CircRNA Information

General Information
circRNA Basic Information
CircID chr1:164846628|164846864
Strand -
CircType exon
Host Gene ENSG00000185630.17;
Algorism CIRI2;
Sequence CTCCCCTACAGAAGGCCCTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCCCAGTTGGGGCAGGGGCAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGGGATGCTATTTCAGCCAATCTGGACACTTCTTTATACTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:164846628|164846864 hsa-miR-198 0 1 1
chr1:164846628|164846864 hsa-miR-141-5p 0 0 1
chr1:164846628|164846864 hsa-miR-141-3p 0 0 1
chr1:164846628|164846864 hsa-miR-185-5p 0 0 1
chr1:164846628|164846864 hsa-miR-185-3p 0 0 1
chr1:164846628|164846864 hsa-miR-186-5p 0 0 1
chr1:164846628|164846864 hsa-miR-186-3p 0 0 1
chr1:164846628|164846864 hsa-miR-200a-5p 0 0 1
chr1:164846628|164846864 hsa-miR-200a-3p 0 0 1
chr1:164846628|164846864 hsa-miR-340-5p 0 0 1
chr1:164846628|164846864 hsa-miR-340-3p 0 0 1
chr1:164846628|164846864 hsa-miR-202-5p 0 0 1
chr1:164846628|164846864 hsa-miR-202-3p 0 0 1
chr1:164846628|164846864 hsa-miR-622 0 0 1
chr1:164846628|164846864 hsa-miR-647 0 0 1
chr1:164846628|164846864 hsa-miR-1237-5p 0 0 1
chr1:164846628|164846864 hsa-miR-1237-3p 0 0 1
chr1:164846628|164846864 hsa-miR-1253 0 0 1
chr1:164846628|164846864 hsa-miR-486-3p 0 0 1
chr1:164846628|164846864 hsa-miR-142-5p 0 0 1
chr1:164846628|164846864 hsa-miR-361-5p 0 0 1
chr1:164846628|164846864 hsa-miR-324-5p 0 0 1
chr1:164846628|164846864 hsa-miR-628-5p 0 0 1
chr1:164846628|164846864 hsa-miR-324-3p 0 0 1
chr1:164846628|164846864 hsa-miR-220c 0 0 1
chr1:164846628|164846864 hsa-miR-768-5p 0 0 1
chr1:164846628|164846864 hsa-miR-923 0 0 1
chr1:164846628|164846864 hsa-miR-346 1 0 0
chr1:164846628|164846864 hsa-miR-564 0 1 0
chr1:164846628|164846864 hsa-miR-1202 1 0 0
chr1:164846628|164846864 hsa-miR-1913 0 1 0
chr1:164846628|164846864 hsa-miR-1976 0 1 0
chr1:164846628|164846864 hsa-miR-3132 1 0 0
chr1:164846628|164846864 hsa-miR-4290 0 1 0
chr1:164846628|164846864 hsa-miR-4425 1 1 0
chr1:164846628|164846864 hsa-miR-4469 0 1 0
chr1:164846628|164846864 hsa-miR-4512 0 1 0
chr1:164846628|164846864 hsa-miR-4538 1 0 0
chr1:164846628|164846864 hsa-miR-4651 1 0 0
chr1:164846628|164846864 hsa-miR-4669 1 0 0
chr1:164846628|164846864 hsa-miR-4706 1 0 0
chr1:164846628|164846864 hsa-miR-6069 1 0 0
chr1:164846628|164846864 hsa-miR-8075 1 0 0
chr1:164846628|164846864 hsa-miR-8085 1 1 0
chr1:164846628|164846864 hsa-miR-92a-1-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6892-3p 0 1 0
chr1:164846628|164846864 hsa-miR-210-5p 0 1 0
chr1:164846628|164846864 hsa-miR-6799-5p 1 0 0
chr1:164846628|164846864 hsa-miR-3192-5p 0 1 0
chr1:164846628|164846864 hsa-miR-4709-3p 0 1 0
chr1:164846628|164846864 hsa-miR-4755-3p 1 0 0
chr1:164846628|164846864 hsa-miR-6875-3p 0 1 0
chr1:164846628|164846864 hsa-miR-6727-5p 1 0 0
chr1:164846628|164846864 hsa-miR-1178-5p 0 1 0
chr1:164846628|164846864 hsa-miR-8069 1 0 0
chr1:164846628|164846864 hsa-miR-6845-3p 0 1 0
chr1:164846628|164846864 hsa-miR-5006-5p 1 1 0
chr1:164846628|164846864 hsa-miR-7109-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6753-5p 1 0 0
chr1:164846628|164846864 hsa-miR-30c-2-3p 0 1 0
chr1:164846628|164846864 hsa-miR-1908-5p 1 0 0
chr1:164846628|164846864 hsa-miR-4667-3p 0 1 0
chr1:164846628|164846864 hsa-miR-6752-3p 0 1 0
chr1:164846628|164846864 hsa-miR-5197-3p 0 1 0
chr1:164846628|164846864 hsa-miR-6748-3p 0 1 0
chr1:164846628|164846864 hsa-miR-5699-5p 0 1 0
chr1:164846628|164846864 hsa-miR-1207-5p 1 0 0
chr1:164846628|164846864 hsa-miR-1233-5p 1 0 0
chr1:164846628|164846864 hsa-miR-1273h-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6803-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6851-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6780a-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6788-5p 0 1 0
chr1:164846628|164846864 hsa-miR-4685-3p 0 1 0
chr1:164846628|164846864 hsa-miR-5196-5p 1 0 0
chr1:164846628|164846864 hsa-miR-4685-5p 0 1 0
chr1:164846628|164846864 hsa-miR-30c-1-3p 0 1 0
chr1:164846628|164846864 hsa-miR-6731-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6758-5p 1 1 0
chr1:164846628|164846864 hsa-miR-4646-5p 1 0 0
chr1:164846628|164846864 hsa-miR-4747-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6529-5p 1 0 0
chr1:164846628|164846864 hsa-miR-6801-3p 0 1 0
chr1:164846628|164846864 hsa-miR-6810-3p 0 1 0
chr1:164846628|164846864 hsa-miR-4723-3p 0 1 0
chr1:164846628|164846864 hsa-miR-6500-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:164846628|164846864
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MKRSDWRSKQSANTIRVSFSSLLWDAISANLDTSLYS
Nucleotide Sequence CTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGGGATGCTATTTCAGCCAATCTGGACACTTCTTTATACTCT
CircID chr1:164846628|164846864
ORF Type ORF2
Protein Length 73
Nucleotide Length 219
Protein Sequence MAVFTLIPPTDLPAIASRLTLCPSWGRGRREGFSPNAEAVRLEVEAISKHNKSLLLFSSLGCYFSQSGHFFIL
Nucleotide Sequence CTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCCCAGTTGGGGCAGGGGCAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGGGATGCTATTTCAGCCAATCTGGACACTTCTTTATACTC
CircID chr1:164846628|164846864
ORF Type ORF3
Protein Length 69
Nucleotide Length 210
Protein Sequence MAEIASQRREEKETLIVFADCFDLQSDRFSVGRETLPPAPAPTGAQGQPGCDCWEISWRYQSEHCQGLL
Nucleotide Sequence TTGGCTGAAATAGCATCCCAAAGAAGAGAAGAGAAGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCTGCCCCTGCCCCAACTGGGGCACAGGGTCAGCCGGGATGCGATTGCTGGGAGATCAGTTGGAGGTATCAGAGTGAACACTGCCAGGGCCTTCTGTAG
CircID chr1:164846628|164846864
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MCLLIASTSSLTASALGEKPSLLPLPQLGHRVSRDAIAGRSVGGIRVNTARAFCRG
Nucleotide Sequence TTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCTGCCCCTGCCCCAACTGGGGCACAGGGTCAGCCGGGATGCGATTGCTGGGAGATCAGTTGGAGGTATCAGAGTGAACACTGCCAGGGCCTTCTGTAGGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab