CircRNA Information

General Information
circRNA Basic Information
CircID chr1:161122180|161122383
Strand +
CircType exon
Host Gene ENSG00000158793.12;
Algorism CIRI2;
Sequence CTGGGCTCCATCATCTGTGACATCAAGTTCTCTGAGCTCACCTACCTCGATGCATTCTGGCGTGACTACATCAATGGCTCTTTATTAGAGGCACTTAAAGGTGTCTTCATCACAGACTCCCTCAAGCAAGCTGTGGGCCATGAAGCCATCAAGCTGCTGGTAAATGTAGACGAGGAGGACTATGAGCTGGGCCGACAGAAACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:161122180|161122383 hsa-let-7b-5p 0 0 1
chr1:161122180|161122383 hsa-let-7b-3p 0 0 1
chr1:161122180|161122383 hsa-let-7c-5p 0 0 1
chr1:161122180|161122383 hsa-let-7c-3p 0 0 1
chr1:161122180|161122383 hsa-let-7d-5p 0 0 1
chr1:161122180|161122383 hsa-let-7d-3p 0 0 1
chr1:161122180|161122383 hsa-let-7e-5p 0 0 1
chr1:161122180|161122383 hsa-let-7e-3p 0 0 1
chr1:161122180|161122383 hsa-miR-98-5p 0 0 1
chr1:161122180|161122383 hsa-miR-98-3p 0 0 1
chr1:161122180|161122383 hsa-let-7g-5p 0 0 1
chr1:161122180|161122383 hsa-let-7g-3p 0 0 1
chr1:161122180|161122383 hsa-let-7i-5p 0 0 1
chr1:161122180|161122383 hsa-let-7i-3p 0 0 1
chr1:161122180|161122383 hsa-miR-146a-5p 0 0 1
chr1:161122180|161122383 hsa-miR-146a-3p 0 0 1
chr1:161122180|161122383 hsa-miR-302a-5p 0 0 1
chr1:161122180|161122383 hsa-miR-302a-3p 0 0 1
chr1:161122180|161122383 hsa-miR-302b-5p 0 0 1
chr1:161122180|161122383 hsa-miR-302b-3p 0 0 1
chr1:161122180|161122383 hsa-miR-302c-5p 0 0 1
chr1:161122180|161122383 hsa-miR-302c-3p 0 0 1
chr1:161122180|161122383 hsa-miR-302d-5p 0 0 1
chr1:161122180|161122383 hsa-miR-302d-3p 0 0 1
chr1:161122180|161122383 hsa-miR-372-5p 0 0 1
chr1:161122180|161122383 hsa-miR-372-3p 0 0 1
chr1:161122180|161122383 hsa-miR-373-5p 0 0 1
chr1:161122180|161122383 hsa-miR-373-3p 0 0 1
chr1:161122180|161122383 hsa-miR-135b-5p 0 0 1
chr1:161122180|161122383 hsa-miR-135b-3p 0 0 1
chr1:161122180|161122383 hsa-miR-520e-5p 0 0 1
chr1:161122180|161122383 hsa-miR-520e-3p 0 0 1
chr1:161122180|161122383 hsa-miR-519e-5p 0 0 1
chr1:161122180|161122383 hsa-miR-519e-3p 0 0 1
chr1:161122180|161122383 hsa-miR-520b-5p 0 0 1
chr1:161122180|161122383 hsa-miR-520b-3p 0 0 1
chr1:161122180|161122383 hsa-miR-583 0 0 1
chr1:161122180|161122383 hsa-miR-634 0 0 1
chr1:161122180|161122383 hsa-miR-646 0 0 1
chr1:161122180|161122383 hsa-miR-1276 0 1 1
chr1:161122180|161122383 hsa-miR-302e 0 0 1
chr1:161122180|161122383 hsa-miR-515-3p 0 1 1
chr1:161122180|161122383 hsa-miR-520d-3p 0 0 1
chr1:161122180|161122383 hsa-miR-146b-5p 0 1 1
chr1:161122180|161122383 hsa-miR-519b-3p 0 0 1
chr1:161122180|161122383 hsa-miR-519c-3p 0 0 1
chr1:161122180|161122383 hsa-miR-520a-3p 0 0 1
chr1:161122180|161122383 hsa-miR-520c-3p 0 0 1
chr1:161122180|161122383 hsa-let-7a 0 0 1
chr1:161122180|161122383 hsa-let-7f 0 0 1
chr1:161122180|161122383 hsa-miR-135a 0 0 1
chr1:161122180|161122383 hsa-miR-519a 0 0 1
chr1:161122180|161122383 hsa-miR-3131 1 0 0
chr1:161122180|161122383 hsa-miR-4327 1 0 0
chr1:161122180|161122383 hsa-miR-3618 0 1 0
chr1:161122180|161122383 hsa-miR-3907 1 0 0
chr1:161122180|161122383 hsa-miR-4458 1 1 0
chr1:161122180|161122383 hsa-miR-4510 0 1 0
chr1:161122180|161122383 hsa-miR-4682 1 0 0
chr1:161122180|161122383 hsa-miR-5696 0 1 0
chr1:161122180|161122383 hsa-miR-6075 1 0 0
chr1:161122180|161122383 hsa-miR-6127 0 1 0
chr1:161122180|161122383 hsa-miR-6129 0 1 0
chr1:161122180|161122383 hsa-miR-12122 0 1 0
chr1:161122180|161122383 hsa-miR-4747-3p 1 0 0
chr1:161122180|161122383 hsa-miR-4665-3p 1 0 0
chr1:161122180|161122383 hsa-miR-6861-5p 1 0 0
chr1:161122180|161122383 hsa-miR-125a-3p 1 0 0
chr1:161122180|161122383 hsa-miR-6727-5p 1 0 0
chr1:161122180|161122383 hsa-miR-6748-5p 1 0 0
chr1:161122180|161122383 hsa-miR-5088-5p 1 0 0
chr1:161122180|161122383 hsa-miR-1229-5p 1 0 0
chr1:161122180|161122383 hsa-miR-6834-5p 0 1 0
chr1:161122180|161122383 hsa-miR-4743-3p 0 1 0
chr1:161122180|161122383 hsa-miR-3925-5p 1 0 0
chr1:161122180|161122383 hsa-miR-6800-5p 0 1 0
chr1:161122180|161122383 hsa-miR-6802-5p 1 0 0
chr1:161122180|161122383 hsa-miR-654-5p 0 1 0
chr1:161122180|161122383 hsa-miR-339-3p 1 0 0
chr1:161122180|161122383 hsa-miR-6818-5p 1 0 0
chr1:161122180|161122383 hsa-miR-3670 0 1 0
chr1:161122180|161122383 hsa-miR-4679 0 1 0
chr1:161122180|161122383 hsa-miR-4652-3p 1 0 0
chr1:161122180|161122383 hsa-miR-6769b-5p 1 0 0
chr1:161122180|161122383 hsa-miR-6893-5p 1 0 0
chr1:161122180|161122383 hsa-miR-6769a-5p 1 0 0
chr1:161122180|161122383 hsa-miR-4745-3p 1 0 0
chr1:161122180|161122383 hsa-miR-4723-5p 0 1 0
chr1:161122180|161122383 hsa-miR-10398-3p 1 0 0
chr1:161122180|161122383 hsa-miR-541-3p 0 1 0
chr1:161122180|161122383 hsa-miR-6829-3p 1 0 0
chr1:161122180|161122383 hsa-miR-7153-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:161122180|161122383
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence LGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVFITDSLKQAVGHEAIKLLVNVDEEDYELGRQKL
Nucleotide Sequence CTGGGCTCCATCATCTGTGACATCAAGTTCTCTGAGCTCACCTACCTCGATGCATTCTGGCGTGACTACATCAATGGCTCTTTATTAGAGGCACTTAAAGGTGTCTTCATCACAGACTCCCTCAAGCAAGCTGTGGGCCATGAAGCCATCAAGCTGCTGGTAAATGTAGACGAGGAGGACTATGAGCTGGGCCGACAGAAACTC
CircID chr1:161122180|161122383
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MSAQLIVLLVYIYQQLDGFMAHSLLEGVCDEDTFKCL
Nucleotide Sequence CTGTCGGCCCAGCTCATAGTCCTCCTCGTCTACATTTACCAGCAGCTTGATGGCTTCATGGCCCACAGCTTGCTTGAGGGAGTCTGTGATGAAGACACCTTTAAGTGCCTCTAA
CircID chr1:161122180|161122383
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MMASWPTACLRESVMKTPLSASNKEPLM
Nucleotide Sequence TTGATGGCTTCATGGCCCACAGCTTGCTTGAGGGAGTCTGTGATGAAGACACCTTTAAGTGCCTCTAATAAAGAGCCATTGATGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab