CircRNA Information

General Information
circRNA Basic Information
CircID chr1:162523601|162523822
Strand +
CircType exon
Host Gene ENSG00000152332.14;
Algorism CIRI2;
Sequence CTTTCTTAACTACCTTGCAGTCAAAAGCCAAACTACCTGGGATGCTGCTCCTCTAGTTTGTCTTCAGCTAAGGATAGAGGCAAAGAATGAGGGAAGGGGAGGAAAAAGGGAGCAGGGATACGAGAAACAGAAAGGAAGAAAAAAGAATCCTTTTATTTTCCACCCTCTCTTCGCCCATTTTTTTTCTTTTCCCTTCACTGTACATCTAATTCTTTTGACCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:162523601|162523822 hsa-miR-15a-5p 0 0 1
chr1:162523601|162523822 hsa-miR-15a-3p 0 0 1
chr1:162523601|162523822 hsa-miR-107 0 0 1
chr1:162523601|162523822 hsa-miR-204-5p 0 0 1
chr1:162523601|162523822 hsa-miR-204-3p 0 0 1
chr1:162523601|162523822 hsa-miR-211-5p 0 0 1
chr1:162523601|162523822 hsa-miR-211-3p 0 0 1
chr1:162523601|162523822 hsa-miR-15b-5p 0 0 1
chr1:162523601|162523822 hsa-miR-15b-3p 0 0 1
chr1:162523601|162523822 hsa-miR-186-5p 0 0 1
chr1:162523601|162523822 hsa-miR-186-3p 0 0 1
chr1:162523601|162523822 hsa-miR-195-5p 0 0 1
chr1:162523601|162523822 hsa-miR-195-3p 0 0 1
chr1:162523601|162523822 hsa-miR-196b-5p 0 0 1
chr1:162523601|162523822 hsa-miR-196b-3p 0 0 1
chr1:162523601|162523822 hsa-miR-424-5p 0 0 1
chr1:162523601|162523822 hsa-miR-424-3p 0 0 1
chr1:162523601|162523822 hsa-miR-497-5p 0 0 1
chr1:162523601|162523822 hsa-miR-497-3p 0 0 1
chr1:162523601|162523822 hsa-miR-877-5p 0 0 1
chr1:162523601|162523822 hsa-miR-877-3p 0 0 1
chr1:162523601|162523822 hsa-miR-943 0 0 1
chr1:162523601|162523822 hsa-miR-1238-5p 0 0 1
chr1:162523601|162523822 hsa-miR-1238-3p 0 0 1
chr1:162523601|162523822 hsa-miR-324-5p 0 0 1
chr1:162523601|162523822 hsa-miR-501-5p 0 0 1
chr1:162523601|162523822 hsa-miR-188-5p 0 0 1
chr1:162523601|162523822 hsa-miR-576-3p 0 0 1
chr1:162523601|162523822 hsa-miR-362-5p 0 0 1
chr1:162523601|162523822 hsa-miR-642 0 0 1
chr1:162523601|162523822 hsa-miR-103 0 0 1
chr1:162523601|162523822 hsa-miR-16 0 0 1
chr1:162523601|162523822 hsa-miR-196a 0 0 1
chr1:162523601|162523822 hsa-miR-3138 1 0 0
chr1:162523601|162523822 hsa-miR-5739 0 1 0
chr1:162523601|162523822 hsa-miR-6124 0 1 0
chr1:162523601|162523822 hsa-miR-6745 0 1 0
chr1:162523601|162523822 hsa-miR-6749-3p 1 1 0
chr1:162523601|162523822 hsa-miR-6734-5p 1 0 0
chr1:162523601|162523822 hsa-miR-6833-5p 0 1 0
chr1:162523601|162523822 hsa-miR-7847-3p 1 0 0
chr1:162523601|162523822 hsa-miR-197-5p 1 0 0
chr1:162523601|162523822 hsa-miR-6832-3p 0 1 0
chr1:162523601|162523822 hsa-miR-6845-3p 1 0 0
chr1:162523601|162523822 hsa-miR-6728-3p 1 0 0
chr1:162523601|162523822 hsa-miR-7113-3p 1 0 0
chr1:162523601|162523822 hsa-miR-3202 1 0 0
chr1:162523601|162523822 hsa-miR-7111-3p 1 1 0
chr1:162523601|162523822 hsa-miR-4668-5p 0 1 0
chr1:162523601|162523822 hsa-miR-6864-5p 0 1 0
chr1:162523601|162523822 hsa-miR-1236-3p 1 0 0
chr1:162523601|162523822 hsa-miR-7106-3p 1 1 0
chr1:162523601|162523822 hsa-miR-6828-3p 0 1 0
chr1:162523601|162523822 hsa-miR-6752-3p 1 0 0
chr1:162523601|162523822 hsa-miR-6758-3p 1 1 0
chr1:162523601|162523822 hsa-miR-3140-3p 0 1 0
chr1:162523601|162523822 hsa-miR-541-5p 0 1 0
chr1:162523601|162523822 hsa-miR-520g-5p 0 1 0
chr1:162523601|162523822 hsa-miR-6734-3p 1 1 0
chr1:162523601|162523822 hsa-miR-196a-5p 0 1 0
chr1:162523601|162523822 hsa-miR-3152-5p 0 1 0
chr1:162523601|162523822 hsa-miR-1343-5p 1 1 0
chr1:162523601|162523822 hsa-miR-1249-5p 1 0 0
chr1:162523601|162523822 hsa-miR-6788-5p 1 0 0
chr1:162523601|162523822 hsa-miR-6797-5p 1 0 0
chr1:162523601|162523822 hsa-miR-4685-3p 0 1 0
chr1:162523601|162523822 hsa-miR-6866-3p 0 1 0
chr1:162523601|162523822 hsa-miR-5196-5p 1 0 0
chr1:162523601|162523822 hsa-miR-4726-5p 1 0 0
chr1:162523601|162523822 hsa-miR-6738-5p 1 0 0
chr1:162523601|162523822 hsa-miR-6739-5p 0 1 0
chr1:162523601|162523822 hsa-miR-6758-5p 0 1 0
chr1:162523601|162523822 hsa-miR-5008-3p 1 0 0
chr1:162523601|162523822 hsa-miR-6756-3p 0 1 0
chr1:162523601|162523822 hsa-miR-6810-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:162523601|162523822
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MREGEEKGSRDTRNRKEEKRILLFSTLSSPIFFLFPSLYI
Nucleotide Sequence ATGAGGGAAGGGGAGGAAAAAGGGAGCAGGGATACGAGAAACAGAAAGGAAGAAAAAAGAATCCTTTTATTTTCCACCCTCTCTTCGCCCATTTTTTTTCTTTTCCCTTCACTGTACATCTAA
CircID chr1:162523601|162523822
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MYSEGKRKKMGEERVENKRILFSSFLFLVSLLPFSSPSLILCLYP
Nucleotide Sequence ATGTACAGTGAAGGGAAAAGAAAAAAAATGGGCGAAGAGAGGGTGGAAAATAAAAGGATTCTTTTTTCTTCCTTTCTGTTTCTCGTATCCCTGCTCCCTTTTTCCTCCCCTTCCCTCATTCTTTGCCTCTATCCTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab