CircRNA Information

General Information
circRNA Basic Information
CircID chr1:161229839|161229983
Strand +
CircType exon
Host Gene ENSG00000158882.11;
Algorism CIRI2;
Sequence TCCCAACTGCCTTATTTCCCTCCTGTTTTCCTGGCAACCCCACTACTTCCTCCAAAGGTTTCTGTATGCGAAGTTGCTAGGCCTGCTGGCTGAGCTCCGGAGCATTAATGAGGCCTACGGGTACCAAATCCAGCACATCCAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:161229839|161229983 hsa-miR-99a-5p 0 0 1
chr1:161229839|161229983 hsa-miR-99a-3p 0 0 1
chr1:161229839|161229983 hsa-miR-100-5p 0 0 1
chr1:161229839|161229983 hsa-miR-100-3p 0 0 1
chr1:161229839|161229983 hsa-miR-214-5p 0 0 1
chr1:161229839|161229983 hsa-miR-214-3p 0 0 1
chr1:161229839|161229983 hsa-miR-155-5p 0 0 1
chr1:161229839|161229983 hsa-miR-155-3p 0 0 1
chr1:161229839|161229983 hsa-miR-99b-5p 0 0 1
chr1:161229839|161229983 hsa-miR-99b-3p 0 0 1
chr1:161229839|161229983 hsa-miR-506-5p 0 0 1
chr1:161229839|161229983 hsa-miR-506-3p 0 0 1
chr1:161229839|161229983 hsa-miR-570-5p 0 0 1
chr1:161229839|161229983 hsa-miR-570-3p 0 0 1
chr1:161229839|161229983 hsa-miR-765 1 0 1
chr1:161229839|161229983 hsa-miR-891b 0 0 1
chr1:161229839|161229983 hsa-miR-1202 1 0 1
chr1:161229839|161229983 hsa-miR-1203 0 0 1
chr1:161229839|161229983 hsa-miR-1287-5p 0 0 1
chr1:161229839|161229983 hsa-miR-1287-3p 0 0 1
chr1:161229839|161229983 hsa-miR-1290 0 0 1
chr1:161229839|161229983 hsa-miR-1263 0 0 1
chr1:161229839|161229983 hsa-miR-876-5p 0 0 1
chr1:161229839|161229983 hsa-miR-124 0 0 1
chr1:161229839|161229983 hsa-miR-768-5p 0 0 1
chr1:161229839|161229983 hsa-miR-661 1 0 0
chr1:161229839|161229983 hsa-miR-665 1 0 0
chr1:161229839|161229983 hsa-miR-4306 1 0 0
chr1:161229839|161229983 hsa-miR-4292 1 0 0
chr1:161229839|161229983 hsa-miR-4476 1 0 0
chr1:161229839|161229983 hsa-miR-4510 1 0 0
chr1:161229839|161229983 hsa-miR-4739 1 0 0
chr1:161229839|161229983 hsa-miR-4741 1 0 0
chr1:161229839|161229983 hsa-miR-4779 1 0 0
chr1:161229839|161229983 hsa-miR-6090 1 0 0
chr1:161229839|161229983 hsa-miR-6127 1 0 0
chr1:161229839|161229983 hsa-miR-6129 1 0 0
chr1:161229839|161229983 hsa-miR-6133 1 0 0
chr1:161229839|161229983 hsa-miR-6165 1 0 0
chr1:161229839|161229983 hsa-miR-6734-5p 1 0 0
chr1:161229839|161229983 hsa-miR-4433a-3p 1 0 0
chr1:161229839|161229983 hsa-miR-6873-5p 1 0 0
chr1:161229839|161229983 hsa-miR-4695-5p 1 0 0
chr1:161229839|161229983 hsa-miR-4722-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6798-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6782-5p 1 0 0
chr1:161229839|161229983 hsa-miR-5006-5p 1 0 0
chr1:161229839|161229983 hsa-miR-185-5p 1 0 0
chr1:161229839|161229983 hsa-miR-5004-3p 1 0 0
chr1:161229839|161229983 hsa-miR-1908-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6771-5p 1 0 0
chr1:161229839|161229983 hsa-miR-149-3p 1 0 0
chr1:161229839|161229983 hsa-miR-3162-5p 1 0 0
chr1:161229839|161229983 hsa-miR-4773 1 0 0
chr1:161229839|161229983 hsa-miR-6767-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6789-3p 1 0 0
chr1:161229839|161229983 hsa-miR-1207-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6812-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6756-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6851-5p 1 0 0
chr1:161229839|161229983 hsa-miR-11181-3p 1 0 0
chr1:161229839|161229983 hsa-miR-1249-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6797-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6875-5p 1 0 0
chr1:161229839|161229983 hsa-miR-4728-5p 1 0 0
chr1:161229839|161229983 hsa-miR-10526-3p 1 0 0
chr1:161229839|161229983 hsa-miR-328-5p 1 0 0
chr1:161229839|161229983 hsa-miR-4745-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6738-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6795-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6883-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6887-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6511a-5p 1 0 0
chr1:161229839|161229983 hsa-miR-3116 1 0 0
chr1:161229839|161229983 hsa-miR-6876-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6891-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6785-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6791-5p 1 0 0
chr1:161229839|161229983 hsa-miR-6504-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:161229839|161229983
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPYFPPVFLATPLLPPKVSVCEVARPAG
Nucleotide Sequence CTGCCTTATTTCCCTCCTGTTTTCCTGGCAACCCCACTACTTCCTCCAAAGGTTTCTGTATGCGAAGTTGCTAGGCCTGCTGGCTGA
CircID chr1:161229839|161229983
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MFSWQPHYFLQRFLYAKLLGLLAELRSINEAYGYQIQHIQG
Nucleotide Sequence CTGTTTTCCTGGCAACCCCACTACTTCCTCCAAAGGTTTCTGTATGCGAAGTTGCTAGGCCTGCTGGCTGAGCTCCGGAGCATTAATGAGGCCTACGGGTACCAAATCCAGCACATCCAGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab