CircRNA Information

General Information
circRNA Basic Information
CircID chr1:161210591|161212380
Strand +
CircType exon
Host Gene ENSG00000158864.11;
Algorism CIRI2;
Sequence TGGCGCATCTCCTCCACCCGGCACAGGTACCTATCATAGCAGTCCCCTCGAGAACCAACAGGAACATCAAACTCAACCTGGTCGTAAACATCATAGGGCTGGGTCTTCCGCAGGTCCCACTGGATGCCTGAGCCCCGAAGCATCACTCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:161210591|161212380 hsa-miR-122-5p 0 0 1
chr1:161210591|161212380 hsa-miR-122-3p 0 0 1
chr1:161210591|161212380 hsa-miR-492 0 1 1
chr1:161210591|161212380 hsa-miR-659-5p 0 0 1
chr1:161210591|161212380 hsa-miR-659-3p 0 0 1
chr1:161210591|161212380 hsa-miR-765 0 0 1
chr1:161210591|161212380 hsa-miR-1272 0 0 1
chr1:161210591|161212380 hsa-miR-1288-5p 0 0 1
chr1:161210591|161212380 hsa-miR-1288-3p 0 0 1
chr1:161210591|161212380 hsa-miR-1322 0 0 1
chr1:161210591|161212380 hsa-miR-1825 0 0 1
chr1:161210591|161212380 hsa-miR-199a-5p 0 0 1
chr1:161210591|161212380 hsa-miR-516a-5p 0 0 1
chr1:161210591|161212380 hsa-miR-199b-5p 0 0 1
chr1:161210591|161212380 hsa-miR-7 0 0 1
chr1:161210591|161212380 hsa-miR-24 0 0 1
chr1:161210591|161212380 hsa-miR-638 1 0 0
chr1:161210591|161212380 hsa-miR-762 1 0 0
chr1:161210591|161212380 hsa-miR-4437 0 1 0
chr1:161210591|161212380 hsa-miR-4447 1 0 0
chr1:161210591|161212380 hsa-miR-4450 1 0 0
chr1:161210591|161212380 hsa-miR-4525 1 0 0
chr1:161210591|161212380 hsa-miR-4648 1 0 0
chr1:161210591|161212380 hsa-miR-4656 1 0 0
chr1:161210591|161212380 hsa-miR-4669 1 0 0
chr1:161210591|161212380 hsa-miR-4689 1 0 0
chr1:161210591|161212380 hsa-miR-4784 0 1 0
chr1:161210591|161212380 hsa-miR-5194 1 0 0
chr1:161210591|161212380 hsa-miR-5698 1 0 0
chr1:161210591|161212380 hsa-miR-5705 1 1 0
chr1:161210591|161212380 hsa-miR-6745 0 1 0
chr1:161210591|161212380 hsa-miR-7974 1 0 0
chr1:161210591|161212380 hsa-miR-8052 1 0 0
chr1:161210591|161212380 hsa-miR-12115 1 0 0
chr1:161210591|161212380 hsa-miR-7-5p 0 1 0
chr1:161210591|161212380 hsa-miR-6734-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6857-5p 1 0 0
chr1:161210591|161212380 hsa-miR-139-3p 1 0 0
chr1:161210591|161212380 hsa-miR-1236-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6880-5p 0 1 0
chr1:161210591|161212380 hsa-miR-24-3p 0 1 0
chr1:161210591|161212380 hsa-miR-6727-5p 1 1 0
chr1:161210591|161212380 hsa-miR-5589-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6783-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6793-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6796-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6829-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6805-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6798-5p 1 0 0
chr1:161210591|161212380 hsa-miR-3150b-3p 0 1 0
chr1:161210591|161212380 hsa-miR-6850-5p 0 1 0
chr1:161210591|161212380 hsa-miR-3934-3p 1 1 0
chr1:161210591|161212380 hsa-miR-5088-5p 1 1 0
chr1:161210591|161212380 hsa-miR-1226-5p 1 0 0
chr1:161210591|161212380 hsa-miR-7854-3p 1 0 0
chr1:161210591|161212380 hsa-miR-194-3p 0 1 0
chr1:161210591|161212380 hsa-miR-3191-3p 1 0 0
chr1:161210591|161212380 hsa-miR-1225-5p 1 0 0
chr1:161210591|161212380 hsa-miR-4652-5p 1 1 0
chr1:161210591|161212380 hsa-miR-744-5p 1 0 0
chr1:161210591|161212380 hsa-miR-4750-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6856-3p 0 1 0
chr1:161210591|161212380 hsa-miR-1914-5p 0 1 0
chr1:161210591|161212380 hsa-miR-4283 0 1 0
chr1:161210591|161212380 hsa-miR-6769b-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6775-5p 1 0 0
chr1:161210591|161212380 hsa-miR-11181-3p 0 1 0
chr1:161210591|161212380 hsa-miR-10396a-5p 1 0 0
chr1:161210591|161212380 hsa-miR-1237-5p 1 0 0
chr1:161210591|161212380 hsa-miR-4745-5p 1 0 0
chr1:161210591|161212380 hsa-miR-4749-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6794-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6795-5p 1 1 0
chr1:161210591|161212380 hsa-miR-6846-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6848-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6887-5p 1 0 0
chr1:161210591|161212380 hsa-miR-3199 1 1 0
chr1:161210591|161212380 hsa-miR-365a-5p 1 0 0
chr1:161210591|161212380 hsa-miR-6511b-5p 1 0 0
chr1:161210591|161212380 hsa-miR-1914-3p 1 0 0
chr1:161210591|161212380 hsa-miR-4665-5p 1 0 0
chr1:161210591|161212380 hsa-miR-363-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:161210591|161212380
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMR
Nucleotide Sequence ATGCTTCGGGGCTCAGGCATCCAGTGGGACCTGCGGAAGACCCAGCCCTATGATGTTTACGACCAGGTTGAGTTTGATGTTCCTGTTGGTTCTCGAGGGGACTGCTATGATAGGTACCTGTGCCGGGTGGAGGAGATGCGC
CircID chr1:161210591|161212380
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MMFTTRLSLMFLLVLEGTAMIGTCAGWRRCA
Nucleotide Sequence ATGATGTTTACGACCAGGTTGAGTTTGATGTTCCTGTTGGTTCTCGAGGGGACTGCTATGATAGGTACCTGTGCCGGGTGGAGGAGATGCGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab