CircRNA Information

General Information
circRNA Basic Information
CircID chr1:168696146|168696498
Strand -
CircType exon
Host Gene ENSG00000143196.4;
Algorism CIRI2;
Sequence CTTCACTGCACCTCTCCTCCAGTTCTGCCTCTCCCCTCCACTATGCTGAACTTGCAGTTCATTCTGCAGTAAAAAGCAGTAGCCAGGCTGCAGCTGGTGCTCCAGAAGCCCGGCTGTAAGCATGCGCACTGTATATGTGGTGTGCAAGGAAGCCATCATCAGTCATATAAAGCAGTTGCTATGAAACATGTGAAAAGTGAGAAACATGGTTTAATTGTGGATTTTATTAGAAGTGTGATACTAGTCAGAAAGGCCCAGGAAGTTGGCATTGCAGTTACCAGCTCAGGGAGAAGGAAAGAGAGCAGCAGAAACTTCTATAGGAGATCCAACTGATGTTAACATATGTGGACACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:168696146|168696498 hsa-miR-23a-5p 0 0 1
chr1:168696146|168696498 hsa-miR-23a-3p 0 0 1
chr1:168696146|168696498 hsa-miR-29a-5p 0 0 1
chr1:168696146|168696498 hsa-miR-29a-3p 0 0 1
chr1:168696146|168696498 hsa-miR-217-5p 0 0 1
chr1:168696146|168696498 hsa-miR-217-3p 0 0 1
chr1:168696146|168696498 hsa-miR-23b-5p 0 0 1
chr1:168696146|168696498 hsa-miR-23b-3p 0 0 1
chr1:168696146|168696498 hsa-miR-29c-5p 0 0 1
chr1:168696146|168696498 hsa-miR-29c-3p 0 0 1
chr1:168696146|168696498 hsa-miR-135b-5p 0 0 1
chr1:168696146|168696498 hsa-miR-135b-3p 0 0 1
chr1:168696146|168696498 hsa-miR-345-5p 0 0 1
chr1:168696146|168696498 hsa-miR-345-3p 0 0 1
chr1:168696146|168696498 hsa-miR-376b-5p 0 0 1
chr1:168696146|168696498 hsa-miR-376b-3p 0 0 1
chr1:168696146|168696498 hsa-miR-558 0 0 1
chr1:168696146|168696498 hsa-miR-600 0 0 1
chr1:168696146|168696498 hsa-miR-765 1 1 1
chr1:168696146|168696498 hsa-miR-298 0 0 1
chr1:168696146|168696498 hsa-miR-933 0 0 1
chr1:168696146|168696498 hsa-miR-1226-5p 0 0 1
chr1:168696146|168696498 hsa-miR-1226-3p 0 0 1
chr1:168696146|168696498 hsa-miR-1229-5p 0 0 1
chr1:168696146|168696498 hsa-miR-1229-3p 0 0 1
chr1:168696146|168696498 hsa-miR-1237-5p 0 0 1
chr1:168696146|168696498 hsa-miR-1237-3p 0 0 1
chr1:168696146|168696498 hsa-miR-1299 0 0 1
chr1:168696146|168696498 hsa-miR-1248 0 0 1
chr1:168696146|168696498 hsa-miR-1827 0 0 1
chr1:168696146|168696498 hsa-miR-1184 0 0 1
chr1:168696146|168696498 hsa-miR-502-5p 0 0 1
chr1:168696146|168696498 hsa-miR-576-5p 0 0 1
chr1:168696146|168696498 hsa-miR-337-3p 0 0 1
chr1:168696146|168696498 hsa-miR-125a-5p 0 0 1
chr1:168696146|168696498 hsa-miR-509-3-5p 0 0 1
chr1:168696146|168696498 hsa-miR-509-5p 0 0 1
chr1:168696146|168696498 hsa-miR-516a-3p 0 0 1
chr1:168696146|168696498 hsa-miR-125b 0 0 1
chr1:168696146|168696498 hsa-miR-135a 0 0 1
chr1:168696146|168696498 hsa-miR-516b 0 0 1
chr1:168696146|168696498 hsa-miR-544 0 0 1
chr1:168696146|168696498 hsa-miR-376a 0 0 1
chr1:168696146|168696498 hsa-miR-29b 0 0 1
chr1:168696146|168696498 hsa-miR-1259 0 0 1
chr1:168696146|168696498 hsa-miR-612 1 0 0
chr1:168696146|168696498 hsa-miR-650 1 0 0
chr1:168696146|168696498 hsa-miR-658 1 0 0
chr1:168696146|168696498 hsa-miR-762 1 0 0
chr1:168696146|168696498 hsa-miR-1183 1 1 0
chr1:168696146|168696498 hsa-miR-1275 1 0 0
chr1:168696146|168696498 hsa-miR-3132 1 0 0
chr1:168696146|168696498 hsa-miR-3147 1 0 0
chr1:168696146|168696498 hsa-miR-3175 1 1 0
chr1:168696146|168696498 hsa-miR-3945 1 0 0
chr1:168696146|168696498 hsa-miR-3135b 1 1 0
chr1:168696146|168696498 hsa-miR-4487 1 0 0
chr1:168696146|168696498 hsa-miR-4534 1 0 0
chr1:168696146|168696498 hsa-miR-4651 1 0 0
chr1:168696146|168696498 hsa-miR-4663 1 0 0
chr1:168696146|168696498 hsa-miR-4688 1 0 0
chr1:168696146|168696498 hsa-miR-4706 1 0 0
chr1:168696146|168696498 hsa-miR-4739 1 0 0
chr1:168696146|168696498 hsa-miR-5090 1 0 0
chr1:168696146|168696498 hsa-miR-5194 1 0 0
chr1:168696146|168696498 hsa-miR-5698 1 1 0
chr1:168696146|168696498 hsa-miR-6133 1 0 0
chr1:168696146|168696498 hsa-miR-6165 1 0 0
chr1:168696146|168696498 hsa-miR-7703 1 1 0
chr1:168696146|168696498 hsa-miR-8085 1 1 0
chr1:168696146|168696498 hsa-miR-12114 1 0 0
chr1:168696146|168696498 hsa-miR-12115 1 1 0
chr1:168696146|168696498 hsa-miR-4433b-3p 1 0 0
chr1:168696146|168696498 hsa-miR-93-3p 1 0 0
chr1:168696146|168696498 hsa-miR-139-5p 0 1 0
chr1:168696146|168696498 hsa-miR-6734-5p 1 0 0
chr1:168696146|168696498 hsa-miR-4433a-3p 1 0 0
chr1:168696146|168696498 hsa-miR-6765-5p 1 0 0
chr1:168696146|168696498 hsa-miR-133a-5p 0 1 0
chr1:168696146|168696498 hsa-miR-3150a-3p 1 0 0
chr1:168696146|168696498 hsa-miR-7106-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6825-5p 1 1 0
chr1:168696146|168696498 hsa-miR-106a-3p 0 1 0
chr1:168696146|168696498 hsa-miR-6799-5p 1 0 0
chr1:168696146|168696498 hsa-miR-139-3p 1 0 0
chr1:168696146|168696498 hsa-miR-3663-3p 1 1 0
chr1:168696146|168696498 hsa-miR-6515-5p 1 1 0
chr1:168696146|168696498 hsa-miR-6880-5p 1 0 0
chr1:168696146|168696498 hsa-miR-7847-3p 1 1 0
chr1:168696146|168696498 hsa-miR-4695-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6820-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6721-5p 1 0 0
chr1:168696146|168696498 hsa-miR-197-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6873-3p 0 1 0
chr1:168696146|168696498 hsa-miR-6841-3p 0 1 0
chr1:168696146|168696498 hsa-miR-6742-5p 1 0 0
chr1:168696146|168696498 hsa-miR-3180-3p 1 0 0
chr1:168696146|168696498 hsa-miR-6748-5p 1 0 0
chr1:168696146|168696498 hsa-miR-3190-3p 1 0 0
chr1:168696146|168696498 hsa-miR-4753-3p 1 1 0
chr1:168696146|168696498 hsa-miR-6760-5p 1 0 0
chr1:168696146|168696498 hsa-miR-2467-3p 1 0 0
chr1:168696146|168696498 hsa-miR-6815-3p 1 1 0
chr1:168696146|168696498 hsa-miR-939-3p 1 1 0
chr1:168696146|168696498 hsa-miR-7109-5p 1 0 0
chr1:168696146|168696498 hsa-miR-1908-5p 1 0 0
chr1:168696146|168696498 hsa-miR-1228-5p 1 0 0
chr1:168696146|168696498 hsa-miR-92b-5p 1 0 0
chr1:168696146|168696498 hsa-miR-3202 1 0 0
chr1:168696146|168696498 hsa-miR-6809-3p 0 1 0
chr1:168696146|168696498 hsa-miR-7111-3p 1 1 0
chr1:168696146|168696498 hsa-miR-6830-3p 0 1 0
chr1:168696146|168696498 hsa-miR-149-3p 1 0 0
chr1:168696146|168696498 hsa-miR-6824-5p 1 0 0
chr1:168696146|168696498 hsa-miR-2276-3p 0 1 0
chr1:168696146|168696498 hsa-miR-516b-5p 0 1 0
chr1:168696146|168696498 hsa-miR-423-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6743-3p 1 0 0
chr1:168696146|168696498 hsa-miR-6828-3p 1 0 0
chr1:168696146|168696498 hsa-miR-5088-3p 0 1 0
chr1:168696146|168696498 hsa-miR-6738-3p 1 0 0
chr1:168696146|168696498 hsa-miR-3124-3p 0 1 0
chr1:168696146|168696498 hsa-miR-670-5p 0 1 0
chr1:168696146|168696498 hsa-miR-1298-3p 1 0 0
chr1:168696146|168696498 hsa-miR-4766-3p 0 1 0
chr1:168696146|168696498 hsa-miR-5580-3p 0 1 0
chr1:168696146|168696498 hsa-miR-1233-5p 1 0 0
chr1:168696146|168696498 hsa-miR-4763-3p 1 0 0
chr1:168696146|168696498 hsa-miR-6778-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6816-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6870-5p 1 0 0
chr1:168696146|168696498 hsa-miR-1343-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6737-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6743-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6756-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6803-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6819-5p 1 0 0
chr1:168696146|168696498 hsa-miR-11181-3p 1 1 0
chr1:168696146|168696498 hsa-miR-1249-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6751-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6779-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6780a-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6797-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6808-5p 1 0 0
chr1:168696146|168696498 hsa-miR-7111-5p 1 1 0
chr1:168696146|168696498 hsa-miR-3620-5p 1 0 0
chr1:168696146|168696498 hsa-miR-4728-5p 1 1 0
chr1:168696146|168696498 hsa-miR-5196-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6780b-5p 1 0 0
chr1:168696146|168696498 hsa-miR-328-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6735-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6738-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6795-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6883-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6887-5p 1 1 0
chr1:168696146|168696498 hsa-miR-4723-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6831-5p 1 1 0
chr1:168696146|168696498 hsa-miR-939-5p 1 0 0
chr1:168696146|168696498 hsa-miR-1910-3p 0 1 0
chr1:168696146|168696498 hsa-miR-6511a-5p 1 1 0
chr1:168696146|168696498 hsa-miR-6731-5p 1 1 0
chr1:168696146|168696498 hsa-miR-6856-5p 0 1 0
chr1:168696146|168696498 hsa-miR-1914-3p 1 0 0
chr1:168696146|168696498 hsa-miR-4716-3p 1 0 0
chr1:168696146|168696498 hsa-miR-6766-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6785-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6849-5p 1 0 0
chr1:168696146|168696498 hsa-miR-6893-3p 1 0 0
chr1:168696146|168696498 hsa-miR-320a-3p 1 0 0
chr1:168696146|168696498 hsa-miR-320b 1 0 0
chr1:168696146|168696498 hsa-miR-6783-3p 1 1 0
chr1:168696146|168696498 hsa-miR-125b-5p 0 1 0
chr1:168696146|168696498 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:168696146|168696498
ORF Type ORF1
Protein Length 81
Nucleotide Length 246
Protein Sequence MQLVLQKPGCKHAHCICGVQGSHHQSYKAVAMKHVKSEKHGLIVDFIRSVILVRKAQEVGIAVTSSGRRKESSRNFYRRSN
Nucleotide Sequence CTGCAGCTGGTGCTCCAGAAGCCCGGCTGTAAGCATGCGCACTGTATATGTGGTGTGCAAGGAAGCCATCATCAGTCATATAAAGCAGTTGCTATGAAACATGTGAAAAGTGAGAAACATGGTTTAATTGTGGATTTTATTAGAAGTGTGATACTAGTCAGAAAGGCCCAGGAAGTTGGCATTGCAGTTACCAGCTCAGGGAGAAGGAAAGAGAGCAGCAGAAACTTCTATAGGAGATCCAACTGA
CircID chr1:168696146|168696498
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MALQLPAQGEGKRAAETSIGDPTDVNICGH
Nucleotide Sequence TTGGCATTGCAGTTACCAGCTCAGGGAGAAGGAAAGAGAGCAGCAGAAACTTCTATAGGAGATCCAACTGATGTTAACATATGTGGACAC
CircID chr1:168696146|168696498
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MHLSSSSASPLHYAELAVHSAVKSSSQAAAGAPEARL
Nucleotide Sequence CTGCACCTCTCCTCCAGTTCTGCCTCTCCCCTCCACTATGCTGAACTTGCAGTTCATTCTGCAGTAAAAAGCAGTAGCCAGGCTGCAGCTGGTGCTCCAGAAGCCCGGCTGTAA
CircID chr1:168696146|168696498
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MLLSFLLPELVTAMPTSWAFLTSITLLIKSTIKPCFSLFTCFIATALYD
Nucleotide Sequence CTGCTGCTCTCTTTCCTTCTCCCTGAGCTGGTAACTGCAATGCCAACTTCCTGGGCCTTTCTGACTAGTATCACACTTCTAATAAAATCCACAATTAAACCATGTTTCTCACTTTTCACATGTTTCATAGCAACTGCTTTATATGACTGA
CircID chr1:168696146|168696498
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MATAFYCRMNCKFSIVEGRGRTGGEVQ
Nucleotide Sequence CTGGCTACTGCTTTTTACTGCAGAATGAACTGCAAGTTCAGCATAGTGGAGGGGAGAGGCAGAACTGGAGGAGAGGTGCAGTGA
CircID chr1:168696146|168696498
ORF Type ORF6
Protein Length 38
Nucleotide Length 117
Protein Sequence MLYMTDDGFLAHHIYSAHAYSRASGAPAAAWLLLFTAE
Nucleotide Sequence CTGCTTTATATGACTGATGATGGCTTCCTTGCACACCACATATACAGTGCGCATGCTTACAGCCGGGCTTCTGGAGCACCAGCTGCAGCCTGGCTACTGCTTTTTACTGCAGAATGA
CircID chr1:168696146|168696498
ORF Type ORF7
Protein Length 54
Nucleotide Length 162
Protein Sequence MMMASLHTTYTVRMLTAGLLEHQLQPGYCFLLQNELQVQHSGGERQNWRRGAVK
Nucleotide Sequence CTGATGATGGCTTCCTTGCACACCACATATACAGTGCGCATGCTTACAGCCGGGCTTCTGGAGCACCAGCTGCAGCCTGGCTACTGCTTTTTACTGCAGAATGAACTGCAAGTTCAGCATAGTGGAGGGGAGAGGCAGAACTGGAGGAGAGGTGCAGTGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab