CircRNA Information

General Information
circRNA Basic Information
CircID chr1:17408103|17408291
Strand -
CircType exon
Host Gene ENSG00000179051.12;
Algorism CIRI2;
Sequence CCCGAGTCTCAGCAACAGGACGGCCCGCGCGAGGCAGGATCCAGGCGGGGGGGAGAAAAAGAGACCAAAGCACAAGGCGATCGAGGCTGGCACAGAAAGGGCTGATCCTTCTTGCAAGGACTGGAGAATGCACTTGACTGCTGGCTGGTCCATCTCTTAATTGGCGAGTGCGCGTGACAAGGCTCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:17408103|17408291 hsa-miR-133b 0 0 1
chr1:17408103|17408291 hsa-miR-636 1 0 1
chr1:17408103|17408291 hsa-miR-766-5p 0 0 1
chr1:17408103|17408291 hsa-miR-766-3p 0 0 1
chr1:17408103|17408291 hsa-miR-1227-5p 0 0 1
chr1:17408103|17408291 hsa-miR-1227-3p 0 0 1
chr1:17408103|17408291 hsa-miR-1202 0 0 1
chr1:17408103|17408291 hsa-miR-502-5p 0 0 1
chr1:17408103|17408291 hsa-miR-628-5p 0 0 1
chr1:17408103|17408291 hsa-miR-519b-3p 0 0 1
chr1:17408103|17408291 hsa-miR-519c-3p 0 0 1
chr1:17408103|17408291 hsa-miR-515-5p 0 0 1
chr1:17408103|17408291 hsa-miR-9 0 0 1
chr1:17408103|17408291 hsa-miR-218 0 0 1
chr1:17408103|17408291 hsa-miR-1254 0 0 1
chr1:17408103|17408291 hsa-miR-129-3p 0 0 1
chr1:17408103|17408291 hsa-miR-133a 0 0 1
chr1:17408103|17408291 hsa-miR-519a 0 0 1
chr1:17408103|17408291 hsa-miR-661 1 0 0
chr1:17408103|17408291 hsa-miR-1470 1 0 0
chr1:17408103|17408291 hsa-miR-1913 1 0 0
chr1:17408103|17408291 hsa-miR-718 1 0 0
chr1:17408103|17408291 hsa-miR-4312 1 0 0
chr1:17408103|17408291 hsa-miR-4469 1 0 0
chr1:17408103|17408291 hsa-miR-3972 1 0 0
chr1:17408103|17408291 hsa-miR-4741 1 0 0
chr1:17408103|17408291 hsa-miR-9901 1 0 0
chr1:17408103|17408291 hsa-miR-6749-3p 1 0 0
chr1:17408103|17408291 hsa-miR-128-1-5p 1 0 0
chr1:17408103|17408291 hsa-miR-6879-3p 1 0 0
chr1:17408103|17408291 hsa-miR-4665-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6875-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6849-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6726-3p 1 0 0
chr1:17408103|17408291 hsa-miR-1915-5p 1 0 0
chr1:17408103|17408291 hsa-miR-6832-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6845-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6858-3p 1 0 0
chr1:17408103|17408291 hsa-miR-1908-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6894-3p 1 0 0
chr1:17408103|17408291 hsa-miR-4640-5p 1 0 0
chr1:17408103|17408291 hsa-miR-7113-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6830-3p 1 0 0
chr1:17408103|17408291 hsa-miR-5196-3p 1 0 0
chr1:17408103|17408291 hsa-miR-4640-3p 1 0 0
chr1:17408103|17408291 hsa-miR-1236-3p 1 0 0
chr1:17408103|17408291 hsa-miR-1910-5p 1 0 0
chr1:17408103|17408291 hsa-miR-6869-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6872-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6880-3p 1 0 0
chr1:17408103|17408291 hsa-miR-3184-3p 1 0 0
chr1:17408103|17408291 hsa-miR-3173-5p 1 0 0
chr1:17408103|17408291 hsa-miR-6877-3p 1 0 0
chr1:17408103|17408291 hsa-miR-7107-3p 1 0 0
chr1:17408103|17408291 hsa-miR-10401-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6819-3p 1 0 0
chr1:17408103|17408291 hsa-miR-3150b-5p 1 0 0
chr1:17408103|17408291 hsa-miR-6848-3p 1 0 0
chr1:17408103|17408291 hsa-miR-4690-3p 1 0 0
chr1:17408103|17408291 hsa-miR-6843-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:17408103|17408291
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MDQPAVKCILQSLQEGSALSVPASIALCFGLFFSPPPGSCLARAVLLLRLG
Nucleotide Sequence ATGGACCAGCCAGCAGTCAAGTGCATTCTCCAGTCCTTGCAAGAAGGATCAGCCCTTTCTGTGCCAGCCTCGATCGCCTTGTGCTTTGGTCTCTTTTTCTCCCCCCCGCCTGGATCCTGCCTCGCGCGGGCCGTCCTGTTGCTGAGACTCGGG
CircID chr1:17408103|17408291
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MCQPRSPCALVSFSPPRLDPASRGPSCC
Nucleotide Sequence CTGTGCCAGCCTCGATCGCCTTGTGCTTTGGTCTCTTTTTCTCCCCCCCGCCTGGATCCTGCCTCGCGCGGGCCGTCCTGTTGCTGA
CircID chr1:17408103|17408291
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence LSLVTRTRQLRDGPASSQVHSPVLARRISPFCASLDRLVLWSLFLPPAWILPRAGRPVAETR
Nucleotide Sequence CTGAGCCTTGTCACGCGCACTCGCCAATTAAGAGATGGACCAGCCAGCAGTCAAGTGCATTCTCCAGTCCTTGCAAGAAGGATCAGCCCTTTCTGTGCCAGCCTCGATCGCCTTGTGCTTTGGTCTCTTTTTCTCCCCCCCGCCTGGATCCTGCCTCGCGCGGGCCGTCCTGTTGCTGAGACTCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab