CircRNA Information

General Information
circRNA Basic Information
CircID chr1:161163996|161164282
Strand +
CircType exon
Host Gene ENSG00000143258.14;
Algorism CIRI2;
Sequence CCTTACTGTATCCCTTGTGAACCTCCACATACTGGGGCATTCTCCGACTCTAGCTCTTCTTCCTTAGTGAAAAGGTTGAAACAATCCCGCAGAGACACCTTGCCCCCAGCAAATCCTTTCTGGGGGAAAAGGGGAAGAAAGGTCAACATGTTCTGAATTTCCTTTTCCAACTCTTCTCAATCAATCCAGGCTTCAGTTCTGCTCCAGAAACCCACAGGGTTCCCGCCCACACTCTGGGGGTGGGTAGGCTTGGGTCACAGAGCCCCTGTCCTGTCCACCCCGGAATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:161163996|161164282 hsa-miR-192-5p 0 0 1
chr1:161163996|161164282 hsa-miR-192-3p 0 0 1
chr1:161163996|161164282 hsa-miR-10a-5p 0 0 1
chr1:161163996|161164282 hsa-miR-10a-3p 0 0 1
chr1:161163996|161164282 hsa-miR-10b-5p 0 0 1
chr1:161163996|161164282 hsa-miR-10b-3p 0 0 1
chr1:161163996|161164282 hsa-miR-215-5p 0 0 1
chr1:161163996|161164282 hsa-miR-215-3p 0 0 1
chr1:161163996|161164282 hsa-miR-144-5p 0 0 1
chr1:161163996|161164282 hsa-miR-144-3p 0 0 1
chr1:161163996|161164282 hsa-miR-571 0 0 1
chr1:161163996|161164282 hsa-miR-580-5p 0 0 1
chr1:161163996|161164282 hsa-miR-580-3p 0 0 1
chr1:161163996|161164282 hsa-miR-593-5p 0 0 1
chr1:161163996|161164282 hsa-miR-593-3p 0 0 1
chr1:161163996|161164282 hsa-miR-608 1 1 1
chr1:161163996|161164282 hsa-miR-629-5p 0 0 1
chr1:161163996|161164282 hsa-miR-629-3p 0 0 1
chr1:161163996|161164282 hsa-miR-637 1 1 1
chr1:161163996|161164282 hsa-miR-760 0 0 1
chr1:161163996|161164282 hsa-miR-1299 0 0 1
chr1:161163996|161164282 hsa-miR-1305 0 0 1
chr1:161163996|161164282 hsa-miR-1253 0 0 1
chr1:161163996|161164282 hsa-miR-513b-5p 0 0 1
chr1:161163996|161164282 hsa-miR-513b-3p 0 0 1
chr1:161163996|161164282 hsa-miR-299-3p 0 0 1
chr1:161163996|161164282 hsa-miR-574-5p 0 1 1
chr1:161163996|161164282 hsa-miR-361-3p 0 1 1
chr1:161163996|161164282 hsa-miR-1300 0 0 1
chr1:161163996|161164282 hsa-miR-516b 0 0 1
chr1:161163996|161164282 hsa-miR-1254 0 0 1
chr1:161163996|161164282 hsa-miR-365 0 0 1
chr1:161163996|161164282 hsa-miR-101 0 0 1
chr1:161163996|161164282 hsa-miR-3138 0 1 0
chr1:161163996|161164282 hsa-miR-3141 1 0 0
chr1:161163996|161164282 hsa-miR-3154 1 1 0
chr1:161163996|161164282 hsa-miR-3185 1 1 0
chr1:161163996|161164282 hsa-miR-4322 1 0 0
chr1:161163996|161164282 hsa-miR-4265 0 1 0
chr1:161163996|161164282 hsa-miR-3916 1 0 0
chr1:161163996|161164282 hsa-miR-4436a 0 1 0
chr1:161163996|161164282 hsa-miR-4507 1 0 0
chr1:161163996|161164282 hsa-miR-4516 1 0 0
chr1:161163996|161164282 hsa-miR-4521 0 1 0
chr1:161163996|161164282 hsa-miR-4651 0 1 0
chr1:161163996|161164282 hsa-miR-4658 1 0 0
chr1:161163996|161164282 hsa-miR-4688 1 0 0
chr1:161163996|161164282 hsa-miR-4785 0 1 0
chr1:161163996|161164282 hsa-miR-5787 1 0 0
chr1:161163996|161164282 hsa-miR-6086 1 0 0
chr1:161163996|161164282 hsa-miR-6124 0 1 0
chr1:161163996|161164282 hsa-miR-12114 1 0 0
chr1:161163996|161164282 hsa-miR-12115 1 0 0
chr1:161163996|161164282 hsa-miR-152-5p 0 1 0
chr1:161163996|161164282 hsa-miR-4731-5p 0 1 0
chr1:161163996|161164282 hsa-miR-4700-3p 0 1 0
chr1:161163996|161164282 hsa-miR-671-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6894-5p 1 0 0
chr1:161163996|161164282 hsa-miR-8071 0 1 0
chr1:161163996|161164282 hsa-miR-6089 1 0 0
chr1:161163996|161164282 hsa-miR-6880-5p 1 0 0
chr1:161163996|161164282 hsa-miR-7847-3p 1 0 0
chr1:161163996|161164282 hsa-miR-6867-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6746-5p 1 0 0
chr1:161163996|161164282 hsa-miR-4709-3p 1 0 0
chr1:161163996|161164282 hsa-miR-6820-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6759-5p 1 1 0
chr1:161163996|161164282 hsa-miR-6721-5p 0 1 0
chr1:161163996|161164282 hsa-miR-6832-3p 0 1 0
chr1:161163996|161164282 hsa-miR-1292-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6748-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6793-5p 1 1 0
chr1:161163996|161164282 hsa-miR-6827-5p 0 1 0
chr1:161163996|161164282 hsa-miR-23a-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6760-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6782-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6850-5p 1 0 0
chr1:161163996|161164282 hsa-miR-3691-3p 0 1 0
chr1:161163996|161164282 hsa-miR-1229-5p 1 0 0
chr1:161163996|161164282 hsa-miR-1228-5p 1 1 0
chr1:161163996|161164282 hsa-miR-6830-5p 1 1 0
chr1:161163996|161164282 hsa-miR-6878-5p 1 1 0
chr1:161163996|161164282 hsa-miR-516b-5p 0 1 0
chr1:161163996|161164282 hsa-miR-7112-5p 1 0 0
chr1:161163996|161164282 hsa-miR-1236-3p 0 1 0
chr1:161163996|161164282 hsa-miR-4761-5p 0 1 0
chr1:161163996|161164282 hsa-miR-5197-3p 1 1 0
chr1:161163996|161164282 hsa-miR-541-5p 0 1 0
chr1:161163996|161164282 hsa-miR-6759-3p 0 1 0
chr1:161163996|161164282 hsa-miR-6808-3p 0 1 0
chr1:161163996|161164282 hsa-miR-4763-3p 1 0 0
chr1:161163996|161164282 hsa-miR-6769b-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6787-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6812-5p 1 1 0
chr1:161163996|161164282 hsa-miR-6816-5p 1 0 0
chr1:161163996|161164282 hsa-miR-5001-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6756-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6803-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6813-5p 0 1 0
chr1:161163996|161164282 hsa-miR-6819-5p 0 1 0
chr1:161163996|161164282 hsa-miR-6851-5p 1 0 0
chr1:161163996|161164282 hsa-miR-7107-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6751-5p 1 1 0
chr1:161163996|161164282 hsa-miR-3620-5p 1 0 0
chr1:161163996|161164282 hsa-miR-10396b-5p 1 0 0
chr1:161163996|161164282 hsa-miR-1237-5p 1 0 0
chr1:161163996|161164282 hsa-miR-328-5p 1 0 0
chr1:161163996|161164282 hsa-miR-4726-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6795-5p 1 1 0
chr1:161163996|161164282 hsa-miR-6858-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6831-5p 1 0 0
chr1:161163996|161164282 hsa-miR-1238-5p 1 0 0
chr1:161163996|161164282 hsa-miR-4758-5p 1 0 0
chr1:161163996|161164282 hsa-miR-3940-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6736-5p 1 0 0
chr1:161163996|161164282 hsa-miR-4646-5p 1 0 0
chr1:161163996|161164282 hsa-miR-6733-5p 0 1 0
chr1:161163996|161164282 hsa-miR-6839-5p 0 1 0
chr1:161163996|161164282 hsa-miR-7973 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:161163996|161164282
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MKQSRRDTLPPANPFWGKRGRKVNMF
Nucleotide Sequence TTGAAACAATCCCGCAGAGACACCTTGCCCCCAGCAAATCCTTTCTGGGGGAAAAGGGGAAGAAAGGTCAACATGTTCTGA
CircID chr1:161163996|161164282
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MLQKPTGFPPTLWGWVGLGHRAPVLSTPE
Nucleotide Sequence CTGCTCCAGAAACCCACAGGGTTCCCGCCCACACTCTGGGGGTGGGTAGGCTTGGGTCACAGAGCCCCTGTCCTGTCCACCCCGGAA
CircID chr1:161163996|161164282
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MGEKGKKGQHVLNFLFQLFSINPGFSSAPETHRVPAHTLGVGRLGSQSPCPVHPGI
Nucleotide Sequence CTGGGGGAAAAGGGGAAGAAAGGTCAACATGTTCTGAATTTCCTTTTCCAACTCTTCTCAATCAATCCAGGCTTCAGTTCTGCTCCAGAAACCCACAGGGTTCCCGCCCACACTCTGGGGGTGGGTAGGCTTGGGTCACAGAGCCCCTGTCCTGTCCACCCCGGAATC
CircID chr1:161163996|161164282
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MEKEIQNMLTFLPLFPQKGFAGGKVSLRDCFNLFTKEEELESENAPVCGGSQGIQ
Nucleotide Sequence TTGGAAAAGGAAATTCAGAACATGTTGACCTTTCTTCCCCTTTTCCCCCAGAAAGGATTTGCTGGGGGCAAGGTGTCTCTGCGGGATTGTTTCAACCTTTTCACTAAGGAAGAAGAGCTAGAGTCGGAGAATGCCCCAGTATGTGGAGGTTCACAAGGGATACAGTAA
CircID chr1:161163996|161164282
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MRRVGKGNSEHVDLSSPFPPERICWGQGVSAGLFQPFH
Nucleotide Sequence TTGAGAAGAGTTGGAAAAGGAAATTCAGAACATGTTGACCTTTCTTCCCCTTTTCCCCCAGAAAGGATTTGCTGGGGGCAAGGTGTCTCTGCGGGATTGTTTCAACCTTTTCACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab