CircRNA Information

General Information
circRNA Basic Information
CircID chr1:172588760|172602787
Strand +
CircType exon
Host Gene ENSG00000094975.13;
Algorism find_circ;CIRI2;DCC;
Sequence GTATGTAACCACTGAAGTACACACACATGACATGGAGCCGTCAACACCAGATACTCCAAAAGAGAGTCCCATTGTACAGTTAGTTCAAGAGGAGGAAGAGGAGGCAAGTCCATCTACAGTGACCCTTCTGGGCAGCGGTGAACAGGAAGATGAATCATCACCCTGGTTTGAGTCAGAGACACAAATATTTTGCAGTGAACTGACCACAATTTGTTGTATTTCTAGTTTTTCAGAATACATATATAAATGGTGTTCAGTTAGAGTTGCTCTTTATCGGCAGCGCAGCCGAACTGCTTTGAGTAAAGGAAAAGATTATCTTGTGTTAGCTCAACCACCCTTACTACTTCCTGCGGAATCAGTAGATGTTTCAGTATTGCAACCTCTGAGTGGAGAATTGGAAAATACGAATATAGAAAGGGAAGCTGAAACTGTTGTTCTGGGTGATTTAAGTAGTAGTATGCACCAGGATGACTTGGTGAATCACACTGTAGATGCAGTTGAACTTGAACCAAGCCATTCTCAAACTCTTTCTCAGTCTCTTCTTTTAGATATTACCCCAGAAATCAATCCCTTGCCTAAAATAGAAGTATCTGAGTCTGTTGAATATGAGGCAGGACATATACCATCACCAGTGATTCCCCAAGAGAGTTCTGTTGAGATCGATAATGAAACAGAACAAAAGTCTGAGAGCTTTAGTTCTATAGAGAAACCATCTATTACCTATGAAACAAATAAAGTTAATGAGTTAATGGATAATATTATAAAAGAAGATGTGAACTCCATGCAAATTTTCACAAAGCTGTCTGAAACAATAGTGCCACCAATAAATACAGCCACTGTACCCGACAATGAAGATGGGGAAGCCAAAATGAATATAGCTGACACAGCAAAGCAAACTTTGATTTCTGTTGTGGATTCTTCTTCATTACCTGAAGTAAAAGAAGAAGAACAGTCTCCAGAAGATGCCCTTTTGAGAGGGTTACAGAGGACAGCTACAGATTTTTATGCTGAATTGCAAAATTCTACAGATCTAGGATATGCTAATGGAAATCTTGTACATGGATCAAACCAAAAGGAGTCAGTATTTATGAGACTTAATAATCGTATTAAAGCCTTAGAAGTTAACATGTCTCTCAGTGGTCGCTATCTGGAGGAGCTTAGCCAAAGGTACCGAAAACAAATGGAAGAAATGCAAAAGGCTTTCAATAAAACAATCGTGAAACTTCAGAATACTTCAAGAATAGCAGAGGAGCAGGATCAGCGGCAAACTGAAGCCATCCAGTTGCTACAGGCACAGCTGACCAACATGACACAGCTTGTTTCAAATTTATCAGCAACAGTAGCAGAATTGAAACGGGAGGTTTCAGATCGACAAAGCTATCTTGTCATATCTTTGGTTCTTTGTGTTGTCTTGGGACTGATGCTTTGTATGCAGCGTTGTCGAAATACTTCTCAATTTGATGGAGATTATATTTCAAAACTTCCTAAAAGTAATCAGTATCCAAGCCCTAAAAGGTGTTTCTCTTCCTATGATGATATGAATTTGAAAAGAAGAACTTCATTCCCACTCATGAGATCCAAGTCTCTACAGTTAACTGGCAAAGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:172588760|172602787
ORF Type ORF1
Protein Length 525
Nucleotide Length 1575
Protein Sequence MEPSTPDTPKESPIVQLVQEEEEEASPSTVTLLGSGEQEDESSPWFESETQIFCSELTTICCISSFSEYIYKWCSVRVALYRQRSRTALSKGKDYLVLAQPPLLLPAESVDVSVLQPLSGELENTNIEREAETVVLGDLSSSMHQDDLVNHTVDAVELEPSHSQTLSQSLLLDITPEINPLPKIEVSESVEYEAGHIPSPVIPQESSVEIDNETEQKSESFSSIEKPSITYETNKVNELMDNIIKEDVNSMQIFTKLSETIVPPINTATVPDNEDGEAKMNIADTAKQTLISVVDSSSLPEVKEEEQSPEDALLRGLQRTATDFYAELQNSTDLGYANGNLVHGSNQKESVFMRLNNRIKALEVNMSLSGRYLEELSQRYRKQMEEMQKAFNKTIVKLQNTSRIAEEQDQRQTEAIQLLQAQLTNMTQLVSNLSATVAELKREVSDRQSYLVISLVLCVVLGLMLCMQRCRNTSQFDGDYISKLPKSNQYPSPKRCFSSYDDMNLKRRTSFPLMRSKSLQLTGKE
Nucleotide Sequence ATGGAGCCGTCAACACCAGATACTCCAAAAGAGAGTCCCATTGTACAGTTAGTTCAAGAGGAGGAAGAGGAGGCAAGTCCATCTACAGTGACCCTTCTGGGCAGCGGTGAACAGGAAGATGAATCATCACCCTGGTTTGAGTCAGAGACACAAATATTTTGCAGTGAACTGACCACAATTTGTTGTATTTCTAGTTTTTCAGAATACATATATAAATGGTGTTCAGTTAGAGTTGCTCTTTATCGGCAGCGCAGCCGAACTGCTTTGAGTAAAGGAAAAGATTATCTTGTGTTAGCTCAACCACCCTTACTACTTCCTGCGGAATCAGTAGATGTTTCAGTATTGCAACCTCTGAGTGGAGAATTGGAAAATACGAATATAGAAAGGGAAGCTGAAACTGTTGTTCTGGGTGATTTAAGTAGTAGTATGCACCAGGATGACTTGGTGAATCACACTGTAGATGCAGTTGAACTTGAACCAAGCCATTCTCAAACTCTTTCTCAGTCTCTTCTTTTAGATATTACCCCAGAAATCAATCCCTTGCCTAAAATAGAAGTATCTGAGTCTGTTGAATATGAGGCAGGACATATACCATCACCAGTGATTCCCCAAGAGAGTTCTGTTGAGATCGATAATGAAACAGAACAAAAGTCTGAGAGCTTTAGTTCTATAGAGAAACCATCTATTACCTATGAAACAAATAAAGTTAATGAGTTAATGGATAATATTATAAAAGAAGATGTGAACTCCATGCAAATTTTCACAAAGCTGTCTGAAACAATAGTGCCACCAATAAATACAGCCACTGTACCCGACAATGAAGATGGGGAAGCCAAAATGAATATAGCTGACACAGCAAAGCAAACTTTGATTTCTGTTGTGGATTCTTCTTCATTACCTGAAGTAAAAGAAGAAGAACAGTCTCCAGAAGATGCCCTTTTGAGAGGGTTACAGAGGACAGCTACAGATTTTTATGCTGAATTGCAAAATTCTACAGATCTAGGATATGCTAATGGAAATCTTGTACATGGATCAAACCAAAAGGAGTCAGTATTTATGAGACTTAATAATCGTATTAAAGCCTTAGAAGTTAACATGTCTCTCAGTGGTCGCTATCTGGAGGAGCTTAGCCAAAGGTACCGAAAACAAATGGAAGAAATGCAAAAGGCTTTCAATAAAACAATCGTGAAACTTCAGAATACTTCAAGAATAGCAGAGGAGCAGGATCAGCGGCAAACTGAAGCCATCCAGTTGCTACAGGCACAGCTGACCAACATGACACAGCTTGTTTCAAATTTATCAGCAACAGTAGCAGAATTGAAACGGGAGGTTTCAGATCGACAAAGCTATCTTGTCATATCTTTGGTTCTTTGTGTTGTCTTGGGACTGATGCTTTGTATGCAGCGTTGTCGAAATACTTCTCAATTTGATGGAGATTATATTTCAAAACTTCCTAAAAGTAATCAGTATCCAAGCCCTAAAAGGTGTTTCTCTTCCTATGATGATATGAATTTGAAAAGAAGAACTTCATTCCCACTCATGAGATCCAAGTCTCTACAGTTAACTGGCAAAGAA
CircID chr1:172588760|172602787
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MYSEKLEIQQIVVSSLQNICVSDSNQGDDSSSCSPLPRRVTVDGLASSSSS*
Nucleotide Sequence ATGTATTCTGAAAAACTAGAAATACAACAAATTGTGGTCAGTTCACTGCAAAATATTTGTGTCTCTGACTCAAACCAGGGTGATGATTCATCTTCCTGTTCACCGCTGCCCAGAAGGGTCACTGTAGATGGACTTGCCTCCTCTTCCTCCTCTTGA
CircID chr1:172588760|172602787
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MKKNPQQKSKFALLCQLYSFWLPHLHCRVQWLYLLVALLFQTAL*
Nucleotide Sequence ATGAAGAAGAATCCACAACAGAAATCAAAGTTTGCTTTGCTGTGTCAGCTATATTCATTTTGGCTTCCCCATCTTCATTGTCGGGTACAGTGGCTGTATTTATTGGTGGCACTATTGTTTCAGACAGCTTTGTGA
CircID chr1:172588760|172602787
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MLTSKALIRLLSLINTDSFWFDPCTRFPLAYPRSVEFCNSA*
Nucleotide Sequence ATGTTAACTTCTAAGGCTTTAATACGATTATTAAGTCTCATAAATACTGACTCCTTTTGGTTTGATCCATGTACAAGATTTCCATTAGCATATCCTAGATCTGTAGAATTTTGCAATTCAGCATAA
CircID chr1:172588760|172602787
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MDLPPLPPLELTVQWDSLLEYLVLTAPCHVCVLQWLH
Nucleotide Sequence ATGGACTTGCCTCCTCTTCCTCCTCTTGAACTAACTGTACAATGGGACTCTCTTTTGGAGTATCTGGTGTTGACGGCTCCATGTCATGTGTGTGTACTTCAGTGGTTACAT
CircID chr1:172588760|172602787
ORF Type ORF6
Protein Length 85
Nucleotide Length 255
Protein Sequence LVQVQLHLQCDSPSHPGAYYYLNHPEQQFQLPFLYSYFPILHSEVAILKHLLIPQEVVRVVELTQDNLFLYSKQFGCAADKEQL*
Nucleotide Sequence TTGGTTCAAGTTCAACTGCATCTACAGTGTGATTCACCAAGTCATCCTGGTGCATACTACTACTTAAATCACCCAGAACAACAGTTTCAGCTTCCCTTTCTATATTCGTATTTTCCAATTCTCCACTCAGAGGTTGCAATACTGAAACATCTACTGATTCCGCAGGAAGTAGTAAGGGTGGTTGAGCTAACACAAGATAATCTTTTCCTTTACTCAAAGCAGTTCGGCTGCGCTGCCGATAAAGAGCAACTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:172588760|172602787 NOP56 0 1 2
chr1:172588760|172602787 MOV10 0 1 1
chr1:172588760|172602787 ELAVL1 5 2 8
chr1:172588760|172602787 SF3B1 1 0 0
chr1:172588760|172602787 CELF2 2 0 2
chr1:172588760|172602787 PRPF8 3 0 2
chr1:172588760|172602787 UPF1 0 0 1
chr1:172588760|172602787 ZNF622 1 0 0
chr1:172588760|172602787 TAF15 1 0 0
chr1:172588760|172602787 FMR1 0 0 8
chr1:172588760|172602787 NUDT21 2 0 0
chr1:172588760|172602787 TIA1 0 1 0
chr1:172588760|172602787 RBM15B 2 0 0
chr1:172588760|172602787 FUS 1 2 1
chr1:172588760|172602787 CPSF7 3 0 0
chr1:172588760|172602787 SRSF1 1 0 5
chr1:172588760|172602787 NOP58 1 2 9
chr1:172588760|172602787 SRSF3 1 1 0
chr1:172588760|172602787 U2AF1 0 1 1
chr1:172588760|172602787 U2AF2 2 9 3
chr1:172588760|172602787 SRSF9 0 0 2
chr1:172588760|172602787 DDX54 0 2 33
chr1:172588760|172602787 GRWD1 1 0 0
chr1:172588760|172602787 HNRNPL 1 0 0
chr1:172588760|172602787 MSI2 0 0 1
chr1:172588760|172602787 FIP1L1 1 1 0
chr1:172588760|172602787 PTBP1 0 0 1
chr1:172588760|172602787 HNRNPC 7 6 3
chr1:172588760|172602787 TRA2A 0 0 1
chr1:172588760|172602787 ZNF184 0 0 1
chr1:172588760|172602787 RBFOX2 1 0 0
chr1:172588760|172602787 DDX3X 4 0 0
chr1:172588760|172602787 AGO2 0 3 6
chr1:172588760|172602787 LARP7 0 0 1
chr1:172588760|172602787 SMNDC1 0 0 1
chr1:172588760|172602787 AUH 0 0 2
chr1:172588760|172602787 HNRNPA1 1 1 0
chr1:172588760|172602787 LIN28B 0 0 6
chr1:172588760|172602787 LIN28A 0 0 3
chr1:172588760|172602787 RANGAP1 0 0 1
chr1:172588760|172602787 FXR1 0 0 1
chr1:172588760|172602787 FXR2 0 0 1
chr1:172588760|172602787 SND1 0 0 1
chr1:172588760|172602787 IGF2BP1 3 0 9
chr1:172588760|172602787 IGF2BP3 0 0 8
chr1:172588760|172602787 IGF2BP2 0 2 21
chr1:172588760|172602787 TARDBP 8 4 0
chr1:172588760|172602787 QKI 0 1 0
chr1:172588760|172602787 BUD13 1 0 1
chr1:172588760|172602787 KHSRP 3 0 0
chr1:172588760|172602787 RBM47 2 0 6
chr1:172588760|172602787 SLTM 0 0 1
chr1:172588760|172602787 DDX24 1 0 0
chr1:172588760|172602787 CSTF2T 1 2 6
chr1:172588760|172602787 CSTF2 0 3 1
chr1:172588760|172602787 RBM27 0 1 0
chr1:172588760|172602787 RBM22 1 1 0
chr1:172588760|172602787 WDR33 0 0 1
chr1:172588760|172602787 DKC1 0 0 1
chr1:172588760|172602787 AIFM1 0 0 1
chr1:172588760|172602787 ATXN2 2 1 0
chr1:172588760|172602787 EIF4A3 3 1 14
chr1:172588760|172602787 FBL 0 1 4
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab