CircRNA Information

General Information
circRNA Basic Information
CircID chr1:15942103|15942359
Strand -
CircType exon
Host Gene ENSG00000116809.10;
Algorism CIRI2;
Sequence CTGGCCCATACTGCTGATAGAAGTCCGCGTCTGTCTGGAACATGACCAGTGCCTGGGCTGTGTGGATTCGCACATGCTGAGCCAGGCTGTTGGCATCCAGAAACTTGTCCCCACAGGAGTCACAGGCGTAGAGGATGTGAGTGTTGGGGTCTGTGGAGGTGGGGCAGCAGTCAGAGTGGGAAGGACCCCGGGCTCTGCCCACATTCACACCCGGGTGGCCCCCCTCACCTTCTTCCTGCACTTGCTTCACAGCTTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:15942103|15942359 hsa-miR-214-5p 0 0 1
chr1:15942103|15942359 hsa-miR-214-3p 0 0 1
chr1:15942103|15942359 hsa-miR-134-5p 0 0 1
chr1:15942103|15942359 hsa-miR-134-3p 0 0 1
chr1:15942103|15942359 hsa-miR-149-5p 0 0 1
chr1:15942103|15942359 hsa-miR-149-3p 0 0 1
chr1:15942103|15942359 hsa-miR-320a-5p 0 0 1
chr1:15942103|15942359 hsa-miR-320a-3p 0 0 1
chr1:15942103|15942359 hsa-miR-345-5p 0 0 1
chr1:15942103|15942359 hsa-miR-345-3p 0 0 1
chr1:15942103|15942359 hsa-miR-922 0 0 1
chr1:15942103|15942359 hsa-miR-1286 0 0 1
chr1:15942103|15942359 hsa-miR-1299 0 0 1
chr1:15942103|15942359 hsa-miR-1257 0 1 1
chr1:15942103|15942359 hsa-miR-1324 0 1 1
chr1:15942103|15942359 hsa-miR-491-5p 0 0 1
chr1:15942103|15942359 hsa-miR-615-5p 0 1 1
chr1:15942103|15942359 hsa-miR-299-3p 0 0 1
chr1:15942103|15942359 hsa-miR-423-5p 0 0 1
chr1:15942103|15942359 hsa-miR-525-5p 0 0 1
chr1:15942103|15942359 hsa-miR-1224-3p 0 1 1
chr1:15942103|15942359 hsa-miR-188-3p 0 0 1
chr1:15942103|15942359 hsa-miR-324-3p 0 0 1
chr1:15942103|15942359 hsa-miR-520a-5p 0 0 1
chr1:15942103|15942359 hsa-miR-320b 0 0 1
chr1:15942103|15942359 hsa-miR-320c 0 0 1
chr1:15942103|15942359 hsa-miR-320d 0 0 1
chr1:15942103|15942359 hsa-miR-519b-3p 0 0 1
chr1:15942103|15942359 hsa-miR-519c-3p 0 0 1
chr1:15942103|15942359 hsa-miR-1260 0 0 1
chr1:15942103|15942359 hsa-miR-516b 0 0 1
chr1:15942103|15942359 hsa-miR-24 0 0 1
chr1:15942103|15942359 hsa-miR-519a 0 0 1
chr1:15942103|15942359 hsa-miR-637 1 0 0
chr1:15942103|15942359 hsa-miR-661 1 0 0
chr1:15942103|15942359 hsa-miR-762 1 0 0
chr1:15942103|15942359 hsa-miR-943 0 1 0
chr1:15942103|15942359 hsa-miR-1183 1 0 0
chr1:15942103|15942359 hsa-miR-1538 1 0 0
chr1:15942103|15942359 hsa-miR-1913 0 1 0
chr1:15942103|15942359 hsa-miR-3131 1 0 0
chr1:15942103|15942359 hsa-miR-3185 0 1 0
chr1:15942103|15942359 hsa-miR-4322 0 1 0
chr1:15942103|15942359 hsa-miR-4265 0 1 0
chr1:15942103|15942359 hsa-miR-3651 1 1 0
chr1:15942103|15942359 hsa-miR-3665 1 0 0
chr1:15942103|15942359 hsa-miR-4673 1 1 0
chr1:15942103|15942359 hsa-miR-4739 0 1 0
chr1:15942103|15942359 hsa-miR-4754 1 0 0
chr1:15942103|15942359 hsa-miR-5683 0 1 0
chr1:15942103|15942359 hsa-miR-5685 0 1 0
chr1:15942103|15942359 hsa-miR-5706 0 1 0
chr1:15942103|15942359 hsa-miR-12115 1 0 0
chr1:15942103|15942359 hsa-miR-6765-5p 1 1 0
chr1:15942103|15942359 hsa-miR-6894-5p 1 0 0
chr1:15942103|15942359 hsa-miR-6880-5p 1 0 0
chr1:15942103|15942359 hsa-miR-7847-3p 1 0 0
chr1:15942103|15942359 hsa-miR-6746-5p 1 0 0
chr1:15942103|15942359 hsa-miR-6875-3p 0 1 0
chr1:15942103|15942359 hsa-miR-4728-3p 1 0 0
chr1:15942103|15942359 hsa-miR-3180-3p 1 0 0
chr1:15942103|15942359 hsa-miR-6760-5p 0 1 0
chr1:15942103|15942359 hsa-miR-6810-5p 0 1 0
chr1:15942103|15942359 hsa-miR-6735-3p 0 1 0
chr1:15942103|15942359 hsa-miR-1229-5p 0 1 0
chr1:15942103|15942359 hsa-miR-4732-5p 1 0 0
chr1:15942103|15942359 hsa-miR-4758-3p 0 1 0
chr1:15942103|15942359 hsa-miR-6818-5p 0 1 0
chr1:15942103|15942359 hsa-miR-3940-3p 1 1 0
chr1:15942103|15942359 hsa-miR-6777-3p 0 1 0
chr1:15942103|15942359 hsa-miR-4433b-5p 0 1 0
chr1:15942103|15942359 hsa-miR-6734-3p 0 1 0
chr1:15942103|15942359 hsa-miR-1207-5p 1 0 0
chr1:15942103|15942359 hsa-miR-6743-5p 1 0 0
chr1:15942103|15942359 hsa-miR-1249-5p 1 0 0
chr1:15942103|15942359 hsa-miR-6879-5p 1 0 0
chr1:15942103|15942359 hsa-miR-328-5p 1 0 0
chr1:15942103|15942359 hsa-miR-4745-5p 1 0 0
chr1:15942103|15942359 hsa-miR-6846-5p 1 0 0
chr1:15942103|15942359 hsa-miR-6848-5p 1 0 0
chr1:15942103|15942359 hsa-miR-4436b-3p 1 0 0
chr1:15942103|15942359 hsa-miR-6511b-5p 1 0 0
chr1:15942103|15942359 hsa-miR-1914-3p 1 0 0
chr1:15942103|15942359 hsa-miR-6792-3p 1 1 0
chr1:15942103|15942359 hsa-miR-5009-5p 0 1 0
chr1:15942103|15942359 hsa-miR-4723-3p 1 0 0
chr1:15942103|15942359 hsa-miR-301a-5p 0 1 0
chr1:15942103|15942359 hsa-miR-301b-5p 0 1 0
chr1:15942103|15942359 hsa-miR-3145-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:15942103|15942359
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence MCGFAHAEPGCWHPETCPHRSHRRRGCECWGLWRWGSSQSGKDPGLCPHSHPGGPPHLLPALASQL
Nucleotide Sequence CTGTGTGGATTCGCACATGCTGAGCCAGGCTGTTGGCATCCAGAAACTTGTCCCCACAGGAGTCACAGGCGTAGAGGATGTGAGTGTTGGGGTCTGTGGAGGTGGGGCAGCAGTCAGAGTGGGAAGGACCCCGGGCTCTGCCCACATTCACACCCGGGTGGCCCCCCTCACCTTCTTCCTGCACTTGCTTCACAGCTT
CircID chr1:15942103|15942359
ORF Type ORF2
Protein Length 82
Nucleotide Length 246
Protein Sequence MLIEVRVCLEHDQCLGCVDSHMLSQAVGIQKLVPTGVTGVEDVSVGVCGGGAAVRVGRTPGSAHIHTRVAPLTFFLHLLHSF
Nucleotide Sequence CTGCTGATAGAAGTCCGCGTCTGTCTGGAACATGACCAGTGCCTGGGCTGTGTGGATTCGCACATGCTGAGCCAGGCTGTTGGCATCCAGAAACTTGTCCCCACAGGAGTCACAGGCGTAGAGGATGTGAGTGTTGGGGTCTGTGGAGGTGGGGCAGCAGTCAGAGTGGGAAGGACCCCGGGCTCTGCCCACATTCACACCCGGGTGGCCCCCCTCACCTTCTTCCTGCACTTGCTTCACAGCTTT
CircID chr1:15942103|15942359
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MGSVEVGQQSEWEGPRALPTFTPGWPPSPSSCTCFTAL
Nucleotide Sequence TTGGGGTCTGTGGAGGTGGGGCAGCAGTCAGAGTGGGAAGGACCCCGGGCTCTGCCCACATTCACACCCGGGTGGCCCCCCTCACCTTCTTCCTGCACTTGCTTCACAGCTTTG
CircID chr1:15942103|15942359
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MWGQVSGCQQPGSACANPHSPGTGHVPDRRGLLSAVWA
Nucleotide Sequence CTGTGGGGACAAGTTTCTGGATGCCAACAGCCTGGCTCAGCATGTGCGAATCCACACAGCCCAGGCACTGGTCATGTTCCAGACAGACGCGGACTTCTATCAGCAGTATGGGCC
CircID chr1:15942103|15942359
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MDANSLAQHVRIHTAQALVMFQTDADFYQQYGP
Nucleotide Sequence CTGGATGCCAACAGCCTGGCTCAGCATGTGCGAATCCACACAGCCCAGGCACTGGTCATGTTCCAGACAGACGCGGACTTCTATCAGCAGTATGGGCCA
CircID chr1:15942103|15942359
ORF Type ORF6
Protein Length 68
Nucleotide Length 204
Protein Sequence MWAEPGVLPTLTAAPPPQTPTLTSSTPVTPVGTSFWMPTAWLSMCESTQPRHWSCSRQTRTSISSMGQ
Nucleotide Sequence ATGTGGGCAGAGCCCGGGGTCCTTCCCACTCTGACTGCTGCCCCACCTCCACAGACCCCAACACTCACATCCTCTACGCCTGTGACTCCTGTGGGGACAAGTTTCTGGATGCCAACAGCCTGGCTCAGCATGTGCGAATCCACACAGCCCAGGCACTGGTCATGTTCCAGACAGACGCGGACTTCTATCAGCAGTATGGGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab