CircRNA Information

General Information
circRNA Basic Information
CircID chr1:169859798|169859962
Strand +
CircType exon
Host Gene ENSG00000239494.2;
Algorism CIRI2;
Sequence CTGCTCCATTTCCAACCTGGGCTGGTTCACCCCTCTTTAGGCAACCTGGTAGTCCCCAGCTCCTGGGAGGTTACTATATTGATGCTGAATTTAGTGCAGACACCCAATCAGCATAGCACACTACAGCCCAGAACTCCTGGGCTCAAGTGATCCACATGCCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:169859798|169859962 hsa-miR-346 0 0 1
chr1:169859798|169859962 hsa-miR-583 0 0 1
chr1:169859798|169859962 hsa-miR-609 0 0 1
chr1:169859798|169859962 hsa-miR-612 0 0 1
chr1:169859798|169859962 hsa-miR-632 0 0 1
chr1:169859798|169859962 hsa-miR-648 0 0 1
chr1:169859798|169859962 hsa-miR-802 0 0 1
chr1:169859798|169859962 hsa-miR-708-5p 0 0 1
chr1:169859798|169859962 hsa-miR-708-3p 0 0 1
chr1:169859798|169859962 hsa-miR-665 0 1 1
chr1:169859798|169859962 hsa-miR-1262 0 0 1
chr1:169859798|169859962 hsa-miR-1276 0 0 1
chr1:169859798|169859962 hsa-miR-1827 0 0 1
chr1:169859798|169859962 hsa-miR-1225-3p 0 0 1
chr1:169859798|169859962 hsa-miR-509-3p 0 0 1
chr1:169859798|169859962 hsa-miR-28-5p 0 0 1
chr1:169859798|169859962 hsa-miR-142-3p 0 0 1
chr1:169859798|169859962 hsa-miR-1233 0 0 1
chr1:169859798|169859962 hsa-miR-1285 0 0 1
chr1:169859798|169859962 hsa-miR-637 1 1 0
chr1:169859798|169859962 hsa-miR-762 1 0 0
chr1:169859798|169859962 hsa-miR-3135a 1 0 0
chr1:169859798|169859962 hsa-miR-1587 0 1 0
chr1:169859798|169859962 hsa-miR-4651 1 0 0
chr1:169859798|169859962 hsa-miR-5685 0 1 0
chr1:169859798|169859962 hsa-miR-6075 1 0 0
chr1:169859798|169859962 hsa-miR-8089 1 1 0
chr1:169859798|169859962 hsa-miR-4731-5p 0 1 0
chr1:169859798|169859962 hsa-miR-6840-3p 0 1 0
chr1:169859798|169859962 hsa-miR-6747-5p 1 0 0
chr1:169859798|169859962 hsa-miR-4433a-3p 0 1 0
chr1:169859798|169859962 hsa-miR-6765-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6720-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6854-5p 0 1 0
chr1:169859798|169859962 hsa-miR-6807-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6742-5p 1 0 0
chr1:169859798|169859962 hsa-miR-656-5p 1 1 0
chr1:169859798|169859962 hsa-miR-6782-5p 0 1 0
chr1:169859798|169859962 hsa-miR-4793-3p 0 1 0
chr1:169859798|169859962 hsa-miR-6874-5p 1 0 0
chr1:169859798|169859962 hsa-miR-5006-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6812-5p 1 0 0
chr1:169859798|169859962 hsa-miR-5001-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6726-5p 1 1 0
chr1:169859798|169859962 hsa-miR-6752-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6813-5p 1 1 0
chr1:169859798|169859962 hsa-miR-6842-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6851-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6722-3p 1 0 0
chr1:169859798|169859962 hsa-miR-6751-5p 1 0 0
chr1:169859798|169859962 hsa-miR-3620-5p 0 1 0
chr1:169859798|169859962 hsa-miR-6738-5p 1 1 0
chr1:169859798|169859962 hsa-miR-939-5p 1 0 0
chr1:169859798|169859962 hsa-miR-6773-5p 0 1 0
chr1:169859798|169859962 hsa-miR-1914-3p 1 0 0
chr1:169859798|169859962 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:169859798|169859962
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence LLHFQPGLVHPSLGNLVVPSSWEVTILMLNLVQTPNQHSTLQPRTPGLK
Nucleotide Sequence CTGCTCCATTTCCAACCTGGGCTGGTTCACCCCTCTTTAGGCAACCTGGTAGTCCCCAGCTCCTGGGAGGTTACTATATTGATGCTGAATTTAGTGCAGACACCCAATCAGCATAGCACACTACAGCCCAGAACTCCTGGGCTCAAGTGA
CircID chr1:169859798|169859962
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGVCTKFSINIVTSQELGTTRLPKEG
Nucleotide Sequence TTGGGTGTCTGCACTAAATTCAGCATCAATATAGTAACCTCCCAGGAGCTGGGGACTACCAGGTTGCCTAAAGAGGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab