CircRNA Information

General Information
circRNA Basic Information
CircID chr1:175158505|175158681
Strand -
CircType exon
Host Gene ENSG00000235750.8;
Algorism CIRI2;
Sequence CTCTCCCCAGCCATCCATTCTAGGGGGACTGAGAGGTGGAGACAGGAAGGGCAGCTTGTCCTGGTGAGCAGTGGCAGTTGTGGGGAGATGTCTTCCACATCCCTGGGTTTGGTGCAGGCAGATGGCAAGTCATTCTGTTATGTGAAGGGCACAGCCAGAGGCCCCATGACAAACTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:175158505|175158681 hsa-miR-22-5p 0 0 1
chr1:175158505|175158681 hsa-miR-22-3p 0 0 1
chr1:175158505|175158681 hsa-miR-23a-5p 0 0 1
chr1:175158505|175158681 hsa-miR-23a-3p 0 0 1
chr1:175158505|175158681 hsa-miR-23b-5p 0 0 1
chr1:175158505|175158681 hsa-miR-23b-3p 0 0 1
chr1:175158505|175158681 hsa-miR-149-5p 0 0 1
chr1:175158505|175158681 hsa-miR-149-3p 0 0 1
chr1:175158505|175158681 hsa-miR-641 0 0 1
chr1:175158505|175158681 hsa-miR-938 0 0 1
chr1:175158505|175158681 hsa-miR-939-5p 0 0 1
chr1:175158505|175158681 hsa-miR-939-3p 0 0 1
chr1:175158505|175158681 hsa-miR-1178-5p 0 0 1
chr1:175158505|175158681 hsa-miR-1178-3p 0 0 1
chr1:175158505|175158681 hsa-miR-1226-5p 0 0 1
chr1:175158505|175158681 hsa-miR-1226-3p 0 0 1
chr1:175158505|175158681 hsa-miR-767-5p 0 0 1
chr1:175158505|175158681 hsa-miR-767-3p 0 0 1
chr1:175158505|175158681 hsa-miR-455-3p 0 0 1
chr1:175158505|175158681 hsa-miR-7 0 0 1
chr1:175158505|175158681 hsa-miR-1308 0 0 1
chr1:175158505|175158681 hsa-miR-4252 0 1 0
chr1:175158505|175158681 hsa-miR-4436a 0 1 0
chr1:175158505|175158681 hsa-miR-4440 1 1 0
chr1:175158505|175158681 hsa-miR-4657 0 1 0
chr1:175158505|175158681 hsa-miR-7974 0 1 0
chr1:175158505|175158681 hsa-miR-18a-3p 0 1 0
chr1:175158505|175158681 hsa-miR-6757-5p 0 1 0
chr1:175158505|175158681 hsa-miR-3130-3p 0 1 0
chr1:175158505|175158681 hsa-miR-6882-3p 0 1 0
chr1:175158505|175158681 hsa-miR-5001-3p 0 1 0
chr1:175158505|175158681 hsa-miR-4764-5p 0 1 0
chr1:175158505|175158681 hsa-miR-3667-3p 0 1 0
chr1:175158505|175158681 hsa-miR-3191-5p 0 1 0
chr1:175158505|175158681 hsa-miR-4733-3p 0 1 0
chr1:175158505|175158681 hsa-miR-4776-3p 0 1 0
chr1:175158505|175158681 hsa-miR-6889-3p 0 1 0
chr1:175158505|175158681 hsa-miR-6886-3p 0 1 0
chr1:175158505|175158681 hsa-miR-6738-3p 1 1 0
chr1:175158505|175158681 hsa-miR-7152-5p 0 1 0
chr1:175158505|175158681 hsa-miR-3173-5p 1 1 0
chr1:175158505|175158681 hsa-miR-3675-5p 0 1 0
chr1:175158505|175158681 hsa-miR-6754-3p 1 0 0
chr1:175158505|175158681 hsa-miR-1266-5p 0 1 0
chr1:175158505|175158681 hsa-miR-324-3p 1 1 0
chr1:175158505|175158681 hsa-miR-6529-3p 0 1 0
chr1:175158505|175158681 hsa-miR-6744-3p 0 1 0
chr1:175158505|175158681 hsa-miR-6764-5p 0 1 0
chr1:175158505|175158681 hsa-miR-6504-5p 0 1 0
chr1:175158505|175158681 hsa-miR-5699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:175158505|175158681
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MVSSGSCGEMSSTSLGLVQADGKSFCYVKGTARGPMTNS
Nucleotide Sequence CTGGTGAGCAGTGGCAGTTGTGGGGAGATGTCTTCCACATCCCTGGGTTTGGTGCAGGCAGATGGCAAGTCATTCTGTTATGTGAAGGGCACAGCCAGAGGCCCCATGACAAACTCT
CircID chr1:175158505|175158681
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MWGDVFHIPGFGAGRWQVILLCEGHSQRPHDKL
Nucleotide Sequence TTGTGGGGAGATGTCTTCCACATCCCTGGGTTTGGTGCAGGCAGATGGCAAGTCATTCTGTTATGTGAAGGGCACAGCCAGAGGCCCCATGACAAACTC
CircID chr1:175158505|175158681
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MHQTQGCGRHLPTTATAHQDKLPFLSPPLSPPRMDGWGE
Nucleotide Sequence CTGCACCAAACCCAGGGATGTGGAAGACATCTCCCCACAACTGCCACTGCTCACCAGGACAAGCTGCCCTTCCTGTCTCCACCTCTCAGTCCCCCTAGAATGGATGGCTGGGGAGAG
CircID chr1:175158505|175158681
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MPSACTKPRDVEDISPQLPLLTRTSCPSCLHLSVPLEWMAGE
Nucleotide Sequence TTGCCATCTGCCTGCACCAAACCCAGGGATGTGGAAGACATCTCCCCACAACTGCCACTGCTCACCAGGACAAGCTGCCCTTCCTGTCTCCACCTCTCAGTCCCCCTAGAATGGATGGCTGGGGAG
CircID chr1:175158505|175158681
ORF Type ORF5
Protein Length 50
Nucleotide Length 153
Protein Sequence MSWGLWLCPSHNRMTCHLPAPNPGMWKTSPHNCHCSPGQAALPVSTSQSP
Nucleotide Sequence TTGTCATGGGGCCTCTGGCTGTGCCCTTCACATAACAGAATGACTTGCCATCTGCCTGCACCAAACCCAGGGATGTGGAAGACATCTCCCCACAACTGCCACTGCTCACCAGGACAAGCTGCCCTTCCTGTCTCCACCTCTCAGTCCCCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab