CircRNA Information

General Information
circRNA Basic Information
CircID chr1:15928722|15928907
Strand +
CircType exon
Host Gene ENSG00000065526.9;
Algorism CIRI2;
Sequence CTTTCCCTCTTTCTCTTTCACTCGAGTCAAAACCACGCAAGGCATGAGTTCCAGGCGGTTTTTCGCTATTCCCTCTTTGTCAGCTTTCTCTCTGCTCAGTTTATTACAACTCCTGGGCTTTTCAGGGCTTTGCTCTCGCTCATTTTCTTGGTCCGTTTCTGAAGACTGAGAACTAGGGGAGTGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:15928722|15928907 hsa-miR-320a-5p 0 0 1
chr1:15928722|15928907 hsa-miR-320a-3p 0 0 1
chr1:15928722|15928907 hsa-miR-583 0 0 1
chr1:15928722|15928907 hsa-miR-622 0 0 1
chr1:15928722|15928907 hsa-miR-665 0 0 1
chr1:15928722|15928907 hsa-miR-548g-5p 0 0 1
chr1:15928722|15928907 hsa-miR-548g-3p 0 0 1
chr1:15928722|15928907 hsa-miR-532-5p 0 1 1
chr1:15928722|15928907 hsa-miR-320b 1 1 1
chr1:15928722|15928907 hsa-miR-320c 1 1 1
chr1:15928722|15928907 hsa-miR-483-3p 0 0 1
chr1:15928722|15928907 hsa-miR-320d 0 1 1
chr1:15928722|15928907 hsa-miR-548d-3p 0 0 1
chr1:15928722|15928907 hsa-miR-1254 0 0 1
chr1:15928722|15928907 hsa-miR-612 1 0 0
chr1:15928722|15928907 hsa-miR-661 1 1 0
chr1:15928722|15928907 hsa-miR-761 1 0 0
chr1:15928722|15928907 hsa-miR-936 1 0 0
chr1:15928722|15928907 hsa-miR-1291 0 1 0
chr1:15928722|15928907 hsa-miR-3125 1 1 0
chr1:15928722|15928907 hsa-miR-3153 1 0 0
chr1:15928722|15928907 hsa-miR-3175 1 0 0
chr1:15928722|15928907 hsa-miR-4270 1 0 0
chr1:15928722|15928907 hsa-miR-3916 1 0 0
chr1:15928722|15928907 hsa-miR-3945 1 0 0
chr1:15928722|15928907 hsa-miR-548z 0 1 0
chr1:15928722|15928907 hsa-miR-4429 0 1 0
chr1:15928722|15928907 hsa-miR-4430 1 0 0
chr1:15928722|15928907 hsa-miR-4462 1 0 0
chr1:15928722|15928907 hsa-miR-4496 1 0 0
chr1:15928722|15928907 hsa-miR-4499 1 0 0
chr1:15928722|15928907 hsa-miR-4526 1 0 0
chr1:15928722|15928907 hsa-miR-4539 1 0 0
chr1:15928722|15928907 hsa-miR-4644 1 0 0
chr1:15928722|15928907 hsa-miR-4656 1 0 0
chr1:15928722|15928907 hsa-miR-4754 1 0 0
chr1:15928722|15928907 hsa-miR-4779 1 1 0
chr1:15928722|15928907 hsa-miR-4788 1 0 0
chr1:15928722|15928907 hsa-miR-5739 1 0 0
chr1:15928722|15928907 hsa-miR-6088 1 0 0
chr1:15928722|15928907 hsa-miR-6090 1 0 0
chr1:15928722|15928907 hsa-miR-6860 1 0 0
chr1:15928722|15928907 hsa-miR-8085 1 0 0
chr1:15928722|15928907 hsa-miR-12120 1 0 0
chr1:15928722|15928907 hsa-miR-671-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6510-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6833-5p 1 0 0
chr1:15928722|15928907 hsa-miR-1236-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6873-5p 0 1 0
chr1:15928722|15928907 hsa-miR-6746-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6798-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6760-5p 1 0 0
chr1:15928722|15928907 hsa-miR-2467-3p 1 0 0
chr1:15928722|15928907 hsa-miR-6821-5p 1 1 0
chr1:15928722|15928907 hsa-miR-193b-5p 1 0 0
chr1:15928722|15928907 hsa-miR-30c-2-3p 1 0 0
chr1:15928722|15928907 hsa-miR-3160-3p 1 0 0
chr1:15928722|15928907 hsa-miR-937-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6878-5p 1 0 0
chr1:15928722|15928907 hsa-miR-4776-5p 1 0 0
chr1:15928722|15928907 hsa-miR-7846-3p 1 0 0
chr1:15928722|15928907 hsa-miR-6832-5p 1 0 0
chr1:15928722|15928907 hsa-miR-4444 1 0 0
chr1:15928722|15928907 hsa-miR-6812-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6865-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6754-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6788-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6797-5p 1 0 0
chr1:15928722|15928907 hsa-miR-4649-5p 1 1 0
chr1:15928722|15928907 hsa-miR-6729-5p 1 0 0
chr1:15928722|15928907 hsa-miR-3187-5p 1 0 0
chr1:15928722|15928907 hsa-miR-6856-5p 1 0 0
chr1:15928722|15928907 hsa-miR-3116 0 1 0
chr1:15928722|15928907 hsa-miR-4646-5p 1 0 0
chr1:15928722|15928907 hsa-miR-548ay-3p 0 1 0
chr1:15928722|15928907 hsa-miR-548h-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:15928722|15928907
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MSSRRFFAIPSLSAFSLLSLLQLLGFSGLCSRSFSWSVSED
Nucleotide Sequence ATGAGTTCCAGGCGGTTTTTCGCTATTCCCTCTTTGTCAGCTTTCTCTCTGCTCAGTTTATTACAACTCCTGGGCTTTTCAGGGCTTTGCTCTCGCTCATTTTCTTGGTCCGTTTCTGAAGACTGA
CircID chr1:15928722|15928907
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MSREKADKEGIAKNRLELMPCVVLTRVKEKEGK
Nucleotide Sequence CTGAGCAGAGAGAAAGCTGACAAAGAGGGAATAGCGAAAAACCGCCTGGAACTCATGCCTTGCGTGGTTTTGACTCGAGTGAAAGAGAAAGAGGGAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab