CircRNA Information

General Information
circRNA Basic Information
CircID chr1:171523221|171532961
Strand +
CircType exon
Host Gene ENSG00000117523.15;
Algorism find_circ;CIRI2;DCC;
Sequence AGGCCTTCGAGGAAGAGGCCCACCTCCTTCATGGGCCTCTGAGCCTGAACGCCCATCCATTCTTAGTGCATCAGAACTGAAGGAGCTTGATAAATTTGATAACCTAGATGCTGAAGCTGATGAAGGTTGGGCAGGTAAGAGGCAAAATTAATTAAGTCCTTTAAATTGTTAGATGCTTTCAAGCAGCCAGTCTGAGTTTTCCTTAATTTAATAGGTGCTCAGATGGAAGTAGATTATACAGAGCAACTGAATTTCAGTGATGATGATGAACAAGGAAGTAACAGTCCTAAAGAGAATAACAGTGAGGATCAAGGTTCAAAAGCCTCTGAAAACAACGAAAACAAAAAAGAAACAGATGAAGTTTCCAACACTAAATCATCTTCCCAAATACCTGCCCAACCATCAGTAGCAAAAGTTCCCTATGGGAAAGGACCTTCATTTAATCAGGAACGTGGAACATCTTCACATCTGCCACCACCTCCAAAGTTGCTTGCACAGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:171523221|171532961 hsa-miR-205-5p 0 0 1
chr1:171523221|171532961 hsa-miR-205-3p 0 0 1
chr1:171523221|171532961 hsa-miR-130a-5p 0 0 1
chr1:171523221|171532961 hsa-miR-130a-3p 0 0 1
chr1:171523221|171532961 hsa-miR-301a-5p 0 0 1
chr1:171523221|171532961 hsa-miR-301a-3p 0 0 1
chr1:171523221|171532961 hsa-miR-130b-5p 0 0 1
chr1:171523221|171532961 hsa-miR-130b-3p 0 0 1
chr1:171523221|171532961 hsa-miR-493-5p 0 0 1
chr1:171523221|171532961 hsa-miR-493-3p 0 0 1
chr1:171523221|171532961 hsa-miR-577 0 0 1
chr1:171523221|171532961 hsa-miR-611 0 0 1
chr1:171523221|171532961 hsa-miR-454-5p 0 0 1
chr1:171523221|171532961 hsa-miR-454-3p 0 0 1
chr1:171523221|171532961 hsa-miR-708-5p 0 0 1
chr1:171523221|171532961 hsa-miR-708-3p 0 0 1
chr1:171523221|171532961 hsa-miR-301b-5p 0 0 1
chr1:171523221|171532961 hsa-miR-301b-3p 0 0 1
chr1:171523221|171532961 hsa-miR-1252-5p 0 0 1
chr1:171523221|171532961 hsa-miR-1252-3p 0 0 1
chr1:171523221|171532961 hsa-miR-127-5p 0 1 1
chr1:171523221|171532961 hsa-miR-1224-3p 0 1 1
chr1:171523221|171532961 hsa-miR-28-5p 0 0 1
chr1:171523221|171532961 hsa-miR-513a-3p 0 0 1
chr1:171523221|171532961 hsa-miR-151-5p 0 0 1
chr1:171523221|171532961 hsa-miR-1308 0 0 1
chr1:171523221|171532961 hsa-miR-765 1 0 0
chr1:171523221|171532961 hsa-miR-3147 0 1 0
chr1:171523221|171532961 hsa-miR-3921 0 1 0
chr1:171523221|171532961 hsa-miR-4502 0 1 0
chr1:171523221|171532961 hsa-miR-4518 1 0 0
chr1:171523221|171532961 hsa-miR-4533 1 0 0
chr1:171523221|171532961 hsa-miR-4538 1 0 0
chr1:171523221|171532961 hsa-miR-6077 0 1 0
chr1:171523221|171532961 hsa-miR-6127 1 0 0
chr1:171523221|171532961 hsa-miR-8075 0 1 0
chr1:171523221|171532961 hsa-miR-12119 1 0 0
chr1:171523221|171532961 hsa-miR-4687-3p 1 0 0
chr1:171523221|171532961 hsa-miR-4711-5p 0 1 0
chr1:171523221|171532961 hsa-miR-2115-3p 0 1 0
chr1:171523221|171532961 hsa-miR-1199-5p 0 1 0
chr1:171523221|171532961 hsa-miR-4757-5p 0 1 0
chr1:171523221|171532961 hsa-miR-6829-3p 0 1 0
chr1:171523221|171532961 hsa-miR-6884-5p 0 1 0
chr1:171523221|171532961 hsa-miR-217-5p 1 0 0
chr1:171523221|171532961 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:171523221|171532961
ORF Type ORF1
Protein Length 93
Nucleotide Length 279
Protein Sequence MEVDYTEQLNFSDDDEQGSNSPKENNSEDQGSKASENNENKKETDEVSNTKSSSQIPAQPSVAKVPYGKGPSFNQERGTSSHLPPPPKLLAQQ
Nucleotide Sequence ATGGAAGTAGATTATACAGAGCAACTGAATTTCAGTGATGATGATGAACAAGGAAGTAACAGTCCTAAAGAGAATAACAGTGAGGATCAAGGTTCAAAAGCCTCTGAAAACAACGAAAACAAAAAAGAAACAGATGAAGTTTCCAACACTAAATCATCTTCCCAAATACCTGCCCAACCATCAGTAGCAAAAGTTCCCTATGGGAAAGGACCTTCATTTAATCAGGAACGTGGAACATCTTCACATCTGCCACCACCTCCAAAGTTGCTTGCACAGCAG
CircID chr1:171523221|171532961
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MMMNKEVTVLKRITVRIKVQKPLKTTKTKKKQMKFPTLNHLPKYLPNHQ*
Nucleotide Sequence ATGATGATGAACAAGGAAGTAACAGTCCTAAAGAGAATAACAGTGAGGATCAAGGTTCAAAAGCCTCTGAAAACAACGAAAACAAAAAAGAAACAGATGAAGTTTCCAACACTAAATCATCTTCCCAAATACCTGCCCAACCATCAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:171523221|171532961 RBM5 0 1 0
chr1:171523221|171532961 U2AF2 37 13 8
chr1:171523221|171532961 MOV10 0 21 1
chr1:171523221|171532961 ELAVL1 26 27 10
chr1:171523221|171532961 PUS1 0 1 0
chr1:171523221|171532961 SRRM4 1 1 0
chr1:171523221|171532961 FKBP4 0 0 1
chr1:171523221|171532961 PRPF8 6 0 0
chr1:171523221|171532961 RPS5 0 1 0
chr1:171523221|171532961 UPF1 3 1 0
chr1:171523221|171532961 ATXN2 0 2 0
chr1:171523221|171532961 TAF15 0 2 0
chr1:171523221|171532961 CAPRIN1 1 0 0
chr1:171523221|171532961 FMR1 3 0 6
chr1:171523221|171532961 CPSF6 2 0 2
chr1:171523221|171532961 NUDT21 2 2 0
chr1:171523221|171532961 CSTF2 8 4 0
chr1:171523221|171532961 CPSF3 1 0 0
chr1:171523221|171532961 FUS 5 4 0
chr1:171523221|171532961 DGCR8 2 1 2
chr1:171523221|171532961 SRSF7 1 0 4
chr1:171523221|171532961 SRSF1 3 1 10
chr1:171523221|171532961 NOP58 3 3 6
chr1:171523221|171532961 SRSF3 1 1 0
chr1:171523221|171532961 U2AF1 4 0 5
chr1:171523221|171532961 RC3H1 0 2 0
chr1:171523221|171532961 PUM2 0 1 0
chr1:171523221|171532961 NOP56 1 2 1
chr1:171523221|171532961 SRSF9 1 0 0
chr1:171523221|171532961 HNRNPU 1 0 0
chr1:171523221|171532961 DDX54 7 0 17
chr1:171523221|171532961 RBM10 8 3 0
chr1:171523221|171532961 HNRNPA2B1 0 0 1
chr1:171523221|171532961 SF3A3 1 0 0
chr1:171523221|171532961 FIP1L1 1 2 1
chr1:171523221|171532961 PTBP1 5 8 2
chr1:171523221|171532961 HNRNPC 58 62 14
chr1:171523221|171532961 HNRNPD 2 0 0
chr1:171523221|171532961 TRA2A 0 1 4
chr1:171523221|171532961 HNRNPF 0 1 0
chr1:171523221|171532961 KHSRP 4 3 0
chr1:171523221|171532961 ZNF184 0 0 4
chr1:171523221|171532961 HNRNPA1 17 5 0
chr1:171523221|171532961 ZC3H7B 2 2 0
chr1:171523221|171532961 LARP4B 0 2 0
chr1:171523221|171532961 SMNDC1 2 1 1
chr1:171523221|171532961 MSI2 0 0 1
chr1:171523221|171532961 ACIN1 0 2 7
chr1:171523221|171532961 LIN28B 5 2 7
chr1:171523221|171532961 LIN28A 0 0 2
chr1:171523221|171532961 RANGAP1 0 0 1
chr1:171523221|171532961 FXR1 2 0 3
chr1:171523221|171532961 FXR2 4 1 2
chr1:171523221|171532961 IGF2BP1 0 1 6
chr1:171523221|171532961 IGF2BP3 1 1 6
chr1:171523221|171532961 IGF2BP2 7 5 13
chr1:171523221|171532961 NPM1 0 1 0
chr1:171523221|171532961 STAU1 0 5 0
chr1:171523221|171532961 TARDBP 13 1 1
chr1:171523221|171532961 YTHDC1 1 3 2
chr1:171523221|171532961 BUD13 4 0 6
chr1:171523221|171532961 RBFOX2 1 0 1
chr1:171523221|171532961 RBM47 2 5 3
chr1:171523221|171532961 EIF4G2 1 0 1
chr1:171523221|171532961 METTL3 1 0 0
chr1:171523221|171532961 CSTF2T 2 0 4
chr1:171523221|171532961 BCCIP 0 0 1
chr1:171523221|171532961 YWHAG 0 0 2
chr1:171523221|171532961 TARBP2 0 0 1
chr1:171523221|171532961 CPSF7 0 3 0
chr1:171523221|171532961 TIAL1 0 2 0
chr1:171523221|171532961 TIA1 0 2 0
chr1:171523221|171532961 FBL 3 3 4
chr1:171523221|171532961 AGO1 1 0 0
chr1:171523221|171532961 EWSR1 0 3 0
chr1:171523221|171532961 EIF4A3 3 4 7
chr1:171523221|171532961 AGO2 2 5 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab