CircRNA Information

General Information
circRNA Basic Information
CircID chr1:15948291|15973125
Strand -
CircType exon
Host Gene ENSG00000116809.10;
Algorism CIRI2;
Sequence CTGCCGCGTTACTGATGTCCAGGTGCACCACGTCCTTCTGGTCCACGAAGAGCATCTTGAAGTACTCGCTGCAGGCCGCCAGCACTGCTTTATGAGCCTTAAAGTGAACACCGTCCACCACAAAGGTGCAGTCACAGAGAAGCCCCAGCTGCCGCTGCTGGTTCAGCTGTTCCAAGACATGCTGGCTGTGCTGGGGAAAGTCCATGGCTCAGATTTCCAGACAGCCCAGGCTACTCTTTTCTGACAGTTTGCCTGTGTAAACTCCAGCTTGGCTCCCCTCGTCCGGCTCATTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:15948291|15973125 hsa-miR-134-5p 0 0 1
chr1:15948291|15973125 hsa-miR-134-3p 0 0 1
chr1:15948291|15973125 hsa-miR-184 0 0 1
chr1:15948291|15973125 hsa-miR-431-5p 0 0 1
chr1:15948291|15973125 hsa-miR-431-3p 0 0 1
chr1:15948291|15973125 hsa-miR-432-5p 0 0 1
chr1:15948291|15973125 hsa-miR-432-3p 0 0 1
chr1:15948291|15973125 hsa-miR-523-5p 0 0 1
chr1:15948291|15973125 hsa-miR-523-3p 0 0 1
chr1:15948291|15973125 hsa-miR-503-5p 0 0 1
chr1:15948291|15973125 hsa-miR-503-3p 0 0 1
chr1:15948291|15973125 hsa-miR-596 0 0 1
chr1:15948291|15973125 hsa-miR-619-5p 0 0 1
chr1:15948291|15973125 hsa-miR-619-3p 0 0 1
chr1:15948291|15973125 hsa-miR-626 0 0 1
chr1:15948291|15973125 hsa-miR-634 0 1 1
chr1:15948291|15973125 hsa-miR-661 1 1 1
chr1:15948291|15973125 hsa-miR-939-5p 0 0 1
chr1:15948291|15973125 hsa-miR-939-3p 0 0 1
chr1:15948291|15973125 hsa-miR-942-5p 0 0 1
chr1:15948291|15973125 hsa-miR-942-3p 0 0 1
chr1:15948291|15973125 hsa-miR-1231 0 0 1
chr1:15948291|15973125 hsa-miR-1234-3p 0 0 1
chr1:15948291|15973125 hsa-miR-1299 0 1 1
chr1:15948291|15973125 hsa-miR-548g-5p 0 0 1
chr1:15948291|15973125 hsa-miR-548g-3p 0 0 1
chr1:15948291|15973125 hsa-miR-1234 0 0 1
chr1:15948291|15973125 hsa-miR-512-3p 0 0 1
chr1:15948291|15973125 hsa-miR-1184 0 1 1
chr1:15948291|15973125 hsa-miR-1207-3p 0 0 1
chr1:15948291|15973125 hsa-miR-875-3p 0 1 1
chr1:15948291|15973125 hsa-miR-338-3p 0 0 1
chr1:15948291|15973125 hsa-miR-557 1 0 0
chr1:15948291|15973125 hsa-miR-762 1 0 0
chr1:15948291|15973125 hsa-miR-1293 1 0 0
chr1:15948291|15973125 hsa-miR-1538 1 0 0
chr1:15948291|15973125 hsa-miR-2278 0 1 0
chr1:15948291|15973125 hsa-miR-4303 0 1 0
chr1:15948291|15973125 hsa-miR-1268b 1 0 0
chr1:15948291|15973125 hsa-miR-378g 0 1 0
chr1:15948291|15973125 hsa-miR-4439 1 0 0
chr1:15948291|15973125 hsa-miR-1587 1 0 0
chr1:15948291|15973125 hsa-miR-4537 1 1 0
chr1:15948291|15973125 hsa-miR-4539 0 1 0
chr1:15948291|15973125 hsa-miR-3960 1 0 0
chr1:15948291|15973125 hsa-miR-4675 1 0 0
chr1:15948291|15973125 hsa-miR-4741 1 1 0
chr1:15948291|15973125 hsa-miR-4785 1 0 0
chr1:15948291|15973125 hsa-miR-6081 1 0 0
chr1:15948291|15973125 hsa-miR-8060 0 1 0
chr1:15948291|15973125 hsa-miR-6734-5p 1 1 0
chr1:15948291|15973125 hsa-miR-6765-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6894-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6799-5p 1 0 0
chr1:15948291|15973125 hsa-miR-8071 1 0 0
chr1:15948291|15973125 hsa-miR-505-5p 0 1 0
chr1:15948291|15973125 hsa-miR-6820-5p 0 1 0
chr1:15948291|15973125 hsa-miR-1292-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6829-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6827-5p 0 1 0
chr1:15948291|15973125 hsa-miR-6810-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6815-3p 0 1 0
chr1:15948291|15973125 hsa-miR-4640-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4743-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4638-3p 0 1 0
chr1:15948291|15973125 hsa-miR-6824-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6781-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6877-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4800-5p 1 1 0
chr1:15948291|15973125 hsa-miR-4776-5p 1 1 0
chr1:15948291|15973125 hsa-miR-4724-5p 0 1 0
chr1:15948291|15973125 hsa-miR-4804-5p 1 0 0
chr1:15948291|15973125 hsa-miR-3675-5p 0 1 0
chr1:15948291|15973125 hsa-miR-500a-3p 0 1 0
chr1:15948291|15973125 hsa-miR-10400-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4763-3p 1 0 0
chr1:15948291|15973125 hsa-miR-5001-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6726-5p 1 0 0
chr1:15948291|15973125 hsa-miR-3620-5p 1 1 0
chr1:15948291|15973125 hsa-miR-4728-5p 1 0 0
chr1:15948291|15973125 hsa-miR-328-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4632-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4649-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4726-5p 1 1 0
chr1:15948291|15973125 hsa-miR-6729-5p 1 1 0
chr1:15948291|15973125 hsa-miR-6738-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6777-5p 0 1 0
chr1:15948291|15973125 hsa-miR-6795-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6887-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4723-5p 1 0 0
chr1:15948291|15973125 hsa-miR-4758-5p 1 0 0
chr1:15948291|15973125 hsa-miR-1914-3p 1 0 0
chr1:15948291|15973125 hsa-miR-3184-5p 1 0 0
chr1:15948291|15973125 hsa-miR-5591-5p 1 1 0
chr1:15948291|15973125 hsa-miR-6724-5p 1 0 0
chr1:15948291|15973125 hsa-miR-6753-3p 1 0 0
chr1:15948291|15973125 hsa-miR-3118 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:15948291|15973125
ORF Type ORF1
Protein Length 68
Nucleotide Length 207
Protein Sequence MVHEEHLEVLAAGRQHCFMSLKVNTVHHKGAVTEKPQLPLLVQLFQDMLAVLGKVHGSDFQTAQATLF
Nucleotide Sequence CTGGTCCACGAAGAGCATCTTGAAGTACTCGCTGCAGGCCGCCAGCACTGCTTTATGAGCCTTAAAGTGAACACCGTCCACCACAAAGGTGCAGTCACAGAGAAGCCCCAGCTGCCGCTGCTGGTTCAGCTGTTCCAAGACATGCTGGCTGTGCTGGGGAAAGTCCATGGCTCAGATTTCCAGACAGCCCAGGCTACTCTTTTCTGA
CircID chr1:15948291|15973125
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MMSRCTTSFWSTKSILKYSLQAASTAL
Nucleotide Sequence CTGATGTCCAGGTGCACCACGTCCTTCTGGTCCACGAAGAGCATCTTGAAGTACTCGCTGCAGGCCGCCAGCACTGCTTTATGA
CircID chr1:15948291|15973125
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MSRTRGAKLEFTQANCQKRVAWAVWKSEPWTFPSTASMSWNS
Nucleotide Sequence ATGAGCCGGACGAGGGGAGCCAAGCTGGAGTTTACACAGGCAAACTGTCAGAAAAGAGTAGCCTGGGCTGTCTGGAAATCTGAGCCATGGACTTTCCCCAGCACAGCCAGCATGTCTTGGAACAGCTGA
CircID chr1:15948291|15973125
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MWWTVFTLRLIKQCWRPAASTSRCSSWTRRTWCTWTSVTRQ
Nucleotide Sequence TTGTGGTGGACGGTGTTCACTTTAAGGCTCATAAAGCAGTGCTGGCGGCCTGCAGCGAGTACTTCAAGATGCTCTTCGTGGACCAGAAGGACGTGGTGCACCTGGACATCAGTAACGCGGCAG
CircID chr1:15948291|15973125
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MSGNLSHGLSPAQPACLGTAEPAAAAGASL
Nucleotide Sequence CTGTCTGGAAATCTGAGCCATGGACTTTCCCCAGCACAGCCAGCATGTCTTGGAACAGCTGAACCAGCAGCGGCAGCTGGGGCTTCTCTGTGA
CircID chr1:15948291|15973125
ORF Type ORF6
Protein Length 68
Nucleotide Length 204
Protein Sequence MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAA
Nucleotide Sequence ATGGACTTTCCCCAGCACAGCCAGCATGTCTTGGAACAGCTGAACCAGCAGCGGCAGCTGGGGCTTCTCTGTGACTGCACCTTTGTGGTGGACGGTGTTCACTTTAAGGCTCATAAAGCAGTGCTGGCGGCCTGCAGCGAGTACTTCAAGATGCTCTTCGTGGACCAGAAGGACGTGGTGCACCTGGACATCAGTAACGCGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab