CircRNA Information

General Information
circRNA Basic Information
CircID chr1:168253816|168254098
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTCACATCATTTCCCCTCCCAATCCCTATTCTCTCTGTCCCTCTCAAAGTAATGACTATTCTAACTCACGCAAATAACTTCCTTGCTTTTCATTATTTTATCACCAATGGAAGCACCAAAGAACTTGAAAGTCCAGAGTTATTTTACCTATTTTCTTAAACTTCATATGATAACACAATAGGTACTAGATACATCTGTTGGCCATTCACATATCTGGCTTTGTGTGTTCAAATCTTAACCAAGTTGCCTTTGAAAAGATCAATGAAAAAAGCTGCCAACCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:168253816|168254098 hsa-miR-26b-5p 0 0 1
chr1:168253816|168254098 hsa-miR-26b-3p 0 0 1
chr1:168253816|168254098 hsa-miR-325 0 0 1
chr1:168253816|168254098 hsa-miR-422a 0 0 1
chr1:168253816|168254098 hsa-miR-487a-5p 0 0 1
chr1:168253816|168254098 hsa-miR-487a-3p 0 0 1
chr1:168253816|168254098 hsa-miR-498-5p 0 0 1
chr1:168253816|168254098 hsa-miR-498-3p 0 0 1
chr1:168253816|168254098 hsa-miR-607 0 0 1
chr1:168253816|168254098 hsa-miR-618 0 0 1
chr1:168253816|168254098 hsa-miR-891b 0 0 1
chr1:168253816|168254098 hsa-miR-190b-5p 0 0 1
chr1:168253816|168254098 hsa-miR-190b-3p 0 0 1
chr1:168253816|168254098 hsa-miR-1294 0 0 1
chr1:168253816|168254098 hsa-miR-1297 0 0 1
chr1:168253816|168254098 hsa-miR-1305 0 0 1
chr1:168253816|168254098 hsa-miR-1257 0 0 1
chr1:168253816|168254098 hsa-miR-885-3p 0 0 1
chr1:168253816|168254098 hsa-miR-628-3p 0 0 1
chr1:168253816|168254098 hsa-miR-516a-3p 0 0 1
chr1:168253816|168254098 hsa-miR-9 0 0 1
chr1:168253816|168254098 hsa-miR-378 0 0 1
chr1:168253816|168254098 hsa-miR-26a 0 0 1
chr1:168253816|168254098 hsa-miR-190 0 0 1
chr1:168253816|168254098 hsa-miR-184 1 0 0
chr1:168253816|168254098 hsa-miR-762 1 0 0
chr1:168253816|168254098 hsa-miR-378b 0 1 0
chr1:168253816|168254098 hsa-miR-3138 1 0 0
chr1:168253816|168254098 hsa-miR-3154 1 0 0
chr1:168253816|168254098 hsa-miR-3174 1 0 0
chr1:168253816|168254098 hsa-miR-4298 1 0 0
chr1:168253816|168254098 hsa-miR-4270 1 0 0
chr1:168253816|168254098 hsa-miR-4271 1 0 0
chr1:168253816|168254098 hsa-miR-3945 1 0 0
chr1:168253816|168254098 hsa-miR-548ab 0 1 0
chr1:168253816|168254098 hsa-miR-4441 1 0 0
chr1:168253816|168254098 hsa-miR-4450 1 1 0
chr1:168253816|168254098 hsa-miR-4462 1 0 0
chr1:168253816|168254098 hsa-miR-4463 1 0 0
chr1:168253816|168254098 hsa-miR-4476 1 0 0
chr1:168253816|168254098 hsa-miR-3689c 1 1 0
chr1:168253816|168254098 hsa-miR-4507 1 0 0
chr1:168253816|168254098 hsa-miR-4510 1 0 0
chr1:168253816|168254098 hsa-miR-4651 1 0 0
chr1:168253816|168254098 hsa-miR-4656 1 0 0
chr1:168253816|168254098 hsa-miR-4688 1 0 0
chr1:168253816|168254098 hsa-miR-5090 1 0 0
chr1:168253816|168254098 hsa-miR-5194 1 0 0
chr1:168253816|168254098 hsa-miR-5739 1 0 0
chr1:168253816|168254098 hsa-miR-6085 1 0 0
chr1:168253816|168254098 hsa-miR-6086 1 0 0
chr1:168253816|168254098 hsa-miR-6090 1 0 0
chr1:168253816|168254098 hsa-miR-6124 1 0 0
chr1:168253816|168254098 hsa-miR-6127 1 0 0
chr1:168253816|168254098 hsa-miR-6133 1 0 0
chr1:168253816|168254098 hsa-miR-7150 1 0 0
chr1:168253816|168254098 hsa-miR-8055 0 1 0
chr1:168253816|168254098 hsa-miR-8085 1 0 0
chr1:168253816|168254098 hsa-miR-12119 1 0 0
chr1:168253816|168254098 hsa-miR-211-3p 1 0 0
chr1:168253816|168254098 hsa-miR-135a-3p 1 1 0
chr1:168253816|168254098 hsa-miR-6734-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6765-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6857-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6510-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6728-5p 1 0 0
chr1:168253816|168254098 hsa-miR-1236-5p 1 0 0
chr1:168253816|168254098 hsa-miR-3192-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6757-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6873-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6746-5p 1 0 0
chr1:168253816|168254098 hsa-miR-4677-5p 0 1 0
chr1:168253816|168254098 hsa-miR-7845-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6716-5p 1 0 0
chr1:168253816|168254098 hsa-miR-3151-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6732-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6798-5p 1 0 0
chr1:168253816|168254098 hsa-miR-3126-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6760-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6782-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6810-5p 1 0 0
chr1:168253816|168254098 hsa-miR-30b-3p 1 1 0
chr1:168253816|168254098 hsa-miR-7109-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6740-5p 1 0 0
chr1:168253816|168254098 hsa-miR-1228-5p 1 0 0
chr1:168253816|168254098 hsa-miR-296-3p 1 0 0
chr1:168253816|168254098 hsa-miR-6771-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6834-5p 1 0 0
chr1:168253816|168254098 hsa-miR-149-3p 1 1 0
chr1:168253816|168254098 hsa-miR-6507-5p 1 0 0
chr1:168253816|168254098 hsa-miR-202-3p 1 0 0
chr1:168253816|168254098 hsa-miR-3162-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6781-5p 1 0 0
chr1:168253816|168254098 hsa-miR-423-5p 1 1 0
chr1:168253816|168254098 hsa-miR-616-3p 1 0 0
chr1:168253816|168254098 hsa-miR-6818-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6801-5p 1 0 0
chr1:168253816|168254098 hsa-miR-7113-5p 1 0 0
chr1:168253816|168254098 hsa-miR-4790-3p 0 1 0
chr1:168253816|168254098 hsa-miR-1207-5p 1 0 0
chr1:168253816|168254098 hsa-miR-1233-5p 1 0 0
chr1:168253816|168254098 hsa-miR-3689b-3p 1 1 0
chr1:168253816|168254098 hsa-miR-6778-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6870-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6743-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6754-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6756-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6803-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6813-5p 1 0 0
chr1:168253816|168254098 hsa-miR-1249-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6751-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6763-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6779-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6780a-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6788-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6797-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6875-5p 1 0 0
chr1:168253816|168254098 hsa-miR-4728-5p 1 1 0
chr1:168253816|168254098 hsa-miR-3689a-3p 1 1 0
chr1:168253816|168254098 hsa-miR-4726-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6735-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6738-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6794-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6795-5p 0 1 0
chr1:168253816|168254098 hsa-miR-6858-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6883-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6887-5p 0 1 0
chr1:168253816|168254098 hsa-miR-6845-5p 1 0 0
chr1:168253816|168254098 hsa-miR-4758-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6511a-5p 1 0 0
chr1:168253816|168254098 hsa-miR-3940-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6758-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6856-5p 1 0 0
chr1:168253816|168254098 hsa-miR-4665-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6855-5p 1 0 0
chr1:168253816|168254098 hsa-miR-4700-5p 1 0 0
chr1:168253816|168254098 hsa-miR-3679-5p 1 0 0
chr1:168253816|168254098 hsa-miR-4716-3p 1 0 0
chr1:168253816|168254098 hsa-miR-6766-5p 1 0 0
chr1:168253816|168254098 hsa-miR-6785-5p 1 1 0
chr1:168253816|168254098 hsa-miR-6849-5p 1 0 0
chr1:168253816|168254098 hsa-miR-5009-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:168253816|168254098
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLAIHISGFVCSNLNQVAFEKINEKSCQP
Nucleotide Sequence CTGTTGGCCATTCACATATCTGGCTTTGTGTGTTCAAATCTTAACCAAGTTGCCTTTGAAAAGATCAATGAAAAAAGCTGCCAACCT
CircID chr1:168253816|168254098
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MTILTHANNFLAFHYFITNGSTKELESPELFYLFS
Nucleotide Sequence ATGACTATTCTAACTCACGCAAATAACTTCCTTGCTTTTCATTATTTTATCACCAATGGAAGCACCAAAGAACTTGAAAGTCCAGAGTTATTTTACCTATTTTCTTAA
CircID chr1:168253816|168254098
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MLFIILSPMEAPKNLKVQSYFTYFLKLHMITQ
Nucleotide Sequence TTGCTTTTCATTATTTTATCACCAATGGAAGCACCAAAGAACTTGAAAGTCCAGAGTTATTTTACCTATTTTCTTAAACTTCATATGATAACACAATAG
CircID chr1:168253816|168254098
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MCYHMKFKKIGKITLDFQVLWCFHW
Nucleotide Sequence TTGTGTTATCATATGAAGTTTAAGAAAATAGGTAAAATAACTCTGGACTTTCAAGTTCTTTGGTGCTTCCATTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab