CircRNA Information

General Information
circRNA Basic Information
CircID chr1:16396917|16397193
Strand +
CircType exon
Host Gene ENSG00000055070.15;
Algorism CIRI2;
Sequence CCACCAGCCAGCCTTTACTTTGGCCTCCCACTAGAGGGTAGTGGGGCAAGAACAGGTGGTCCCAATGGCTGGGCAATCAGCACTTCTGGCGTTCCCACCTGGACTACCTCTATACCCTTCTCCAATTAAAAGGAAAGTCTCACTTTGGGCGGGAAACCACTATTACATAAGGGATGGACACTACACATTTAGAATGTGGACACTTGGTTAGGGCAGTGGAACTATAAAGATAGCAGCCAGTTTTCTTCCTTGCCTTCTCCTGAAGGTAATCCTCCCT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:16396917|16397193 hsa-let-7b-5p 0 0 1
chr1:16396917|16397193 hsa-let-7b-3p 0 0 1
chr1:16396917|16397193 hsa-let-7c-5p 0 0 1
chr1:16396917|16397193 hsa-let-7c-3p 0 0 1
chr1:16396917|16397193 hsa-let-7d-5p 0 0 1
chr1:16396917|16397193 hsa-let-7d-3p 0 0 1
chr1:16396917|16397193 hsa-let-7e-5p 0 0 1
chr1:16396917|16397193 hsa-let-7e-3p 0 0 1
chr1:16396917|16397193 hsa-miR-98-5p 0 0 1
chr1:16396917|16397193 hsa-miR-98-3p 0 0 1
chr1:16396917|16397193 hsa-let-7g-5p 0 0 1
chr1:16396917|16397193 hsa-let-7g-3p 0 0 1
chr1:16396917|16397193 hsa-let-7i-5p 0 0 1
chr1:16396917|16397193 hsa-let-7i-3p 0 0 1
chr1:16396917|16397193 hsa-miR-302a-5p 0 0 1
chr1:16396917|16397193 hsa-miR-302a-3p 0 0 1
chr1:16396917|16397193 hsa-miR-302b-5p 0 0 1
chr1:16396917|16397193 hsa-miR-302b-3p 0 0 1
chr1:16396917|16397193 hsa-miR-302c-5p 0 0 1
chr1:16396917|16397193 hsa-miR-302c-3p 0 0 1
chr1:16396917|16397193 hsa-miR-302d-5p 0 0 1
chr1:16396917|16397193 hsa-miR-302d-3p 0 0 1
chr1:16396917|16397193 hsa-miR-372-5p 0 0 1
chr1:16396917|16397193 hsa-miR-372-3p 0 0 1
chr1:16396917|16397193 hsa-miR-373-5p 0 0 1
chr1:16396917|16397193 hsa-miR-373-3p 0 0 1
chr1:16396917|16397193 hsa-miR-380-5p 0 0 1
chr1:16396917|16397193 hsa-miR-380-3p 0 0 1
chr1:16396917|16397193 hsa-miR-196b-5p 0 0 1
chr1:16396917|16397193 hsa-miR-196b-3p 0 0 1
chr1:16396917|16397193 hsa-miR-520e-5p 0 0 1
chr1:16396917|16397193 hsa-miR-520e-3p 0 0 1
chr1:16396917|16397193 hsa-miR-520b-5p 0 0 1
chr1:16396917|16397193 hsa-miR-520b-3p 0 0 1
chr1:16396917|16397193 hsa-miR-520g-5p 0 0 1
chr1:16396917|16397193 hsa-miR-520g-3p 0 0 1
chr1:16396917|16397193 hsa-miR-520h 0 0 1
chr1:16396917|16397193 hsa-miR-559 0 0 1
chr1:16396917|16397193 hsa-miR-604 0 0 1
chr1:16396917|16397193 hsa-miR-620 0 0 1
chr1:16396917|16397193 hsa-miR-633 0 0 1
chr1:16396917|16397193 hsa-miR-647 0 0 1
chr1:16396917|16397193 hsa-miR-892b 0 0 1
chr1:16396917|16397193 hsa-miR-548e-5p 0 0 1
chr1:16396917|16397193 hsa-miR-548e-3p 0 0 1
chr1:16396917|16397193 hsa-miR-548j-5p 0 0 1
chr1:16396917|16397193 hsa-miR-548j-3p 0 0 1
chr1:16396917|16397193 hsa-miR-1270 0 0 1
chr1:16396917|16397193 hsa-miR-302e 0 0 1
chr1:16396917|16397193 hsa-miR-1292-5p 0 0 1
chr1:16396917|16397193 hsa-miR-1292-3p 0 0 1
chr1:16396917|16397193 hsa-miR-1321 0 0 1
chr1:16396917|16397193 hsa-miR-140-5p 0 0 1
chr1:16396917|16397193 hsa-miR-512-3p 0 0 1
chr1:16396917|16397193 hsa-miR-188-5p 0 0 1
chr1:16396917|16397193 hsa-miR-1302 0 0 1
chr1:16396917|16397193 hsa-miR-520d-3p 0 0 1
chr1:16396917|16397193 hsa-miR-548b-5p 0 0 1
chr1:16396917|16397193 hsa-miR-548d-5p 0 0 1
chr1:16396917|16397193 hsa-miR-520a-3p 0 0 1
chr1:16396917|16397193 hsa-miR-520c-3p 0 0 1
chr1:16396917|16397193 hsa-miR-548a-3p 0 0 1
chr1:16396917|16397193 hsa-miR-142-3p 0 0 1
chr1:16396917|16397193 hsa-miR-548c-5p 0 0 1
chr1:16396917|16397193 hsa-miR-548a-5p 0 0 1
chr1:16396917|16397193 hsa-miR-548i 0 0 1
chr1:16396917|16397193 hsa-miR-138 0 0 1
chr1:16396917|16397193 hsa-miR-548f 0 0 1
chr1:16396917|16397193 hsa-let-7a 0 0 1
chr1:16396917|16397193 hsa-let-7f 0 0 1
chr1:16396917|16397193 hsa-miR-196a 0 0 1
chr1:16396917|16397193 hsa-miR-548h 0 0 1
chr1:16396917|16397193 hsa-miR-665 1 0 0
chr1:16396917|16397193 hsa-miR-766-5p 1 0 0
chr1:16396917|16397193 hsa-miR-6089 1 0 0
chr1:16396917|16397193 hsa-miR-6762-3p 1 0 0
chr1:16396917|16397193 hsa-miR-6757-3p 1 0 0
chr1:16396917|16397193 hsa-miR-6878-5p 1 0 0
chr1:16396917|16397193 hsa-miR-4732-3p 1 0 0
chr1:16396917|16397193 hsa-miR-584-3p 1 0 0
chr1:16396917|16397193 hsa-miR-6513-3p 1 0 0
chr1:16396917|16397193 hsa-miR-6814-5p 1 0 0
chr1:16396917|16397193 hsa-miR-1233-5p 1 0 0
chr1:16396917|16397193 hsa-miR-6756-5p 1 0 0
chr1:16396917|16397193 hsa-miR-4758-5p 1 0 0
chr1:16396917|16397193 hsa-miR-324-3p 1 0 0
chr1:16396917|16397193 hsa-miR-6876-5p 1 0 0
chr1:16396917|16397193 hsa-miR-3085-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:16396917|16397193
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MAGQSALLAFPPGLPLYPSPIKRKVSLWAGNHYYIRDGHYTFRMWTLG
Nucleotide Sequence ATGGCTGGGCAATCAGCACTTCTGGCGTTCCCACCTGGACTACCTCTATACCCTTCTCCAATTAAAAGGAAAGTCTCACTTTGGGCGGGAAACCACTATTACATAAGGGATGGACACTACACATTTAGAATGTGGACACTTGGTTAG
CircID chr1:16396917|16397193
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MGNQHFWRSHLDYLYTLLQLKGKSHFGRETTIT
Nucleotide Sequence CTGGGCAATCAGCACTTCTGGCGTTCCCACCTGGACTACCTCTATACCCTTCTCCAATTAAAAGGAAAGTCTCACTTTGGGCGGGAAACCACTATTACATAA
CircID chr1:16396917|16397193
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MPSHWDHLFLPHYPLVGGQSKGWLV
Nucleotide Sequence TTGCCCAGCCATTGGGACCACCTGTTCTTGCCCCACTACCCTCTAGTGGGAGGCCAAAGTAAAGGCTGGCTGGTG
CircID chr1:16396917|16397193
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MEKGIEVVQVGTPEVLIAQPLGPPVLAPLPSSGRPK
Nucleotide Sequence TTGGAGAAGGGTATAGAGGTAGTCCAGGTGGGAACGCCAGAAGTGCTGATTGCCCAGCCATTGGGACCACCTGTTCTTGCCCCACTACCCTCTAGTGGGAGGCCAAAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab