CircRNA Information

General Information
circRNA Basic Information
CircID chr1:167005112|167005397
Strand +
CircType exon
Host Gene ENSG00000143194.11;
Algorism CIRI2;
Sequence CTTGTGTTGCTAGAATAATCCCACATGGCCACATCTAGGAGGCTTCGAATCCAAGTCTTAGAGGGCTCCTTGAGAAATTTTTGTTGGTAGATCCCCACTACAAGGTCCTCTACAGTGAGAAGTTGTAGATCTTGCCTGATTTCTTCCATTAGTAAATGGAAAAACACATACAATTAGTAAATTTAGATACCTGGAAGATATCAAAGTGGAAACAAATACAGATATTAACTATAAAGCACTTCTGCAGCAACCCAGAGTTTTACTTACCTGATGCCTTTGCCATATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:167005112|167005397 hsa-miR-31-5p 0 0 1
chr1:167005112|167005397 hsa-miR-31-3p 0 0 1
chr1:167005112|167005397 hsa-miR-183-5p 0 0 1
chr1:167005112|167005397 hsa-miR-183-3p 0 0 1
chr1:167005112|167005397 hsa-miR-302a-5p 0 0 1
chr1:167005112|167005397 hsa-miR-302a-3p 0 0 1
chr1:167005112|167005397 hsa-miR-302b-5p 0 0 1
chr1:167005112|167005397 hsa-miR-302b-3p 0 0 1
chr1:167005112|167005397 hsa-miR-302c-5p 0 0 1
chr1:167005112|167005397 hsa-miR-302c-3p 0 0 1
chr1:167005112|167005397 hsa-miR-302d-5p 0 0 1
chr1:167005112|167005397 hsa-miR-302d-3p 0 0 1
chr1:167005112|167005397 hsa-miR-372-5p 0 0 1
chr1:167005112|167005397 hsa-miR-372-3p 0 0 1
chr1:167005112|167005397 hsa-miR-373-5p 0 0 1
chr1:167005112|167005397 hsa-miR-373-3p 0 0 1
chr1:167005112|167005397 hsa-miR-326 0 0 1
chr1:167005112|167005397 hsa-miR-520e-5p 0 0 1
chr1:167005112|167005397 hsa-miR-520e-3p 0 0 1
chr1:167005112|167005397 hsa-miR-520f-5p 0 0 1
chr1:167005112|167005397 hsa-miR-520f-3p 0 0 1
chr1:167005112|167005397 hsa-miR-520b-5p 0 0 1
chr1:167005112|167005397 hsa-miR-520b-3p 0 0 1
chr1:167005112|167005397 hsa-miR-567 0 0 1
chr1:167005112|167005397 hsa-miR-587 0 0 1
chr1:167005112|167005397 hsa-miR-298 0 0 1
chr1:167005112|167005397 hsa-miR-890 0 0 1
chr1:167005112|167005397 hsa-miR-889-5p 0 0 1
chr1:167005112|167005397 hsa-miR-889-3p 0 0 1
chr1:167005112|167005397 hsa-miR-877-5p 0 0 1
chr1:167005112|167005397 hsa-miR-877-3p 0 0 1
chr1:167005112|167005397 hsa-miR-297 0 0 1
chr1:167005112|167005397 hsa-miR-1183 1 1 1
chr1:167005112|167005397 hsa-miR-1229-5p 0 0 1
chr1:167005112|167005397 hsa-miR-1229-3p 0 0 1
chr1:167005112|167005397 hsa-miR-663b 0 0 1
chr1:167005112|167005397 hsa-miR-1208 0 0 1
chr1:167005112|167005397 hsa-miR-548e-5p 0 0 1
chr1:167005112|167005397 hsa-miR-548e-3p 0 0 1
chr1:167005112|167005397 hsa-miR-302e 0 0 1
chr1:167005112|167005397 hsa-miR-513c-5p 0 0 1
chr1:167005112|167005397 hsa-miR-513c-3p 0 0 1
chr1:167005112|167005397 hsa-miR-491-5p 0 0 1
chr1:167005112|167005397 hsa-miR-1283 0 0 1
chr1:167005112|167005397 hsa-miR-299-3p 0 0 1
chr1:167005112|167005397 hsa-miR-576-3p 0 0 1
chr1:167005112|167005397 hsa-miR-330-5p 0 0 1
chr1:167005112|167005397 hsa-miR-520d-3p 0 0 1
chr1:167005112|167005397 hsa-miR-513a-3p 0 0 1
chr1:167005112|167005397 hsa-miR-520a-3p 0 0 1
chr1:167005112|167005397 hsa-miR-520c-3p 0 0 1
chr1:167005112|167005397 hsa-miR-548a-3p 0 0 1
chr1:167005112|167005397 hsa-miR-142-3p 0 0 1
chr1:167005112|167005397 hsa-miR-1233 0 0 1
chr1:167005112|167005397 hsa-miR-7 0 0 1
chr1:167005112|167005397 hsa-miR-548f 0 0 1
chr1:167005112|167005397 hsa-miR-499-5p 0 0 1
chr1:167005112|167005397 hsa-miR-555 0 1 0
chr1:167005112|167005397 hsa-miR-611 1 0 0
chr1:167005112|167005397 hsa-miR-638 1 0 0
chr1:167005112|167005397 hsa-miR-3909 0 1 0
chr1:167005112|167005397 hsa-miR-3911 1 0 0
chr1:167005112|167005397 hsa-miR-4516 1 0 0
chr1:167005112|167005397 hsa-miR-6069 1 0 0
chr1:167005112|167005397 hsa-miR-8087 0 1 0
chr1:167005112|167005397 hsa-miR-150-3p 1 0 0
chr1:167005112|167005397 hsa-miR-92a-2-5p 1 0 0
chr1:167005112|167005397 hsa-miR-7154-3p 1 0 0
chr1:167005112|167005397 hsa-miR-3622b-5p 1 0 0
chr1:167005112|167005397 hsa-miR-3187-3p 1 1 0
chr1:167005112|167005397 hsa-miR-4711-5p 0 1 0
chr1:167005112|167005397 hsa-miR-6796-5p 1 0 0
chr1:167005112|167005397 hsa-miR-6829-5p 1 0 0
chr1:167005112|167005397 hsa-miR-656-5p 1 0 0
chr1:167005112|167005397 hsa-miR-2467-3p 1 0 0
chr1:167005112|167005397 hsa-miR-6786-5p 1 0 0
chr1:167005112|167005397 hsa-miR-5004-3p 0 1 0
chr1:167005112|167005397 hsa-miR-3614-5p 0 1 0
chr1:167005112|167005397 hsa-miR-6823-5p 1 0 0
chr1:167005112|167005397 hsa-miR-6717-5p 1 0 0
chr1:167005112|167005397 hsa-miR-1304-3p 0 1 0
chr1:167005112|167005397 hsa-miR-4727-3p 0 1 0
chr1:167005112|167005397 hsa-miR-3614-3p 0 1 0
chr1:167005112|167005397 hsa-miR-5089-5p 0 1 0
chr1:167005112|167005397 hsa-miR-1296-3p 0 1 0
chr1:167005112|167005397 hsa-miR-4772-5p 0 1 0
chr1:167005112|167005397 hsa-miR-6865-5p 1 0 0
chr1:167005112|167005397 hsa-miR-6752-5p 1 0 0
chr1:167005112|167005397 hsa-miR-6769a-5p 1 0 0
chr1:167005112|167005397 hsa-miR-6803-5p 1 0 0
chr1:167005112|167005397 hsa-miR-5196-5p 1 0 0
chr1:167005112|167005397 hsa-miR-6780b-5p 1 0 0
chr1:167005112|167005397 hsa-miR-4632-5p 1 0 0
chr1:167005112|167005397 hsa-miR-4725-3p 1 0 0
chr1:167005112|167005397 hsa-miR-6735-5p 1 0 0
chr1:167005112|167005397 hsa-miR-939-5p 1 0 0
chr1:167005112|167005397 hsa-miR-3940-5p 0 1 0
chr1:167005112|167005397 hsa-miR-6791-3p 0 1 0
chr1:167005112|167005397 hsa-miR-769-3p 1 0 0
chr1:167005112|167005397 hsa-miR-6829-3p 0 1 0
chr1:167005112|167005397 hsa-miR-499a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:167005112|167005397
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MEDIKVETNTDINYKALLQQPRVLLT
Nucleotide Sequence CTGGAAGATATCAAAGTGGAAACAAATACAGATATTAACTATAAAGCACTTCTGCAGCAACCCAGAGTTTTACTTACCTGA

CircID chr1:167005112|167005397
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MEKHIQLVNLDTWKISKWKQIQILTIKHFCSNPEFYLPDAFAI
Nucleotide Sequence ATGGAAAAACACATACAATTAGTAAATTTAGATACCTGGAAGATATCAAAGTGGAAACAAATACAGATATTAACTATAAAGCACTTCTGCAGCAACCCAGAGTTTTACTTACCTGATGCCTTTGCCATA

CircID chr1:167005112|167005397
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MLQKCFIVNICICFHFDIFQVSKFTNCMCFSIY
Nucleotide Sequence TTGCTGCAGAAGTGCTTTATAGTTAATATCTGTATTTGTTTCCACTTTGATATCTTCCAGGTATCTAAATTTACTAATTGTATGTGTTTTTCCATTTACTAA

CircID chr1:167005112|167005397
ORF Type ORF4
Protein Length 48
Nucleotide Length 147
Protein Sequence MISSRYLNLLIVCVFPFTNGRNQARSTTSHCRGPCSGDLPTKISQGAL
Nucleotide Sequence TTGATATCTTCCAGGTATCTAAATTTACTAATTGTATGTGTTTTTCCATTTACTAATGGAAGAAATCAGGCAAGATCTACAACTTCTCACTGTAGAGGACCTTGTAGTGGGGATCTACCAACAAAAATTTCTCAAGGAGCCCTCTAA

CircID chr1:167005112|167005397
ORF Type ORF5
Protein Length 57
Nucleotide Length 171
Protein Sequence MYVFFHLLMEEIRQDLQLLTVEDLVVGIYQQKFLKEPSKTWIRSLLDVAMWDYSSNT
Nucleotide Sequence TTGTATGTGTTTTTCCATTTACTAATGGAAGAAATCAGGCAAGATCTACAACTTCTCACTGTAGAGGACCTTGTAGTGGGGATCTACCAACAAAAATTTCTCAAGGAGCCCTCTAAGACTTGGATTCGAAGCCTCCTAGATGTGGCCATGTGGGATTATTCTAGCAACACA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites