 hsa-miR-6798-3p 1 0 0
chr1:156786878|156787073 hsa-miR-6729-3p 0 1 0
chr1:156786878|156787073 hsa-miR-4685-3p 0 1 0
chr1:156786878|156787073 hsa-miR-1915-3p 1 0 0
chr1:156786878|156787073 hsa-miR-324-3p 1 0 0
chr1:156786878|156787073 hsa-miR-520e-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:156786878|156787073
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MHRPGKPALVPCLEAALQGQWGWGKGMAQLQVAQPFQGGRKSFRGLLPHHCRLL
Nucleotide Sequence CTGCATCGTCCTGGAAAGCCGGCTCTGGTTCCGTGCCTGGAGGCAGCTCTTCAGGGACAGTGGGGATGGGGTAAGGGTATGGCTCAACTCCAGGTGGCTCAGCCTTTTCAGGGAGGGAGAAAAAGTTTTCGGGGGCTACTTCCTCATCACTGTCGTCTTCTT
CircID chr1:156786878|156787073
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MESRLWFRAWRQLFRDSGDGVRVWLNSRWLSLFREGEKVFGGYFLITVVFF
Nucleotide Sequence CTGGAAAGCCGGCTCTGGTTCCGTGCCTGGAGGCAGCTCTTCAGGGACAGTGGGGATGGGGTAAGGGTATGGCTCAACTCCAGGTGGCTCAGCCTTTTCAGGGAGGGAGAAAAAGTTTTCGGGGGCTACTTCCTCATCACTGTCGTCTTCTTC
CircID chr1:156786878|156787073
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MNSRGALAASSWKAGSGSVPGGSSSGTVGMG
Nucleotide Sequence TTGAATTCAAGGGGGGCATTGGCTGCATCGTCCTGGAAAGCCGGCTCTGGTTCCGTGCCTGGAGGCAGCTCTTCAGGGACAGTGGGGATGGGGTAA
CircID chr1:156786878|156787073
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MPPGTEPEPAFQDDAANAPLEFKMAA
Nucleotide Sequence CTGCCTCCAGGCACGGAACCAGAGCCGGCTTTCCAGGACGATGCAGCCAATGCCCCCCTTGAATTCAAGATGGCAGCA
CircID chr1:156786878|156787073
ORF Type ORF5
Protein Length 48
Nucleotide Length 144
Protein Sequence MKRLSHLELSHTLTPSPLSLKSCLQARNQSRLSRTMQPMPPLNSRWQQ
Nucleotide Sequence CTGAAAAGGCTGAGCCACCTGGAGTTGAGCCATACCCTTACCCCATCCCCACTGTCCCTGAAGAGCTGCCTCCAGGCACGGAACCAGAGCCGGCTTTCCAGGACGATGCAGCCAATGCCCCCCTTGAATTCAAGATGGCAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab