CircRNA Information

General Information
circRNA Basic Information
CircID chr1:165910625|165910757
Strand +
CircType exon
Host Gene ENSG00000143179.11;
Algorism CIRI2;
Sequence CCTGTCTCTGCCCTCCTTCCCTGGCCTGTCCCACAGACATCCCGTTGTTTAACCCACTGCCTTTGCAAGGACCTGCTCTGTCCACTCCAAATCAAAGGATACTTGCATCCTTCTTACACAGACTCCCATCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:165910625|165910757 hsa-miR-34a-5p 0 0 1
chr1:165910625|165910757 hsa-miR-34a-3p 0 0 1
chr1:165910625|165910757 hsa-miR-122-5p 0 0 1
chr1:165910625|165910757 hsa-miR-122-3p 0 0 1
chr1:165910625|165910757 hsa-miR-449a 0 0 1
chr1:165910625|165910757 hsa-miR-527 0 0 1
chr1:165910625|165910757 hsa-miR-449b-5p 0 0 1
chr1:165910625|165910757 hsa-miR-449b-3p 0 0 1
chr1:165910625|165910757 hsa-miR-501-5p 0 0 1
chr1:165910625|165910757 hsa-miR-502-5p 0 0 1
chr1:165910625|165910757 hsa-miR-654-3p 0 0 1
chr1:165910625|165910757 hsa-miR-362-5p 0 0 1
chr1:165910625|165910757 hsa-miR-1302 0 0 1
chr1:165910625|165910757 hsa-miR-34c-5p 0 0 1
chr1:165910625|165910757 hsa-miR-518a-5p 0 0 1
chr1:165910625|165910757 hsa-miR-768-5p 0 0 1
chr1:165910625|165910757 hsa-miR-608 1 0 0
chr1:165910625|165910757 hsa-miR-2861 1 0 0
chr1:165910625|165910757 hsa-miR-3138 1 0 0
chr1:165910625|165910757 hsa-miR-3141 1 0 0
chr1:165910625|165910757 hsa-miR-3147 1 0 0
chr1:165910625|165910757 hsa-miR-3154 1 0 0
chr1:165910625|165910757 hsa-miR-4298 1 0 0
chr1:165910625|165910757 hsa-miR-4270 1 0 0
chr1:165910625|165910757 hsa-miR-4271 1 0 0
chr1:165910625|165910757 hsa-miR-2392 1 0 0
chr1:165910625|165910757 hsa-miR-4507 1 0 0
chr1:165910625|165910757 hsa-miR-4510 1 0 0
chr1:165910625|165910757 hsa-miR-4648 1 0 0
chr1:165910625|165910757 hsa-miR-4651 1 0 0
chr1:165910625|165910757 hsa-miR-4688 1 0 0
chr1:165910625|165910757 hsa-miR-4692 1 0 0
chr1:165910625|165910757 hsa-miR-4710 1 0 0
chr1:165910625|165910757 hsa-miR-4739 1 0 0
chr1:165910625|165910757 hsa-miR-4741 1 0 0
chr1:165910625|165910757 hsa-miR-4748 1 0 0
chr1:165910625|165910757 hsa-miR-5090 1 0 0
chr1:165910625|165910757 hsa-miR-6081 1 0 0
chr1:165910625|165910757 hsa-miR-6127 1 0 0
chr1:165910625|165910757 hsa-miR-6134 1 0 0
chr1:165910625|165910757 hsa-miR-12128 1 0 0
chr1:165910625|165910757 hsa-miR-150-3p 1 0 0
chr1:165910625|165910757 hsa-miR-4433b-3p 1 0 0
chr1:165910625|165910757 hsa-miR-504-3p 1 0 0
chr1:165910625|165910757 hsa-miR-6747-5p 1 0 0
chr1:165910625|165910757 hsa-miR-1972 1 0 0
chr1:165910625|165910757 hsa-miR-6728-5p 1 0 0
chr1:165910625|165910757 hsa-miR-8071 1 0 0
chr1:165910625|165910757 hsa-miR-6089 1 0 0
chr1:165910625|165910757 hsa-miR-6757-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4695-5p 1 0 0
chr1:165910625|165910757 hsa-miR-3677-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4655-5p 1 0 0
chr1:165910625|165910757 hsa-miR-8069 1 0 0
chr1:165910625|165910757 hsa-miR-7845-5p 1 0 0
chr1:165910625|165910757 hsa-miR-3151-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6748-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6793-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6732-5p 1 0 0
chr1:165910625|165910757 hsa-miR-3190-3p 1 0 0
chr1:165910625|165910757 hsa-miR-6798-5p 1 0 0
chr1:165910625|165910757 hsa-miR-3126-5p 1 0 0
chr1:165910625|165910757 hsa-miR-486-3p 1 0 0
chr1:165910625|165910757 hsa-miR-2467-3p 1 0 0
chr1:165910625|165910757 hsa-miR-6782-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6514-5p 1 0 0
chr1:165910625|165910757 hsa-miR-5006-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6786-5p 1 0 0
chr1:165910625|165910757 hsa-miR-204-3p 1 0 0
chr1:165910625|165910757 hsa-miR-4640-5p 1 0 0
chr1:165910625|165910757 hsa-miR-885-3p 1 0 0
chr1:165910625|165910757 hsa-miR-92b-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6749-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6830-5p 1 0 0
chr1:165910625|165910757 hsa-miR-574-5p 1 0 0
chr1:165910625|165910757 hsa-miR-423-5p 1 0 0
chr1:165910625|165910757 hsa-miR-1295b-3p 1 0 0
chr1:165910625|165910757 hsa-miR-483-5p 1 0 0
chr1:165910625|165910757 hsa-miR-1207-5p 1 0 0
chr1:165910625|165910757 hsa-miR-1233-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4763-3p 1 0 0
chr1:165910625|165910757 hsa-miR-6769b-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6778-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6787-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6812-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6743-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6752-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6754-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6803-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6819-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6851-5p 1 0 0
chr1:165910625|165910757 hsa-miR-7110-5p 1 0 0
chr1:165910625|165910757 hsa-miR-10401-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6751-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6779-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6780a-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6808-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6879-5p 1 0 0
chr1:165910625|165910757 hsa-miR-7111-5p 1 0 0
chr1:165910625|165910757 hsa-miR-3620-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4728-5p 1 0 0
chr1:165910625|165910757 hsa-miR-5196-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6780b-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6836-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6862-5p 1 0 0
chr1:165910625|165910757 hsa-miR-328-5p 1 0 0
chr1:165910625|165910757 hsa-miR-449c-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4632-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4649-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4685-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4725-3p 1 0 0
chr1:165910625|165910757 hsa-miR-4726-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6729-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6735-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6889-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6845-5p 1 0 0
chr1:165910625|165910757 hsa-miR-4769-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6511a-5p 1 0 0
chr1:165910625|165910757 hsa-miR-3940-5p 1 0 0
chr1:165910625|165910757 hsa-miR-3173-3p 1 0 0
chr1:165910625|165910757 hsa-miR-4646-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6876-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6849-5p 1 0 0
chr1:165910625|165910757 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:165910625|165910757
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MACPTDIPLFNPLPLQGPALSTPNQRILASFLHRLPS
Nucleotide Sequence CTGGCCTGTCCCACAGACATCCCGTTGTTTAACCCACTGCCTTTGCAAGGACCTGCTCTGTCCACTCCAAATCAAAGGATACTTGCATCCTTCTTACACAGACTCCCATCT
CircID chr1:165910625|165910757
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGVCVRRMQVSFDLEWTEQVLAKAVG
Nucleotide Sequence ATGGGAGTCTGTGTAAGAAGGATGCAAGTATCCTTTGATTTGGAGTGGACAGAGCAGGTCCTTGCAAAGGCAGTGGGTTAA
CircID chr1:165910625|165910757
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MIWSGQSRSLQRQWVKQRDVCGTGQGRRAET
Nucleotide Sequence TTGATTTGGAGTGGACAGAGCAGGTCCTTGCAAAGGCAGTGGGTTAAACAACGGGATGTCTGTGGGACAGGCCAGGGAAGGAGGGCAGAGACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab