CircRNA Information

General Information
circRNA Basic Information
CircID chr1:160214236|160214566
Strand -
CircType exon
Host Gene ENSG00000162734.11;
Algorism CIRI2;
Sequence TCAGACTGTTGCACTCTAAACCTAGGGAGGTTGAAGAATGAGACCCTTAGGTTTTAACACGAATCCTGACACCACCATCTATAGGGTCCCAACTTGGTTATTGTAGGCAACCTTCCCTCTCTCCTTGGTGAAGAACATCCCAAGCCAGAAAGAAGTTAACTACAGTGTTTTCCTTTGCACCGATCCCCACCCCAATTCAATCCCGGAAGGGACTTACTTAGGAAACCCTTCTTTACTAGATATCCTGGCCCCCTGGGCTTGTGAACACCTCCTAGCCACATCACTACAGTACAGTGAGTGACCCCAGCCTCCTGCCTACCCCAAGATGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:160214236|160214566 hsa-miR-19a-5p 0 0 1
chr1:160214236|160214566 hsa-miR-19a-3p 0 0 1
chr1:160214236|160214566 hsa-miR-197-5p 0 0 1
chr1:160214236|160214566 hsa-miR-197-3p 0 0 1
chr1:160214236|160214566 hsa-miR-212-5p 0 0 1
chr1:160214236|160214566 hsa-miR-212-3p 0 0 1
chr1:160214236|160214566 hsa-miR-130a-5p 0 0 1
chr1:160214236|160214566 hsa-miR-130a-3p 0 0 1
chr1:160214236|160214566 hsa-miR-132-5p 0 0 1
chr1:160214236|160214566 hsa-miR-132-3p 0 0 1
chr1:160214236|160214566 hsa-miR-141-5p 0 0 1
chr1:160214236|160214566 hsa-miR-141-3p 0 0 1
chr1:160214236|160214566 hsa-miR-149-5p 0 0 1
chr1:160214236|160214566 hsa-miR-149-3p 0 0 1
chr1:160214236|160214566 hsa-miR-185-5p 0 0 1
chr1:160214236|160214566 hsa-miR-185-3p 0 0 1
chr1:160214236|160214566 hsa-miR-186-5p 0 0 1
chr1:160214236|160214566 hsa-miR-186-3p 0 0 1
chr1:160214236|160214566 hsa-miR-200a-5p 0 0 1
chr1:160214236|160214566 hsa-miR-200a-3p 0 0 1
chr1:160214236|160214566 hsa-miR-301a-5p 0 0 1
chr1:160214236|160214566 hsa-miR-301a-3p 0 0 1
chr1:160214236|160214566 hsa-miR-130b-5p 0 0 1
chr1:160214236|160214566 hsa-miR-130b-3p 0 0 1
chr1:160214236|160214566 hsa-miR-325 0 0 1
chr1:160214236|160214566 hsa-miR-384 0 0 1
chr1:160214236|160214566 hsa-miR-412-5p 0 0 1
chr1:160214236|160214566 hsa-miR-412-3p 0 0 1
chr1:160214236|160214566 hsa-miR-527 0 1 1
chr1:160214236|160214566 hsa-miR-570-5p 0 0 1
chr1:160214236|160214566 hsa-miR-570-3p 0 0 1
chr1:160214236|160214566 hsa-miR-608 1 1 1
chr1:160214236|160214566 hsa-miR-622 0 0 1
chr1:160214236|160214566 hsa-miR-635 0 0 1
chr1:160214236|160214566 hsa-miR-638 0 1 1
chr1:160214236|160214566 hsa-miR-668-5p 0 0 1
chr1:160214236|160214566 hsa-miR-668-3p 0 0 1
chr1:160214236|160214566 hsa-miR-454-5p 0 0 1
chr1:160214236|160214566 hsa-miR-454-3p 0 0 1
chr1:160214236|160214566 hsa-miR-301b-5p 0 0 1
chr1:160214236|160214566 hsa-miR-301b-3p 0 0 1
chr1:160214236|160214566 hsa-miR-940 0 0 1
chr1:160214236|160214566 hsa-miR-1182 0 0 1
chr1:160214236|160214566 hsa-miR-1183 1 1 1
chr1:160214236|160214566 hsa-miR-1208 0 0 1
chr1:160214236|160214566 hsa-miR-1303 0 0 1
chr1:160214236|160214566 hsa-miR-1250-5p 0 0 1
chr1:160214236|160214566 hsa-miR-1250-3p 0 0 1
chr1:160214236|160214566 hsa-miR-513b-5p 0 0 1
chr1:160214236|160214566 hsa-miR-513b-3p 0 0 1
chr1:160214236|160214566 hsa-miR-491-5p 0 0 1
chr1:160214236|160214566 hsa-miR-615-5p 0 0 1
chr1:160214236|160214566 hsa-miR-485-5p 0 0 1
chr1:160214236|160214566 hsa-miR-628-3p 0 0 1
chr1:160214236|160214566 hsa-miR-876-3p 0 0 1
chr1:160214236|160214566 hsa-miR-338-5p 0 0 1
chr1:160214236|160214566 hsa-miR-342-5p 0 0 1
chr1:160214236|160214566 hsa-miR-769-3p 0 0 1
chr1:160214236|160214566 hsa-miR-1302 0 0 1
chr1:160214236|160214566 hsa-miR-450b-3p 0 0 1
chr1:160214236|160214566 hsa-miR-518a-5p 0 1 1
chr1:160214236|160214566 hsa-miR-142-3p 0 0 1
chr1:160214236|160214566 hsa-miR-323-5p 0 0 1
chr1:160214236|160214566 hsa-miR-19b 0 0 1
chr1:160214236|160214566 hsa-miR-219-2-3p 0 0 1
chr1:160214236|160214566 hsa-miR-1245 0 0 1
chr1:160214236|160214566 hsa-miR-762 1 0 0
chr1:160214236|160214566 hsa-miR-665 1 0 0
chr1:160214236|160214566 hsa-miR-1293 1 0 0
chr1:160214236|160214566 hsa-miR-3122 0 1 0
chr1:160214236|160214566 hsa-miR-3132 1 0 0
chr1:160214236|160214566 hsa-miR-3135a 0 1 0
chr1:160214236|160214566 hsa-miR-3147 1 0 0
chr1:160214236|160214566 hsa-miR-4259 1 1 0
chr1:160214236|160214566 hsa-miR-4270 0 1 0
chr1:160214236|160214566 hsa-miR-4425 0 1 0
chr1:160214236|160214566 hsa-miR-4428 0 1 0
chr1:160214236|160214566 hsa-miR-4440 1 0 0
chr1:160214236|160214566 hsa-miR-4489 1 0 0
chr1:160214236|160214566 hsa-miR-4507 1 0 0
chr1:160214236|160214566 hsa-miR-4514 1 0 0
chr1:160214236|160214566 hsa-miR-1587 1 0 0
chr1:160214236|160214566 hsa-miR-4644 0 1 0
chr1:160214236|160214566 hsa-miR-4647 1 0 0
chr1:160214236|160214566 hsa-miR-4651 1 1 0
chr1:160214236|160214566 hsa-miR-4739 1 0 0
chr1:160214236|160214566 hsa-miR-5572 1 1 0
chr1:160214236|160214566 hsa-miR-5787 1 0 0
chr1:160214236|160214566 hsa-miR-6085 1 0 0
chr1:160214236|160214566 hsa-miR-6165 1 0 0
chr1:160214236|160214566 hsa-miR-6745 1 0 0
chr1:160214236|160214566 hsa-miR-6860 1 0 0
chr1:160214236|160214566 hsa-miR-7704 1 0 0
chr1:160214236|160214566 hsa-miR-12114 1 0 0
chr1:160214236|160214566 hsa-miR-92a-1-5p 1 1 0
chr1:160214236|160214566 hsa-miR-92a-2-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6747-5p 1 0 0
chr1:160214236|160214566 hsa-miR-671-5p 1 0 0
chr1:160214236|160214566 hsa-miR-124-5p 0 1 0
chr1:160214236|160214566 hsa-miR-6857-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6799-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6728-5p 1 1 0
chr1:160214236|160214566 hsa-miR-1227-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6089 1 0 0
chr1:160214236|160214566 hsa-miR-4695-5p 0 1 0
chr1:160214236|160214566 hsa-miR-4722-5p 0 1 0
chr1:160214236|160214566 hsa-miR-7160-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6890-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4474-3p 1 0 0
chr1:160214236|160214566 hsa-miR-6806-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6721-5p 1 0 0
chr1:160214236|160214566 hsa-miR-432-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6742-5p 1 0 0
chr1:160214236|160214566 hsa-miR-1292-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6796-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6732-5p 1 0 0
chr1:160214236|160214566 hsa-miR-656-5p 0 1 0
chr1:160214236|160214566 hsa-miR-6805-5p 0 1 0
chr1:160214236|160214566 hsa-miR-6798-5p 0 1 0
chr1:160214236|160214566 hsa-miR-6881-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6782-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6786-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6835-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6740-5p 1 0 0
chr1:160214236|160214566 hsa-miR-1229-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6784-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4640-5p 1 1 0
chr1:160214236|160214566 hsa-miR-1908-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6781-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6895-5p 1 0 0
chr1:160214236|160214566 hsa-let-7e-5p 1 0 0
chr1:160214236|160214566 hsa-miR-2114-5p 0 1 0
chr1:160214236|160214566 hsa-miR-625-5p 0 1 0
chr1:160214236|160214566 hsa-miR-20b-3p 0 1 0
chr1:160214236|160214566 hsa-miR-676-5p 0 1 0
chr1:160214236|160214566 hsa-miR-3680-5p 0 1 0
chr1:160214236|160214566 hsa-miR-1207-5p 1 1 0
chr1:160214236|160214566 hsa-miR-1233-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4763-3p 1 0 0
chr1:160214236|160214566 hsa-miR-6769b-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6778-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6787-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6812-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6816-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6893-5p 0 1 0
chr1:160214236|160214566 hsa-miR-6726-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6737-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6752-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6756-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6803-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6813-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6819-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6842-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6851-5p 1 1 0
chr1:160214236|160214566 hsa-miR-7110-5p 1 0 0
chr1:160214236|160214566 hsa-miR-1249-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6722-3p 1 0 0
chr1:160214236|160214566 hsa-miR-6751-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6763-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6774-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6797-5p 0 1 0
chr1:160214236|160214566 hsa-miR-6808-5p 1 1 0
chr1:160214236|160214566 hsa-miR-7111-5p 1 0 0
chr1:160214236|160214566 hsa-miR-3620-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4728-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6780b-5p 1 0 0
chr1:160214236|160214566 hsa-miR-1237-5p 1 0 0
chr1:160214236|160214566 hsa-miR-1909-3p 1 1 0
chr1:160214236|160214566 hsa-miR-328-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4649-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4725-3p 1 0 0
chr1:160214236|160214566 hsa-miR-4726-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4745-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6795-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6846-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6848-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6845-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4758-5p 1 0 0
chr1:160214236|160214566 hsa-miR-3940-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6758-5p 0 1 0
chr1:160214236|160214566 hsa-miR-6856-5p 0 1 0
chr1:160214236|160214566 hsa-miR-498-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6855-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4700-5p 1 0 0
chr1:160214236|160214566 hsa-miR-3679-5p 1 1 0
chr1:160214236|160214566 hsa-miR-4747-5p 1 1 0
chr1:160214236|160214566 hsa-miR-6766-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6785-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6762-5p 1 0 0
chr1:160214236|160214566 hsa-miR-4756-5p 1 0 0
chr1:160214236|160214566 hsa-miR-363-5p 1 0 0
chr1:160214236|160214566 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:160214236|160214566
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MHRSPPQFNPGRDLLRKPFFTRYPGPLGL
Nucleotide Sequence TTGCACCGATCCCCACCCCAATTCAATCCCGGAAGGGACTTACTTAGGAAACCCTTCTTTACTAGATATCCTGGCCCCCTGGGCTTGTGA
CircID chr1:160214236|160214566
ORF Type ORF2
Protein Length 58
Nucleotide Length 177
Protein Sequence MVKNIPSQKEVNYSVFLCTDPHPNSIPEGTYLGNPSLLDILAPWACEHLLATSLQYSE
Nucleotide Sequence TTGGTGAAGAACATCCCAAGCCAGAAAGAAGTTAACTACAGTGTTTTCCTTTGCACCGATCCCCACCCCAATTCAATCCCGGAAGGGACTTACTTAGGAAACCCTTCTTTACTAGATATCCTGGCCCCCTGGGCTTGTGAACACCTCCTAGCCACATCACTACAGTACAGTGAGTGA
CircID chr1:160214236|160214566
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MYCSDVARRCSQAQGARISSKEGFPK
Nucleotide Sequence CTGTACTGTAGTGATGTGGCTAGGAGGTGTTCACAAGCCCAGGGGGCCAGGATATCTAGTAAAGAAGGGTTTCCTAAGTAA
CircID chr1:160214236|160214566
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MWLGGVHKPRGPGYLVKKGFLSKSLPGLNWGGDRCKGKHCS
Nucleotide Sequence ATGTGGCTAGGAGGTGTTCACAAGCCCAGGGGGCCAGGATATCTAGTAAAGAAGGGTTTCCTAAGTAAGTCCCTTCCGGGATTGAATTGGGGTGGGGATCGGTGCAAAGGAAAACACTGTAGTTAA
CircID chr1:160214236|160214566
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MGCSSPRREGRLPTITKLGPYRWWCQDSC
Nucleotide Sequence TTGGGATGTTCTTCACCAAGGAGAGAGGGAAGGTTGCCTACAATAACCAAGTTGGGACCCTATAGATGGTGGTGTCAGGATTCGTGTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab