CircRNA Information

General Information
circRNA Basic Information
CircID chr1:160091565|160091901
Strand +
CircType exon
Host Gene ENSG00000162729.12;
Algorism CIRI2;
Sequence AGGGGTGGCCCTAGTCACTGGTGCCACTGTCCTTGGTACCATCACTTGCTGCTTCATGAAGAGGCTTCGAAAACGGTGATCCCTTACTCCCCAGGTGAGGGAAAAGAACCCCCCAACCTTGTTTTCATTGGGCTTCCCACCCCCAAGTCCTGAACCAAGCTGCTCCCTCCCAGGCCCCACCTGGAGGAGGAGTAGGCAGCTCAGATCCACAGGGCCCTGTTAAGGGGTGGAGGCCGCGAGGGAGCCCCACTCAGGGCTCTCTGTCCTTAGCCCACACCGGGCACCCTTTTCAGGTCTTGCAGGTGTCGACTGTCTTCCGGCCCAGCTCCAAGCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:160091565|160091901 hsa-miR-15a-5p 0 0 1
chr1:160091565|160091901 hsa-miR-15a-3p 0 0 1
chr1:160091565|160091901 hsa-miR-22-5p 0 0 1
chr1:160091565|160091901 hsa-miR-22-3p 0 0 1
chr1:160091565|160091901 hsa-miR-15b-5p 0 0 1
chr1:160091565|160091901 hsa-miR-15b-3p 0 0 1
chr1:160091565|160091901 hsa-miR-195-5p 0 0 1
chr1:160091565|160091901 hsa-miR-195-3p 0 0 1
chr1:160091565|160091901 hsa-miR-424-5p 0 0 1
chr1:160091565|160091901 hsa-miR-424-3p 0 0 1
chr1:160091565|160091901 hsa-miR-433-5p 0 0 1
chr1:160091565|160091901 hsa-miR-433-3p 0 0 1
chr1:160091565|160091901 hsa-miR-432-5p 0 0 1
chr1:160091565|160091901 hsa-miR-432-3p 0 0 1
chr1:160091565|160091901 hsa-miR-497-5p 0 0 1
chr1:160091565|160091901 hsa-miR-497-3p 0 0 1
chr1:160091565|160091901 hsa-miR-558 0 0 1
chr1:160091565|160091901 hsa-miR-570-5p 0 0 1
chr1:160091565|160091901 hsa-miR-570-3p 0 0 1
chr1:160091565|160091901 hsa-miR-608 0 0 1
chr1:160091565|160091901 hsa-miR-624-5p 0 0 1
chr1:160091565|160091901 hsa-miR-624-3p 0 0 1
chr1:160091565|160091901 hsa-miR-646 0 0 1
chr1:160091565|160091901 hsa-miR-661 0 0 1
chr1:160091565|160091901 hsa-miR-659-5p 0 0 1
chr1:160091565|160091901 hsa-miR-659-3p 0 0 1
chr1:160091565|160091901 hsa-miR-1296-5p 0 0 1
chr1:160091565|160091901 hsa-miR-1296-3p 0 0 1
chr1:160091565|160091901 hsa-miR-939-5p 0 0 1
chr1:160091565|160091901 hsa-miR-939-3p 0 0 1
chr1:160091565|160091901 hsa-miR-1291 0 0 1
chr1:160091565|160091901 hsa-miR-1263 0 0 1
chr1:160091565|160091901 hsa-miR-1275 0 0 1
chr1:160091565|160091901 hsa-miR-671-5p 1 0 1
chr1:160091565|160091901 hsa-miR-146b-3p 0 0 1
chr1:160091565|160091901 hsa-miR-125a-5p 0 0 1
chr1:160091565|160091901 hsa-miR-1233 0 0 1
chr1:160091565|160091901 hsa-miR-125b 0 0 1
chr1:160091565|160091901 hsa-miR-642 0 0 1
chr1:160091565|160091901 hsa-miR-16 0 0 1
chr1:160091565|160091901 hsa-miR-7 0 0 1
chr1:160091565|160091901 hsa-miR-614 1 0 0
chr1:160091565|160091901 hsa-miR-663a 1 0 0
chr1:160091565|160091901 hsa-miR-762 1 0 0
chr1:160091565|160091901 hsa-miR-920 1 0 0
chr1:160091565|160091901 hsa-miR-1268a 1 0 0
chr1:160091565|160091901 hsa-miR-2861 1 0 0
chr1:160091565|160091901 hsa-miR-3147 1 0 0
chr1:160091565|160091901 hsa-miR-320e 1 0 0
chr1:160091565|160091901 hsa-miR-1268b 1 0 0
chr1:160091565|160091901 hsa-miR-4487 1 0 0
chr1:160091565|160091901 hsa-miR-4492 1 0 0
chr1:160091565|160091901 hsa-miR-4498 1 0 0
chr1:160091565|160091901 hsa-miR-4505 1 0 0
chr1:160091565|160091901 hsa-miR-4508 1 0 0
chr1:160091565|160091901 hsa-miR-1587 1 0 0
chr1:160091565|160091901 hsa-miR-4538 1 0 0
chr1:160091565|160091901 hsa-miR-4651 1 0 0
chr1:160091565|160091901 hsa-miR-4656 1 0 0
chr1:160091565|160091901 hsa-miR-4688 1 0 0
chr1:160091565|160091901 hsa-miR-4706 1 0 0
chr1:160091565|160091901 hsa-miR-5787 1 0 0
chr1:160091565|160091901 hsa-miR-6085 1 0 0
chr1:160091565|160091901 hsa-miR-6127 1 0 0
chr1:160091565|160091901 hsa-miR-8060 1 0 0
chr1:160091565|160091901 hsa-miR-8089 1 0 0
chr1:160091565|160091901 hsa-miR-150-3p 1 0 0
chr1:160091565|160091901 hsa-miR-3150a-3p 1 0 0
chr1:160091565|160091901 hsa-miR-6732-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6805-5p 1 0 0
chr1:160091565|160091901 hsa-miR-1224-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6782-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6874-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6786-5p 1 0 0
chr1:160091565|160091901 hsa-miR-5088-5p 1 0 0
chr1:160091565|160091901 hsa-miR-7109-5p 1 0 0
chr1:160091565|160091901 hsa-miR-4640-5p 1 0 0
chr1:160091565|160091901 hsa-miR-3127-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6749-5p 1 0 0
chr1:160091565|160091901 hsa-miR-4743-5p 1 0 0
chr1:160091565|160091901 hsa-miR-4787-5p 1 0 0
chr1:160091565|160091901 hsa-miR-4446-3p 1 0 0
chr1:160091565|160091901 hsa-miR-6781-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6877-5p 1 0 0
chr1:160091565|160091901 hsa-miR-654-5p 1 0 0
chr1:160091565|160091901 hsa-miR-1207-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6816-5p 1 0 0
chr1:160091565|160091901 hsa-miR-1343-5p 1 0 0
chr1:160091565|160091901 hsa-miR-5001-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6726-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6737-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6743-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6752-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6756-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6803-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6819-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6842-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6751-5p 1 0 0
chr1:160091565|160091901 hsa-miR-3620-5p 1 0 0
chr1:160091565|160091901 hsa-miR-5196-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6836-5p 1 0 0
chr1:160091565|160091901 hsa-miR-4685-5p 1 0 0
chr1:160091565|160091901 hsa-miR-4726-5p 1 0 0
chr1:160091565|160091901 hsa-miR-4745-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6846-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6848-5p 1 0 0
chr1:160091565|160091901 hsa-miR-6889-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:160091565|160091901
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MLLHEEASKTVIPYSPGEGKEPPNLVFIGLPTPKS
Nucleotide Sequence TTGCTGCTTCATGAAGAGGCTTCGAAAACGGTGATCCCTTACTCCCCAGGTGAGGGAAAAGAACCCCCCAACCTTGTTTTCATTGGGCTTCCCACCCCCAAGTCCTGA
CircID chr1:160091565|160091901
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MFSLGFPPPSPEPSCSLPGPTWRRSRQLRSTGPC
Nucleotide Sequence TTGTTTTCATTGGGCTTCCCACCCCCAAGTCCTGAACCAAGCTGCTCCCTCCCAGGCCCCACCTGGAGGAGGAGTAGGCAGCTCAGATCCACAGGGCCCTGTTAA
CircID chr1:160091565|160091901
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MNQAAPSQAPPGGGVGSSDPQGPVKGWRPRGSPTQGSLSLAHTGHPFQVLQVSTVFRPSSKP
Nucleotide Sequence CTGAACCAAGCTGCTCCCTCCCAGGCCCCACCTGGAGGAGGAGTAGGCAGCTCAGATCCACAGGGCCCTGTTAAGGGGTGGAGGCCGCGAGGGAGCCCCACTCAGGGCTCTCTGTCCTTAGCCCACACCGGGCACCCTTTTCAGGTCTTGCAGGTGTCGACTGTCTTCCGGCCCAGCTCCAAGCCC
CircID chr1:160091565|160091901
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MGSKGSPFSKPLHEAASDGTKDSGTSD
Nucleotide Sequence CTGGGGAGTAAGGGATCACCGTTTTCGAAGCCTCTTCATGAAGCAGCAAGTGATGGTACCAAGGACAGTGGCACCAGTGACTAG
CircID chr1:160091565|160091901
ORF Type ORF5
Protein Length 68
Nucleotide Length 204
Protein Sequence MSCLLLLQVGPGREQLGSGLGGGKPNENKVGGFFSLTWGVRDHRFRSLFMKQQVMVPRTVAPVTRATP
Nucleotide Sequence CTGAGCTGCCTACTCCTCCTCCAGGTGGGGCCTGGGAGGGAGCAGCTTGGTTCAGGACTTGGGGGTGGGAAGCCCAATGAAAACAAGGTTGGGGGGTTCTTTTCCCTCACCTGGGGAGTAAGGGATCACCGTTTTCGAAGCCTCTTCATGAAGCAGCAAGTGATGGTACCAAGGACAGTGGCACCAGTGACTAGGGCCACCCCT
CircID chr1:160091565|160091901
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MGGSSLVQDLGVGSPMKTRLGGSFPSPGE
Nucleotide Sequence CTGGGAGGGAGCAGCTTGGTTCAGGACTTGGGGGTGGGAAGCCCAATGAAAACAAGGTTGGGGGGTTCTTTTCCCTCACCTGGGGAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab