CircRNA Information

General Information
circRNA Basic Information
CircID chr1:1636682|1637004
Strand -
CircType exon
Host Gene ENSG00000248333.6;
Algorism CIRI2;
Sequence CTTGAACACCTTGTTGATCTGATCGATTTCTGACTTCCCGGGGAACAGAGGCTTCTGAGTCAGCAGCTCCCCGAAGATGCAACCCACTGACCACATGTCCACGGCCGTGGAGTATTCCTAAGAGGTCAGGAGAGGTGTTCAGGAGGGCCAGTGCCCGCGAAGCTGTGGGAGGCTGCGTGGGGGACAGGGGAGGCACTCAGACGCCCAGGACTCACCTTGGCACCAAGCAGCAGCTCTGGGGCGCGGTACCACAGGGTCACCACGACCGGGGTGTAGGCCTTCAGAGGGGATCCGTACTCCCGCGCCAGCCCGAAGTCACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:1636682|1637004 hsa-miR-10a-5p 0 0 1
chr1:1636682|1637004 hsa-miR-10a-3p 0 0 1
chr1:1636682|1637004 hsa-miR-10b-5p 0 0 1
chr1:1636682|1637004 hsa-miR-10b-3p 0 0 1
chr1:1636682|1637004 hsa-miR-383-5p 0 0 1
chr1:1636682|1637004 hsa-miR-383-3p 0 0 1
chr1:1636682|1637004 hsa-miR-328-5p 0 0 1
chr1:1636682|1637004 hsa-miR-328-3p 0 0 1
chr1:1636682|1637004 hsa-miR-345-5p 0 0 1
chr1:1636682|1637004 hsa-miR-345-3p 0 0 1
chr1:1636682|1637004 hsa-miR-193b-5p 0 0 1
chr1:1636682|1637004 hsa-miR-193b-3p 0 0 1
chr1:1636682|1637004 hsa-miR-519e-5p 0 0 1
chr1:1636682|1637004 hsa-miR-519e-3p 0 0 1
chr1:1636682|1637004 hsa-miR-504-5p 0 0 1
chr1:1636682|1637004 hsa-miR-504-3p 0 0 1
chr1:1636682|1637004 hsa-miR-558 0 1 1
chr1:1636682|1637004 hsa-miR-585-5p 0 0 1
chr1:1636682|1637004 hsa-miR-585-3p 0 0 1
chr1:1636682|1637004 hsa-miR-617 0 0 1
chr1:1636682|1637004 hsa-miR-624-5p 0 0 1
chr1:1636682|1637004 hsa-miR-624-3p 0 0 1
chr1:1636682|1637004 hsa-miR-920 0 1 1
chr1:1636682|1637004 hsa-miR-939-5p 0 0 1
chr1:1636682|1637004 hsa-miR-939-3p 0 0 1
chr1:1636682|1637004 hsa-miR-1291 0 0 1
chr1:1636682|1637004 hsa-miR-1262 0 1 1
chr1:1636682|1637004 hsa-miR-1263 0 0 1
chr1:1636682|1637004 hsa-miR-127-3p 0 1 1
chr1:1636682|1637004 hsa-miR-532-3p 0 0 1
chr1:1636682|1637004 hsa-miR-542-5p 0 0 1
chr1:1636682|1637004 hsa-miR-339-5p 1 1 1
chr1:1636682|1637004 hsa-miR-508-5p 0 0 1
chr1:1636682|1637004 hsa-miR-361-3p 0 0 1
chr1:1636682|1637004 hsa-miR-331-3p 0 0 1
chr1:1636682|1637004 hsa-miR-188-3p 0 0 1
chr1:1636682|1637004 hsa-miR-628-5p 0 0 1
chr1:1636682|1637004 hsa-miR-515-3p 0 1 1
chr1:1636682|1637004 hsa-miR-193a-3p 0 0 1
chr1:1636682|1637004 hsa-miR-1268 0 0 1
chr1:1636682|1637004 hsa-miR-636 1 0 0
chr1:1636682|1637004 hsa-miR-762 0 1 0
chr1:1636682|1637004 hsa-miR-663b 1 0 0
chr1:1636682|1637004 hsa-miR-1469 1 0 0
chr1:1636682|1637004 hsa-miR-1913 1 0 0
chr1:1636682|1637004 hsa-miR-3138 1 1 0
chr1:1636682|1637004 hsa-miR-4300 0 1 0
chr1:1636682|1637004 hsa-miR-4440 1 1 0
chr1:1636682|1637004 hsa-miR-3689f 1 0 0
chr1:1636682|1637004 hsa-miR-4479 1 0 0
chr1:1636682|1637004 hsa-miR-4492 0 1 0
chr1:1636682|1637004 hsa-miR-4493 0 1 0
chr1:1636682|1637004 hsa-miR-4498 1 1 0
chr1:1636682|1637004 hsa-miR-4657 1 0 0
chr1:1636682|1637004 hsa-miR-4767 1 0 0
chr1:1636682|1637004 hsa-miR-5100 0 1 0
chr1:1636682|1637004 hsa-miR-5705 1 0 0
chr1:1636682|1637004 hsa-miR-6071 1 0 0
chr1:1636682|1637004 hsa-miR-93-3p 0 1 0
chr1:1636682|1637004 hsa-miR-1247-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6836-3p 1 1 0
chr1:1636682|1637004 hsa-miR-6825-5p 1 0 0
chr1:1636682|1637004 hsa-miR-1233-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6727-5p 1 0 0
chr1:1636682|1637004 hsa-miR-3189-5p 1 0 0
chr1:1636682|1637004 hsa-miR-5589-5p 1 0 0
chr1:1636682|1637004 hsa-miR-4728-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6748-5p 0 1 0
chr1:1636682|1637004 hsa-miR-6793-5p 1 1 0
chr1:1636682|1637004 hsa-miR-185-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6829-5p 1 0 0
chr1:1636682|1637004 hsa-miR-6882-3p 1 0 0
chr1:1636682|1637004 hsa-miR-7109-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6786-5p 1 0 0
chr1:1636682|1637004 hsa-miR-1909-5p 1 1 0
chr1:1636682|1637004 hsa-miR-3186-5p 1 0 0
chr1:1636682|1637004 hsa-miR-3944-3p 1 1 0
chr1:1636682|1637004 hsa-miR-3677-3p 1 1 0
chr1:1636682|1637004 hsa-miR-4783-5p 1 0 0
chr1:1636682|1637004 hsa-miR-7111-3p 1 0 0
chr1:1636682|1637004 hsa-miR-324-5p 1 0 0
chr1:1636682|1637004 hsa-miR-4638-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6742-3p 1 0 0
chr1:1636682|1637004 hsa-miR-146b-3p 0 1 0
chr1:1636682|1637004 hsa-miR-194-3p 1 0 0
chr1:1636682|1637004 hsa-miR-4707-5p 1 0 0
chr1:1636682|1637004 hsa-miR-1180-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6778-3p 0 1 0
chr1:1636682|1637004 hsa-miR-2276-5p 0 1 0
chr1:1636682|1637004 hsa-miR-4749-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6859-3p 1 0 0
chr1:1636682|1637004 hsa-miR-1292-3p 0 1 0
chr1:1636682|1637004 hsa-miR-493-3p 1 0 0
chr1:1636682|1637004 hsa-miR-1227-3p 1 0 0
chr1:1636682|1637004 hsa-miR-3124-5p 0 1 0
chr1:1636682|1637004 hsa-miR-6748-3p 1 1 0
chr1:1636682|1637004 hsa-miR-5587-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6838-3p 0 1 0
chr1:1636682|1637004 hsa-miR-7159-5p 0 1 0
chr1:1636682|1637004 hsa-miR-6761-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6800-3p 0 1 0
chr1:1636682|1637004 hsa-miR-652-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6769b-5p 1 0 0
chr1:1636682|1637004 hsa-miR-1343-5p 1 0 0
chr1:1636682|1637004 hsa-miR-5001-5p 0 1 0
chr1:1636682|1637004 hsa-miR-6726-5p 0 1 0
chr1:1636682|1637004 hsa-miR-6774-5p 1 0 0
chr1:1636682|1637004 hsa-miR-3127-3p 1 0 0
chr1:1636682|1637004 hsa-miR-3620-5p 1 0 0
chr1:1636682|1637004 hsa-miR-4685-5p 1 1 0
chr1:1636682|1637004 hsa-miR-4701-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6777-5p 1 1 0
chr1:1636682|1637004 hsa-miR-6889-5p 1 1 0
chr1:1636682|1637004 hsa-miR-4758-5p 1 0 0
chr1:1636682|1637004 hsa-miR-3085-5p 0 1 0
chr1:1636682|1637004 hsa-miR-3940-5p 1 0 0
chr1:1636682|1637004 hsa-miR-6791-3p 1 1 0
chr1:1636682|1637004 hsa-miR-6877-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6862-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6810-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6829-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6718-5p 1 0 0
chr1:1636682|1637004 hsa-miR-6819-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6823-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6744-3p 1 0 0
chr1:1636682|1637004 hsa-miR-6783-3p 1 1 0
chr1:1636682|1637004 hsa-miR-33b-3p 0 1 0
chr1:1636682|1637004 hsa-miR-6781-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:1636682|1637004
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MWEAAWGTGEALRRPGLTLAPSSSSGARYHRVTTTGV
Nucleotide Sequence CTGTGGGAGGCTGCGTGGGGGACAGGGGAGGCACTCAGACGCCCAGGACTCACCTTGGCACCAAGCAGCAGCTCTGGGGCGCGGTACCACAGGGTCACCACGACCGGGGTGTAG
CircID chr1:1636682|1637004
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MRGGQGRHSDAQDSPWHQAAALGRGTTGSPRPGCRPSEGIRTPAPARSHP
Nucleotide Sequence CTGCGTGGGGGACAGGGGAGGCACTCAGACGCCCAGGACTCACCTTGGCACCAAGCAGCAGCTCTGGGGCGCGGTACCACAGGGTCACCACGACCGGGGTGTAGGCCTTCAGAGGGGATCCGTACTCCCGCGCCAGCCCGAAGTCACCCA
CircID chr1:1636682|1637004
ORF Type ORF3
Protein Length 98
Nucleotide Length 294
Protein Sequence MTSRGTEASESAAPRRCNPLTTCPRPWSIPKRSGEVFRRASAREAVGGCVGDRGGTQTPRTHLGTKQQLWGAVPQGHHDRGVGLQRGSVLPRQPEVTH
Nucleotide Sequence CTGACTTCCCGGGGAACAGAGGCTTCTGAGTCAGCAGCTCCCCGAAGATGCAACCCACTGACCACATGTCCACGGCCGTGGAGTATTCCTAAGAGGTCAGGAGAGGTGTTCAGGAGGGCCAGTGCCCGCGAAGCTGTGGGAGGCTGCGTGGGGGACAGGGGAGGCACTCAGACGCCCAGGACTCACCTTGGCACCAAGCAGCAGCTCTGGGGCGCGGTACCACAGGGTCACCACGACCGGGGTGTAGGCCTTCAGAGGGGATCCGTACTCCCGCGCCAGCCCGAAGTCACCCAC
CircID chr1:1636682|1637004
ORF Type ORF4
Protein Length 60
Nucleotide Length 183
Protein Sequence MAREYGSPLKAYTPVVVTLWYRAPELLLGAKVSPGRLSASPVPHAASHSFAGTGPPEHLS
Nucleotide Sequence CTGGCGCGGGAGTACGGATCCCCTCTGAAGGCCTACACCCCGGTCGTGGTGACCCTGTGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGTGAGTCCTGGGCGTCTGAGTGCCTCCCCTGTCCCCCACGCAGCCTCCCACAGCTTCGCGGGCACTGGCCCTCCTGAACACCTCTCCTGA
CircID chr1:1636682|1637004
ORF Type ORF5
Protein Length 62
Nucleotide Length 186
Protein Sequence MSPTQPPTASRALALLNTSPDLLGILHGRGHVVSGLHLRGAADSEASVPREVRNRSDQQGVQ
Nucleotide Sequence CTGTCCCCCACGCAGCCTCCCACAGCTTCGCGGGCACTGGCCCTCCTGAACACCTCTCCTGACCTCTTAGGAATACTCCACGGCCGTGGACATGTGGTCAGTGGGTTGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAAGTCAGAAATCGATCAGATCAACAAGGTGTTCAA
CircID chr1:1636682|1637004
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MWSVGCIFGELLTQKPLFPGKSEIDQINKVFK
Nucleotide Sequence ATGTGGTCAGTGGGTTGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAAGTCAGAAATCGATCAGATCAACAAGGTGTTCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab